RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1) Pan paniscus
Analyze
Symbol: RBCK1
Name: RANBP2-type and C3HC4-type zinc finger containing 1
RGD ID: 11725637
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); protein kinase C binding (ortholog); protein sequestering activity (ortholog); INVOLVED IN cytoplasmic sequestering of protein (ortholog); negative regulation of necroptotic process (ortholog); positive regulation of extrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); glycogen storage disease IV (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN LUBAC complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ranBP-type and C3HC4-type zinc finger-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.120386,569 - 409,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20386,569 - 409,580 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v020615,987 - 639,366 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
LUBAC complex  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RBCK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.120386,569 - 409,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20386,569 - 409,580 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v020615,987 - 639,366 (+)NCBIMhudiblu_PPA_v0panPan3
RBCK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl20407,498 - 432,139 (+)EnsemblGRCh38hg38GRCh38
GRCh3820408,299 - 432,139 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3720388,943 - 412,783 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620336,709 - 359,610 (+)NCBINCBI36hg18NCBI36
Build 3420336,755 - 359,610NCBI
Celera20483,557 - 506,462 (+)NCBI
Cytogenetic Map20p13NCBI
HuRef20340,142 - 362,963 (+)NCBIHuRef
CHM1_120388,711 - 411,612 (+)NCBICHM1_1
Rbck1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,158,254 - 152,174,583 (-)NCBIGRCm39mm39
GRCm39 Ensembl2152,158,254 - 152,174,573 (-)Ensembl
GRCm382152,316,334 - 152,332,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,316,334 - 152,332,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv372152,142,070 - 152,158,375 (-)NCBIGRCm37mm9NCBIm37
MGSCv362152,007,778 - 152,024,076 (-)NCBImm8
Celera2158,130,477 - 158,146,782 (-)NCBICelera
Cytogenetic Map2G3NCBI
Rbck1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23140,789,079 - 140,806,017 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3140,789,080 - 140,806,005 (-)Ensembl
Rnor_6.03147,793,014 - 147,809,941 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,793,017 - 147,809,919 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,141,154 - 154,158,071 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,644,156 - 142,660,799 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13142,549,729 - 142,566,372 (-)NCBI
Celera3139,541,427 - 139,557,526 (-)NCBICelera
Cytogenetic Map3q41NCBI
Rbck1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597271,897 - 289,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955597272,352 - 289,348 (+)NCBIChiLan1.0ChiLan1.0
RBCK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,423,378 - 20,440,985 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,423,988 - 20,441,114 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,077,323 - 20,094,821 (-)NCBI
ROS_Cfam_1.02421,116,652 - 21,134,123 (-)NCBI
ROS_Cfam_1.0 Ensembl2421,116,180 - 21,134,273 (-)Ensembl
UMICH_Zoey_3.12420,391,937 - 20,409,382 (-)NCBI
UNSW_CanFamBas_1.02420,497,899 - 20,515,382 (-)NCBI
UU_Cfam_GSD_1.02420,928,435 - 20,945,897 (-)NCBI
Rbck1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,626,204 - 169,641,220 (-)NCBI
SpeTri2.0NW_00493648518,057,569 - 18,071,787 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBCK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,784,016 - 34,801,231 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,784,018 - 34,801,228 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,566,871 - 39,579,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103247827
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,537,387 - 35,559,628 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl235,538,127 - 35,560,129 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660787,711,829 - 7,726,135 (+)NCBIVero_WHO_p1.0
Rbck1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247411,503,017 - 1,523,542 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000042746   ⟹   ENSPPAP00000019966
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20386,569 - 409,580 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042754   ⟹   ENSPPAP00000019972
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20387,179 - 409,046 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042758   ⟹   ENSPPAP00000019976
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20387,179 - 388,994 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042761   ⟹   ENSPPAP00000019979
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20387,198 - 388,994 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042765   ⟹   ENSPPAP00000019982
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20395,708 - 409,046 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042777   ⟹   ENSPPAP00000019994
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20396,333 - 409,046 (+)Ensembl
RefSeq Acc Id: XM_003821245   ⟹   XP_003821293
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.120386,569 - 409,587 (+)NCBI
Mhudiblu_PPA_v020616,218 - 639,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024926895   ⟹   XP_024782663
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.120386,569 - 409,587 (+)NCBI
Mhudiblu_PPA_v020615,987 - 639,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024926896   ⟹   XP_024782664
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.120386,776 - 389,154 (+)NCBI
Mhudiblu_PPA_v020615,987 - 618,688 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034947813   ⟹   XP_034803704
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v020616,212 - 639,366 (+)NCBI
RefSeq Acc Id: XR_004668368
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v020616,577 - 636,983 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003821293 (Get FASTA)   NCBI Sequence Viewer  
  XP_024782663 (Get FASTA)   NCBI Sequence Viewer  
  XP_024782664 (Get FASTA)   NCBI Sequence Viewer  
  XP_034803704 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003821293   ⟸   XM_003821245
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024782663   ⟸   XM_024926895
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024782664   ⟸   XM_024926896
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034803704   ⟸   XM_034947813
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000019966   ⟸   ENSPPAT00000042746
RefSeq Acc Id: ENSPPAP00000019972   ⟸   ENSPPAT00000042754
RefSeq Acc Id: ENSPPAP00000019976   ⟸   ENSPPAT00000042758
RefSeq Acc Id: ENSPPAP00000019982   ⟸   ENSPPAT00000042765
RefSeq Acc Id: ENSPPAP00000019979   ⟸   ENSPPAT00000042761
RefSeq Acc Id: ENSPPAP00000019994   ⟸   ENSPPAT00000042777
Protein Domains
RanBP2-type   RING-type   Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033155 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000019966 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000019972 UniProtKB/TrEMBL
  ENSPPAP00000019976 UniProtKB/TrEMBL
  ENSPPAP00000019979 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000019982 UniProtKB/TrEMBL
  ENSPPAP00000019994 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042746 UniProtKB/TrEMBL
  ENSPPAT00000042754 UniProtKB/TrEMBL
  ENSPPAT00000042758 UniProtKB/TrEMBL
  ENSPPAT00000042761 UniProtKB/TrEMBL
  ENSPPAT00000042765 UniProtKB/TrEMBL
  ENSPPAT00000042777 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro IBR_dom UniProtKB/TrEMBL
  RBCK1/SHARPIN UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report pps:100981890 UniProtKB/TrEMBL
NCBI Gene RBCK1 ENTREZGENE
PANTHER PTHR22770:SF35 UniProtKB/TrEMBL
Pfam IBR UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  SSF90209 UniProtKB/TrEMBL
UniProt A0A2R9ARI6_PANPA UniProtKB/TrEMBL
  A0A2R9ARJ5_PANPA UniProtKB/TrEMBL
  A0A2R9ARJ9_PANPA UniProtKB/TrEMBL
  A0A2R9ARK5_PANPA UniProtKB/TrEMBL
  A0A2R9AY59_PANPA UniProtKB/TrEMBL
  A0A2R9AY73_PANPA UniProtKB/TrEMBL