N4BP1 (NEDD4 binding protein 1) - Rat Genome Database

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Gene: N4BP1 (NEDD4 binding protein 1) Pan paniscus
Analyze
Symbol: N4BP1
Name: NEDD4 binding protein 1
RGD ID: 11958909
Description: ENCODES a protein that exhibits mRNA binding (inferred); nuclease activity (inferred); RNA binding (inferred); INVOLVED IN cellular response to UV (inferred); innate immune response (inferred); negative regulation of cytokine production (inferred); FOUND IN cytosol (inferred); nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NEDD4-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21858,003,971 - 58,075,463 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11663,909,349 - 63,980,840 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01628,809,881 - 28,881,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11647,698,353 - 47,769,755 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1647,698,353 - 47,769,755 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
nucleolus  (IEA)
nucleus  (IEA)
PML body  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
N4BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21858,003,971 - 58,075,463 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11663,909,349 - 63,980,840 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01628,809,881 - 28,881,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11647,698,353 - 47,769,755 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1647,698,353 - 47,769,755 (-)Ensemblpanpan1.1panPan2
N4BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381648,538,726 - 48,610,180 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1648,538,726 - 48,620,148 (-)EnsemblGRCh38hg38GRCh38
GRCh371648,572,637 - 48,644,091 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361647,130,138 - 47,201,621 (-)NCBINCBI36Build 36hg18NCBI36
Celera1633,082,817 - 33,154,845 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1634,461,906 - 34,534,177 (-)NCBIHuRef
CHM1_11649,979,544 - 50,051,027 (-)NCBICHM1_1
T2T-CHM13v2.01654,336,403 - 54,407,853 (-)NCBIT2T-CHM13v2.0
N4bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39887,567,764 - 87,612,489 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl887,534,788 - 87,611,886 (-)EnsemblGRCm39 Ensembl
GRCm38886,841,136 - 86,885,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl886,808,160 - 86,885,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv37889,365,038 - 89,409,157 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36889,731,243 - 89,793,420 (-)NCBIMGSCv36mm8
Celera891,109,318 - 91,153,508 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map842.1NCBI
N4bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81936,396,082 - 36,446,835 (+)NCBIGRCr8
mRatBN7.21920,222,811 - 20,273,570 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1920,222,776 - 20,273,570 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1921,902,852 - 21,954,586 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01927,097,354 - 27,149,081 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01930,056,376 - 30,108,116 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01921,218,123 - 21,268,539 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1921,218,465 - 21,266,964 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01932,227,654 - 32,278,065 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41921,560,480 - 21,607,541 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11921,565,106 - 21,612,408 (+)NCBI
Celera1920,095,810 - 20,146,806 (+)NCBICelera
Cytogenetic Map19p11NCBI
N4bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554746,796,066 - 6,814,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554746,796,068 - 6,814,906 (+)NCBIChiLan1.0ChiLan1.0
N4BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,544,665 - 66,565,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,544,677 - 66,561,560 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha263,093,025 - 63,142,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,075,168 - 67,124,376 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,074,880 - 67,122,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1263,888,846 - 63,938,016 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0264,912,136 - 64,961,292 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,799,997 - 65,849,380 (+)NCBIUU_Cfam_GSD_1.0
N4bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934957,823,618 - 57,843,214 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364751,741,528 - 1,765,491 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364751,743,205 - 1,765,466 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
N4BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl636,122,035 - 36,174,504 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1636,122,189 - 36,177,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2631,414,695 - 31,466,654 (+)NCBISscrofa10.2Sscrofa10.2susScr3
N4BP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1534,351,845 - 34,423,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl534,347,979 - 34,422,887 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604742,112,683 - 42,187,699 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
N4bp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249142,319,474 - 2,369,078 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249142,319,809 - 2,369,128 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003819804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000046172   ⟹   ENSPPAP00000023348
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1647,698,353 - 47,769,755 (-)Ensembl
RefSeq Acc Id: XM_003819804   ⟹   XP_003819852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21858,003,971 - 58,075,463 (-)NCBI
NHGRI_mPanPan11663,909,349 - 63,980,840 (-)NCBI
Mhudiblu_PPA_v01628,809,881 - 28,881,352 (-)NCBI
PanPan1.11647,698,353 - 47,769,755 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003819852 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023348
  ENSPPAP00000023348.1
RefSeq Acc Id: XP_003819852   ⟸   XM_003819804
- UniProtKB: A0A2R9B586 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000023348   ⟸   ENSPPAT00000046172
Protein Domains
RNase NYN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034858 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046172.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11980 UniProtKB/TrEMBL
InterPro RNase_Zc3h12_NYN UniProtKB/TrEMBL
  ZC3H12/N4BP1_RNase_Reg UniProtKB/TrEMBL
KEGG Report pps:100980307 UniProtKB/TrEMBL
NCBI Gene N4BP1 ENTREZGENE
PANTHER N4BP1-RELATED UniProtKB/TrEMBL
  NEDD4-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam RNase_Zc3h12a UniProtKB/TrEMBL
UniProt A0A2R9B586 ENTREZGENE, UniProtKB/TrEMBL