CSNK2A1 (casein kinase 2 alpha 1) - Rat Genome Database

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Gene: CSNK2A1 (casein kinase 2 alpha 1) Pan paniscus
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Symbol: CSNK2A1
Name: casein kinase 2 alpha 1
RGD ID: 12021200
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN cerebral cortex development (ortholog); DNA damage response (ortholog); double-strand break repair (ortholog); PARTICIPATES IN E-cadherin signaling pathway; mitochondrial autophagy pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); autism spectrum disorder (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); PcG protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: casein kinase II subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,569,710 - 1,632,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,568,135 - 1,629,104 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020689,494 - 752,092 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120459,070 - 521,126 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20456,629 - 521,126 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CSNK2A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,569,710 - 1,632,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,568,135 - 1,629,104 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020689,494 - 752,092 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120459,070 - 521,126 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20456,629 - 521,126 (-)Ensemblpanpan1.1panPan2
CSNK2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820472,498 - 543,790 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20472,498 - 543,835 (-)EnsemblGRCh38hg38GRCh38
GRCh3720453,142 - 524,434 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3620411,338 - 472,482 (-)NCBINCBI36Build 36hg18NCBI36
Build 3420411,337 - 472,482NCBI
Celera20558,168 - 619,315 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20414,534 - 475,783 (-)NCBIHuRef
CHM1_120463,361 - 524,481 (-)NCBICHM1_1
T2T-CHM13v2.020516,232 - 587,494 (-)NCBIT2T-CHM13v2.0
Csnk2a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,068,468 - 152,123,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,068,759 - 152,123,772 (+)EnsemblGRCm39 Ensembl
GRCm382152,226,535 - 152,281,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,226,839 - 152,281,852 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,052,576 - 152,107,588 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,918,392 - 151,973,288 (+)NCBIMGSCv36mm8
Celera2158,043,147 - 158,095,936 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Csnk2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,170,295 - 161,217,073 (+)NCBIGRCr8
mRatBN7.23140,709,984 - 140,756,757 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,709,991 - 140,756,696 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,614,755 - 144,658,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,198,587 - 153,242,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,938,676 - 150,982,746 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,713,808 - 147,760,375 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,713,821 - 147,757,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,061,948 - 154,108,516 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,564,754 - 142,609,311 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,470,349 - 142,514,931 (+)NCBI
Celera3139,476,391 - 139,506,459 (+)NCBICelera
Cytogenetic Map3q41NCBI
Csnk2a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955597326,601 - 397,112 (-)NCBIChiLan1.0ChiLan1.0
CSNK2A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,333,593 - 20,390,341 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2419,985,091 - 20,044,278 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,024,162 - 21,083,612 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,024,195 - 21,083,217 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,299,232 - 20,358,675 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,405,477 - 20,464,884 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,835,744 - 20,895,178 (+)NCBIUU_Cfam_GSD_1.0
Csnk2a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,535,585 - 169,588,246 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648517,966,993 - 18,021,191 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK2A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11734,692,960 - 34,748,067 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,413,860 - 39,467,386 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK2A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,982,259 - 56,047,023 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660787,905,841 - 7,970,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk2a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247411,566,380 - 1,635,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000041410   ⟹   ENSPPAP00000018674
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20456,629 - 486,247 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000041439   ⟹   ENSPPAP00000018702
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20459,070 - 521,126 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000041448   ⟹   ENSPPAP00000018710
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20461,923 - 486,247 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000041451   ⟹   ENSPPAP00000018712
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20463,020 - 486,247 (-)Ensembl
RefSeq Acc Id: XM_008974710   ⟹   XP_008972958
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2211,569,710 - 1,632,281 (-)NCBI
NHGRI_mPanPan1201,568,135 - 1,629,104 (-)NCBI
Mhudiblu_PPA_v020689,494 - 752,092 (-)NCBI
PanPan1.120459,070 - 521,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008974711   ⟹   XP_008972959
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2211,569,710 - 1,632,259 (-)NCBI
NHGRI_mPanPan1201,568,135 - 1,629,087 (-)NCBI
Mhudiblu_PPA_v020689,494 - 752,070 (-)NCBI
PanPan1.120460,656 - 521,126 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008972958 (Get FASTA)   NCBI Sequence Viewer  
  XP_008972959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018674.1
  ENSPPAP00000018702
  ENSPPAP00000018702.1
  ENSPPAP00000018710.1
  ENSPPAP00000018712.1
RefSeq Acc Id: XP_008972958   ⟸   XM_008974710
- UniProtKB: A0A2R9AMW1 (UniProtKB/TrEMBL),   A0A2R9ASF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008972959   ⟸   XM_008974711
- UniProtKB: A0A2R9AMW1 (UniProtKB/TrEMBL),   A0A2R9ASF6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000018674   ⟸   ENSPPAT00000041410
Ensembl Acc Id: ENSPPAP00000018702   ⟸   ENSPPAT00000041439
Ensembl Acc Id: ENSPPAP00000018710   ⟸   ENSPPAT00000041448
Ensembl Acc Id: ENSPPAP00000018712   ⟸   ENSPPAT00000041451
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032454 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041410.1 UniProtKB/TrEMBL
  ENSPPAT00000041439.1 UniProtKB/TrEMBL
  ENSPPAT00000041448.1 UniProtKB/TrEMBL
  ENSPPAT00000041451.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro CK2_alpha UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report pps:100982778 UniProtKB/TrEMBL
NCBI Gene CSNK2A1 ENTREZGENE
PANTHER CASEIN KINASE II SUBUNIT ALPHA-RELATED UniProtKB/TrEMBL
  PTHR24054 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A2R9AMW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AMX1_PANPA UniProtKB/TrEMBL
  A0A2R9ASF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AUS7_PANPA UniProtKB/TrEMBL