SUMO1 (small ubiquitin like modifier 1) - Rat Genome Database

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Gene: SUMO1 (small ubiquitin like modifier 1) Pan paniscus
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Symbol: SUMO1
Name: small ubiquitin like modifier 1
RGD ID: 11761043
Description: ENCODES a protein that exhibits enzyme binding (ortholog); potassium channel regulator activity (ortholog); small protein activating enzyme binding (ortholog); INVOLVED IN cellular response to cadmium ion (ortholog); cellular response to heat (ortholog); negative regulation of action potential (ortholog); PARTICIPATES IN sumoylation pathway; ASSOCIATED WITH cleft lip (ortholog); cleft palate (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN dendrite (ortholog); fibrillar center (ortholog); heterochromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: small ubiquitin-like modifier 1; small ubiquitin-related modifier 1; SMT3 suppressor of mif two 3 homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B207,613,649 - 207,645,590 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B207,613,654 - 207,645,590 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B89,461,773 - 89,493,879 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SUMO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B207,613,649 - 207,645,590 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B207,613,654 - 207,645,590 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B89,461,773 - 89,493,879 (-)NCBIMhudiblu_PPA_v0panPan3
SUMO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2202,206,182 - 202,238,599 (-)EnsemblGRCh38hg38GRCh38
GRCh382202,206,171 - 202,238,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372203,070,894 - 203,103,320 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362202,779,148 - 202,811,567 (-)NCBINCBI36hg18NCBI36
Build 342202,896,408 - 202,928,828NCBI
Celera2196,822,670 - 196,855,115 (-)NCBI
Cytogenetic Map2q33.1NCBI
HuRef2194,919,783 - 194,951,410 (-)NCBIHuRef
CHM1_12203,077,457 - 203,109,867 (-)NCBICHM1_1
Sumo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,678,593 - 59,709,993 (-)NCBIGRCm39mm39
GRCm39 Ensembl159,625,717 - 59,709,993 (-)Ensembl
GRCm38159,639,434 - 59,670,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,586,558 - 59,670,834 (-)EnsemblGRCm38mm10GRCm38
MGSCv37159,696,278 - 59,727,678 (-)NCBIGRCm37mm9NCBIm37
MGSCv36159,583,983 - 59,615,355 (-)NCBImm8
Celera160,154,082 - 60,185,562 (-)NCBICelera
Cytogenetic Map1C2NCBI
Sumo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2961,078,790 - 61,108,697 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl961,077,435 - 61,108,761 (-)Ensembl
Rnor_6.0966,453,428 - 66,483,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,258,853 - 66,288,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,212,538 - 58,242,760 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1958,359,520 - 58,389,742 (-)NCBI
Celera958,513,570 - 58,543,459 (-)NCBICelera
Cytogenetic Map9q31NCBI
Sumo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545712,538,480 - 12,565,803 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545712,538,974 - 12,565,803 (+)NCBIChiLan1.0ChiLan1.0
SUMO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,199,937 - 11,229,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,200,590 - 11,229,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,083,987 - 12,113,143 (-)NCBI
ROS_Cfam_1.03711,136,626 - 11,165,785 (-)NCBI
UMICH_Zoey_3.13711,087,432 - 11,116,739 (-)NCBI
UNSW_CanFamBas_1.03711,065,890 - 11,095,045 (-)NCBI
UU_Cfam_GSD_1.03711,059,162 - 11,088,313 (-)NCBI
Sumo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,432,685 - 159,443,682 (-)NCBI
SpeTri2.0NW_0049367261,402,977 - 1,413,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15105,815,281 - 105,850,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115105,820,237 - 105,850,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,249,291 - 117,249,369 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11087,917,324 - 87,957,152 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040111,440,837 - 111,472,603 (+)NCBIVero_WHO_p1.0
Sumo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476514,205,071 - 14,229,864 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056198   ⟹   ENSPPAP00000033322
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B207,613,654 - 207,645,590 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056208   ⟹   ENSPPAP00000033333
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B207,614,720 - 207,645,445 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056212   ⟹   ENSPPAP00000033337
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B207,614,720 - 207,645,445 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056215   ⟹   ENSPPAP00000033340
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B207,614,720 - 207,645,445 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056221   ⟹   ENSPPAP00000033346
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B207,614,720 - 207,631,763 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056223   ⟹   ENSPPAP00000033348
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B207,614,720 - 207,631,763 (-)Ensembl
RefSeq Acc Id: XM_003820763   ⟹   XP_003820811
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B207,613,649 - 207,645,590 (-)NCBI
Mhudiblu_PPA_v02B89,461,773 - 89,493,879 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034954815   ⟹   XP_034810706
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B89,461,773 - 89,493,879 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003820811 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810706 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003820811   ⟸   XM_003820763
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034810706   ⟸   XM_034954815
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000033322   ⟸   ENSPPAT00000056198
RefSeq Acc Id: ENSPPAP00000033346   ⟸   ENSPPAT00000056221
RefSeq Acc Id: ENSPPAP00000033348   ⟸   ENSPPAT00000056223
RefSeq Acc Id: ENSPPAP00000033333   ⟸   ENSPPAT00000056208
RefSeq Acc Id: ENSPPAP00000033340   ⟸   ENSPPAT00000056215
RefSeq Acc Id: ENSPPAP00000033337   ⟸   ENSPPAT00000056212


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039520 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000033322 ENTREZGENE
NCBI Gene SUMO1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 SUMO1  small ubiquitin like modifier 1    small ubiquitin-like modifier 1  Symbol and/or name change 5135510 APPROVED