BAP1 (BRCA1 associated protein 1) - Rat Genome Database

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Gene: BAP1 (BRCA1 associated protein 1) Pan paniscus
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Symbol: BAP1
Name: BRCA1 associated protein 1
RGD ID: 11687348
Description: ENCODES a protein that exhibits chromatin binding (ortholog); thiol-dependent deubiquitinase (ortholog); INVOLVED IN macrophage homeostasis (ortholog); monoubiquitinated histone H2A deubiquitination (ortholog); monoubiquitinated protein deubiquitination (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); adrenocortical carcinoma (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin carboxyl-terminal hydrolase BAP1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,573,785 - 53,581,943 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,573,785 - 53,581,943 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0352,344,067 - 52,352,187 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
BAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,573,785 - 53,581,943 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,573,785 - 53,581,943 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0352,344,067 - 52,352,187 (-)NCBIMhudiblu_PPA_v0panPan3
BAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl352,401,008 - 52,410,008 (-)EnsemblGRCh38hg38GRCh38
GRCh38352,401,004 - 52,410,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37352,435,024 - 52,444,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,410,064 - 52,419,049 (-)NCBINCBI36hg18NCBI36
Build 34352,410,066 - 52,419,049NCBI
Celera352,414,346 - 52,423,331 (-)NCBI
Cytogenetic Map3p21.1NCBI
HuRef352,497,655 - 52,506,755 (-)NCBIHuRef
CHM1_1352,387,546 - 52,396,647 (-)NCBICHM1_1
Bap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,973,358 - 30,981,887 (+)NCBIGRCm39mm39
GRCm39 Ensembl1430,973,407 - 30,981,901 (+)Ensembl
GRCm381431,251,352 - 31,259,930 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,251,450 - 31,259,944 (+)EnsemblGRCm38mm10GRCm38
MGSCv371432,064,675 - 32,073,115 (+)NCBIGRCm37mm9NCBIm37
MGSCv361430,080,596 - 30,088,939 (+)NCBImm8
Celera1427,510,099 - 27,518,539 (+)NCBICelera
Cytogenetic Map14BNCBI
Bap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,446,709 - 6,455,535 (+)NCBI
Rnor_6.0 Ensembl167,336,685 - 7,345,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0167,336,685 - 7,345,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0167,265,075 - 7,273,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,684,470 - 6,693,296 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1166,684,871 - 6,691,564 (+)NCBI
Celera168,733,498 - 8,742,324 (-)NCBICelera
Cytogenetic Map16p16NCBI
Bap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,390,524 - 2,400,645 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,391,970 - 2,400,645 (-)NCBIChiLan1.0ChiLan1.0
BAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,355,499 - 37,364,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,355,494 - 37,511,125 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,337,055 - 37,345,854 (+)NCBI
ROS_Cfam_1.02037,705,626 - 37,714,425 (+)NCBI
UMICH_Zoey_3.12037,069,579 - 37,078,375 (+)NCBI
UNSW_CanFamBas_1.02037,478,238 - 37,487,043 (+)NCBI
UU_Cfam_GSD_1.02037,762,923 - 37,771,723 (+)NCBI
Bap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,100,437 - 170,109,229 (-)NCBI
SpeTri2.0NW_0049364733,239,009 - 3,247,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,544,575 - 34,553,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,544,570 - 34,553,538 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,758,317 - 37,767,182 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BAP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,765,510 - 13,774,866 (-)NCBI
ChlSab1.1 Ensembl2213,764,686 - 13,774,740 (-)Ensembl
Bap1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248224,809,489 - 4,818,514 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000033433   ⟹   ENSPPAP00000010779
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl353,573,785 - 53,581,943 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000033438   ⟹   ENSPPAP00000010784
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl353,574,149 - 53,581,721 (-)Ensembl
RefSeq Acc Id: XM_003818761   ⟹   XP_003818809
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1353,573,785 - 53,581,943 (-)NCBI
Mhudiblu_PPA_v0352,344,067 - 52,352,111 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014344234   ⟹   XP_014199720
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1353,573,785 - 53,581,943 (-)NCBI
Mhudiblu_PPA_v0352,344,067 - 52,352,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014344235   ⟹   XP_014199721
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1353,573,785 - 53,581,943 (-)NCBI
Mhudiblu_PPA_v0352,344,067 - 52,352,187 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014344236   ⟹   XP_014199722
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1353,573,785 - 53,581,943 (-)NCBI
Mhudiblu_PPA_v0352,344,236 - 52,352,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034956601   ⟹   XP_034812492
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0352,344,067 - 52,350,157 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_014199722   ⟸   XM_014344236
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_014199721   ⟸   XM_014344235
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003818809   ⟸   XM_003818761
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_014199720   ⟸   XM_014344234
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034812492   ⟸   XM_034956601
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000010784   ⟸   ENSPPAT00000033438
RefSeq Acc Id: ENSPPAP00000010779   ⟸   ENSPPAT00000033433
Protein Domains
UCH_1   UCH_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028588 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000010779 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000010784 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033433 UniProtKB/TrEMBL
  ENSPPAT00000033438 UniProtKB/TrEMBL
Gene3D-CATH 3.40.532.10 UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C12_UCH UniProtKB/TrEMBL
  Peptidase_C12_UCH_sf UniProtKB/TrEMBL
  UCH_C UniProtKB/TrEMBL
KEGG Report pps:100985439 UniProtKB/TrEMBL
NCBI Gene BAP1 ENTREZGENE
PANTHER PTHR10589 UniProtKB/TrEMBL
Pfam Peptidase_C12 UniProtKB/TrEMBL
  UCH_C UniProtKB/TrEMBL
PRINTS UBCTHYDRLASE UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A2R9A4W5_PANPA UniProtKB/TrEMBL
  A0A2R9A4W9_PANPA UniProtKB/TrEMBL