GID8 (GID complex subunit 8 homolog) - Rat Genome Database

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Gene: GID8 (GID complex subunit 8 homolog) Pan paniscus
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Symbol: GID8
Name: GID complex subunit 8 homolog
RGD ID: 11791518
Description: ENCODES a protein that exhibits protein homodimerization activity (inferred); INVOLVED IN positive regulation of canonical Wnt signaling pathway (inferred); positive regulation of cell population proliferation (inferred); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cell junction (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucose-induced degradation protein 8 homolog; protein C20orf11-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,718,518 - 68,728,904 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,325,193 - 59,335,588 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,617,762 - 60,627,792 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,617,762 - 60,627,792 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GID8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,718,518 - 68,728,904 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,325,193 - 59,335,588 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,617,762 - 60,627,792 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,617,762 - 60,627,792 (+)Ensemblpanpan1.1panPan2
GID8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,938,147 - 62,948,475 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,938,147 - 62,948,475 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,569,499 - 61,579,827 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,039,886 - 61,050,272 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,039,885 - 61,050,270NCBI
Celera2058,246,068 - 58,256,455 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,286,457 - 58,296,845 (+)NCBIHuRef
CHM1_12061,470,450 - 61,480,837 (+)NCBICHM1_1
T2T-CHM13v2.02064,738,261 - 64,748,596 (+)NCBIT2T-CHM13v2.0
Gid8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,351,874 - 180,363,392 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,351,910 - 180,360,526 (+)EnsemblGRCm39 Ensembl
GRCm382180,710,122 - 180,721,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,710,117 - 180,718,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,447,251 - 180,453,222 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,641,954 - 180,647,925 (+)NCBIMGSCv36mm8
Celera2184,798,078 - 184,804,046 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.26NCBI
Gid8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,203,571 - 188,214,324 (+)NCBIGRCr8
mRatBN7.23167,826,006 - 167,836,759 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,826,060 - 167,834,814 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,206,153 - 172,216,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,165,247 - 181,175,994 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,826,936 - 177,837,687 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,217,128 - 176,223,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,217,128 - 176,223,645 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,916,193 - 179,922,710 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,807,328 - 169,813,809 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,713,363 - 169,719,845 (+)NCBI
Celera3164,750,200 - 164,756,717 (-)NCBICelera
Cytogenetic Map3q43NCBI
Gid8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,146,313 - 1,153,093 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,146,313 - 1,153,093 (-)NCBIChiLan1.0ChiLan1.0
GID8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,741,165 - 46,751,516 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,741,140 - 46,746,352 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,925,212 - 45,935,589 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,613,526 - 47,623,868 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,613,442 - 47,621,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,711,287 - 46,721,668 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,834,422 - 46,844,771 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,590,595 - 47,600,986 (+)NCBIUU_Cfam_GSD_1.0
Gid8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,968,978 - 194,975,627 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,422,617 - 10,431,837 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,422,620 - 10,429,272 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GID8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,174,231 - 62,181,107 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,174,222 - 62,181,107 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GID8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,277,963 - 1,284,925 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,274,813 - 1,284,944 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,107,241 - 49,114,237 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gid8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,701,018 - 28,707,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,700,817 - 28,707,527 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000059953   ⟹   ENSPPAP00000037057
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2060,617,762 - 60,627,792 (+)Ensembl
RefSeq Acc Id: XM_034946919   ⟹   XP_034802810
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBI
NHGRI_mPanPan12068,718,518 - 68,728,904 (+)NCBI
Mhudiblu_PPA_v02059,325,193 - 59,335,588 (+)NCBI
RefSeq Acc Id: XM_055104708   ⟹   XP_054960683
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBI
NHGRI_mPanPan12068,718,531 - 68,728,904 (+)NCBI
RefSeq Acc Id: XM_063601140   ⟹   XP_063457210
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBI
RefSeq Acc Id: XR_004668103
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBI
NHGRI_mPanPan12068,718,518 - 68,728,904 (+)NCBI
Mhudiblu_PPA_v02059,325,193 - 59,335,588 (+)NCBI
RefSeq Acc Id: XR_008622254
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,725,618 - 68,735,785 (+)NCBI
NHGRI_mPanPan12068,718,751 - 68,728,904 (+)NCBI
RefSeq Acc Id: XR_008622255
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,725,223 - 68,735,785 (+)NCBI
NHGRI_mPanPan12068,718,518 - 68,728,904 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034802810 (Get FASTA)   NCBI Sequence Viewer  
  XP_054960683 (Get FASTA)   NCBI Sequence Viewer  
  XP_063457210 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037057.1
RefSeq Acc Id: XP_034802810   ⟸   XM_034946919
- UniProtKB: A0A2R9CFN3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000037057   ⟸   ENSPPAT00000059953
RefSeq Acc Id: XP_054960683   ⟸   XM_055104708
- UniProtKB: A0A2R9CFN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063457210   ⟸   XM_063601140
- UniProtKB: A0A2R9CFN3 (UniProtKB/TrEMBL)
Protein Domains
CTLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041274 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059953.1 UniProtKB/TrEMBL
InterPro CRA_dom UniProtKB/TrEMBL
  CTLH/CRA UniProtKB/TrEMBL
  CTLH_C UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  Ubq-SigPath_Reg UniProtKB/TrEMBL
NCBI Gene GID8 ENTREZGENE
PANTHER GLUCOSE-INDUCED DEGRADATION PROTEIN 8 HOMOLOG UniProtKB/TrEMBL
  RAN BINDING PROTEIN 9-RELATED UniProtKB/TrEMBL
Pfam CLTH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
PROSITE CTLH UniProtKB/TrEMBL
  LISH UniProtKB/TrEMBL
SMART CRA UniProtKB/TrEMBL
  CTLH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
UniProt A0A2R9CFN3 ENTREZGENE, UniProtKB/TrEMBL