GIPC1 (GIPC PDZ domain containing family member 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: GIPC1 (GIPC PDZ domain containing family member 1) Pan paniscus
Analyze
Symbol: GIPC1
Name: GIPC PDZ domain containing family member 1
RGD ID: 11709954
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); chemical synaptic transmission (ortholog); endothelial cell migration (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH oculopharyngodistal myopathy 2 (ortholog); FOUND IN brush border (ortholog); endocytic vesicle (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PDZ domain-containing protein GIPC1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,407,561 - 19,425,899 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,409,821 - 18,428,123 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,041,192 - 14,059,402 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,884,529 - 14,897,247 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,885,185 - 14,889,701 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
GIPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,407,561 - 19,425,899 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,409,821 - 18,428,123 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,041,192 - 14,059,402 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,884,529 - 14,897,247 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,885,185 - 14,889,701 (-)Ensemblpanpan1.1panPan2
GIPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,477,762 - 14,496,127 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,477,760 - 14,496,149 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,588,574 - 14,606,939 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,449,571 - 14,467,944 (-)NCBINCBI36Build 36hg18NCBI36
Build 341914,449,571 - 14,467,944NCBI
Celera1914,482,692 - 14,501,043 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,158,686 - 14,177,001 (-)NCBIHuRef
CHM1_11914,588,560 - 14,606,924 (-)NCBICHM1_1
T2T-CHM13v2.01914,604,395 - 14,622,744 (-)NCBIT2T-CHM13v2.0
Gipc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,376,037 - 84,391,418 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,379,306 - 84,391,323 (+)EnsemblGRCm39 Ensembl
GRCm38883,649,408 - 83,664,789 (+)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map8C2NCBI
cM Map840.22NCBI
Gipc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,380,125 - 41,392,078 (-)NCBIGRCr8
mRatBN7.21924,474,291 - 24,487,083 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,453,123 - 24,486,997 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,296,524 - 31,300,339 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,950,945 - 31,954,760 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,173,772 - 34,177,589 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,786,604 - 24,798,231 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,786,628 - 24,798,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,765,772 - 35,778,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,165,658 - 26,177,206 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,170,483 - 26,174,300 (-)NCBI
Celera1924,018,366 - 24,029,872 (-)NCBICelera
Cytogenetic Map19q11NCBI
Gipc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541533,067,689 - 33,074,730 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541533,067,689 - 33,077,749 (-)NCBIChiLan1.0ChiLan1.0
GIPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,144,076 - 48,155,069 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,150,498 - 48,157,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,020,555 - 48,030,681 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,660,996 - 48,673,506 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,661,602 - 48,678,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12047,874,912 - 47,885,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,301,291 - 48,311,404 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,544,132 - 48,554,244 (+)NCBIUU_Cfam_GSD_1.0
Gipc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,324,418 - 207,334,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366593,012,012 - 3,026,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366593,019,829 - 3,030,280 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GIPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl264,780,442 - 64,794,919 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1264,780,447 - 64,794,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,158,635 - 65,174,711 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GIPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,136,647 - 13,155,259 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,136,624 - 13,142,002 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660746,500,986 - 6,519,302 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000061155   ⟹   ENSPPAP00000038252
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1914,885,185 - 14,889,701 (-)Ensembl
RefSeq Acc Id: XM_034945338   ⟹   XP_034801229
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,407,561 - 19,425,899 (-)NCBI
NHGRI_mPanPan11918,409,821 - 18,428,123 (-)NCBI
Mhudiblu_PPA_v01914,041,192 - 14,056,266 (-)NCBI
RefSeq Acc Id: XM_055103917   ⟹   XP_054959892
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,407,561 - 19,422,605 (-)NCBI
NHGRI_mPanPan11918,409,821 - 18,424,858 (-)NCBI
RefSeq Acc Id: XM_063599961   ⟹   XP_063456031
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,407,561 - 19,425,831 (-)NCBI
RefSeq Acc Id: XM_063599962   ⟹   XP_063456032
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,407,561 - 19,422,640 (-)NCBI
RefSeq Acc Id: XM_063599963   ⟹   XP_063456033
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,407,561 - 19,422,640 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034801229 (Get FASTA)   NCBI Sequence Viewer  
  XP_054959892 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456031 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456032 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456033 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038252.1
RefSeq Acc Id: XP_034801229   ⟸   XM_034945338
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CJ83 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000038252   ⟸   ENSPPAT00000061155
RefSeq Acc Id: XP_054959892   ⟸   XM_055103917
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CJ83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063456031   ⟸   XM_063599961
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CJ83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063456033   ⟸   XM_063599963
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063456032   ⟸   XM_063599962
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CJ83 (UniProtKB/TrEMBL)
Protein Domains
PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061155.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro GIPC1/2/3 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene GIPC1 ENTREZGENE
PANTHER PDZ DOMAIN-CONTAINING PROTEIN GIPC1 UniProtKB/TrEMBL
  PTHR12259 UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
PIRSF UCP038083_GIPC UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A2R9CJ83 ENTREZGENE, UniProtKB/TrEMBL