TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein) - Rat Genome Database

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Gene: TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein) Pan paniscus
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Symbol: TRPC4AP
Name: transient receptor potential cation channel subfamily C member 4 associated protein
RGD ID: 11767336
Description: ENCODES a protein that exhibits phosphatase binding (inferred); ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN hair follicle maturation (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); long QT syndrome (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,735,344 - 40,826,296 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,728,447 - 40,819,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,330,860 - 31,420,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,455,536 - 32,545,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,455,536 - 32,545,780 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRPC4AP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,735,344 - 40,826,296 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,728,447 - 40,819,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,330,860 - 31,420,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,455,536 - 32,545,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,455,536 - 32,545,780 (-)Ensemblpanpan1.1panPan2
TRPC4AP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,002,404 - 35,092,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,002,404 - 35,092,807 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,590,207 - 33,680,610 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,053,868 - 33,144,279 (-)NCBINCBI36Build 36hg18NCBI36
Celera2030,339,293 - 30,429,447 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,368,536 - 30,458,590 (-)NCBIHuRef
CHM1_12033,491,389 - 33,581,552 (-)NCBICHM1_1
T2T-CHM13v2.02036,717,007 - 36,813,143 (-)NCBIT2T-CHM13v2.0
Trpc4ap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,476,197 - 155,534,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,476,191 - 155,534,304 (-)EnsemblGRCm39 Ensembl
GRCm382155,634,277 - 155,692,384 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,634,271 - 155,692,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,460,013 - 155,518,120 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,325,749 - 155,383,773 (-)NCBIMGSCv36mm8
Celera2161,566,542 - 161,624,663 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Trpc4ap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,582,146 - 164,653,123 (-)NCBIGRCr8
mRatBN7.23144,122,003 - 144,192,986 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,122,003 - 144,192,986 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,988,304 - 148,059,284 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,605,584 - 156,676,566 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,345,122 - 154,416,061 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,150,396 - 151,224,123 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,150,396 - 151,224,123 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,518,203 - 157,588,962 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,139,493 - 146,206,625 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13146,045,105 - 146,112,244 (-)NCBI
Celera3142,846,195 - 142,917,255 (-)NCBICelera
Cytogenetic Map3q42NCBI
Trpc4ap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,301,464 - 26,386,007 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,301,937 - 26,383,464 (+)NCBIChiLan1.0ChiLan1.0
TRPC4AP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,041,023 - 24,109,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,041,550 - 24,109,904 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,687,058 - 23,756,260 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,732,981 - 24,802,322 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,732,983 - 24,802,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,020,060 - 24,089,441 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,115,489 - 24,184,767 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,554,407 - 24,623,463 (-)NCBIUU_Cfam_GSD_1.0
Trpc4ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,028,172 - 173,107,284 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,642,249 - 5,721,377 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,642,265 - 5,721,377 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC4AP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,385,653 - 38,468,295 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,385,650 - 38,468,290 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,582,681 - 43,665,530 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC4AP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1239,304,240 - 39,391,447 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl239,305,203 - 39,391,418 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,420,710 - 87,508,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpc4ap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,316,578 - 4,395,792 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248424,317,710 - 4,395,792 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000026952   ⟹   ENSPPAP00000006142
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,455,536 - 32,545,780 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000026955   ⟹   ENSPPAP00000006144
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,456,278 - 32,545,699 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000026960   ⟹   ENSPPAP00000006146
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,456,278 - 32,508,879 (-)Ensembl
RefSeq Acc Id: XM_003831830   ⟹   XP_003831878
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,826,296 (-)NCBI
NHGRI_mPanPan12040,728,447 - 40,819,400 (-)NCBI
Mhudiblu_PPA_v02031,330,863 - 31,420,662 (-)NCBI
PanPan1.12032,455,536 - 32,545,780 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003831831   ⟹   XP_003831879
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,826,296 (-)NCBI
NHGRI_mPanPan12040,728,447 - 40,819,400 (-)NCBI
Mhudiblu_PPA_v02031,330,860 - 31,420,662 (-)NCBI
PanPan1.12032,455,536 - 32,545,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003831832   ⟹   XP_003831880
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,825,177 (-)NCBI
NHGRI_mPanPan12040,728,447 - 40,818,260 (-)NCBI
Mhudiblu_PPA_v02031,330,863 - 31,420,662 (-)NCBI
PanPan1.12032,455,556 - 32,545,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055104981   ⟹   XP_054960956
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,825,177 (-)NCBI
NHGRI_mPanPan12040,728,447 - 40,818,261 (-)NCBI
RefSeq Acc Id: XM_063600801   ⟹   XP_063456871
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,826,296 (-)NCBI
RefSeq Acc Id: XM_063600802   ⟹   XP_063456872
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,826,296 (-)NCBI
RefSeq Acc Id: XM_063600803   ⟹   XP_063456873
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,825,177 (-)NCBI
RefSeq Acc Id: XM_063600804   ⟹   XP_063456874
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,735,344 - 40,825,177 (-)NCBI
RefSeq Acc Id: XP_003831878   ⟸   XM_003831830
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZTF1 (UniProtKB/TrEMBL),   A0A2R8ZMH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003831879   ⟸   XM_003831831
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZMH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003831880   ⟸   XM_003831832
- Peptide Label: isoform X7
- UniProtKB: A0A2R8ZMH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000006146   ⟸   ENSPPAT00000026960
Ensembl Acc Id: ENSPPAP00000006144   ⟸   ENSPPAT00000026955
Ensembl Acc Id: ENSPPAP00000006142   ⟸   ENSPPAT00000026952
RefSeq Acc Id: XP_054960956   ⟸   XM_055104981
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063456872   ⟸   XM_063600802
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063456871   ⟸   XM_063600801
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063456874   ⟸   XM_063600804
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063456873   ⟸   XM_063600803
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000024329 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000026952.1 UniProtKB/TrEMBL
  ENSPPAT00000026955.1 UniProtKB/TrEMBL
  ENSPPAT00000026960.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  TRPC4AP UniProtKB/TrEMBL
KEGG Report pps:100978677 UniProtKB/TrEMBL
NCBI Gene TRPC4AP ENTREZGENE
PANTHER PTHR31743 UniProtKB/TrEMBL
  SHORT TRANSIENT RECEPTOR POTENTIAL CHANNEL 4-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam DUF3689 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R8ZMH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZQ65_PANPA UniProtKB/TrEMBL
  A0A2R8ZTF1 ENTREZGENE, UniProtKB/TrEMBL