RNF170 (ring finger protein 170) - Rat Genome Database

Name: RNF170
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: RNF170 (ring finger protein 170) Pan paniscus

Analyze

Symbol:

RNF170

Name:

ring finger protein 170

RGD ID:

11797199

Description:

ASSOCIATED WITH autosomal dominant sensory ataxia 1 (ortholog); congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); Idiopathic Basal Ganglia Calcification 1 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

E3 ubiquitin-protein ligase RNF170

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF170 (ring finger protein 170)	NCBI	Ortholog
Mus musculus (house mouse):	Rnf170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rnf170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RNF170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf170 (ring finger protein 170)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	39,541,479 - 39,588,163 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	39,541,479 - 39,588,163 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	42,097,900 - 42,145,327 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant sensory ataxia 1 (ISO)

congenital muscular dystrophy-dystroglycanopathy type A12 (ISO)

Idiopathic Basal Ganglia Calcification 1 (ISO)

IMMUNODEFICIENCY 15 (ISO)

Sensory Ataxia, Autosomal Dominant (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

RNF170
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	39,541,479 - 39,588,163 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	39,541,479 - 39,588,163 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	42,097,900 - 42,145,327 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RNF170
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	8	42,849,637 - 42,897,290 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	8	42,849,637 - 42,897,294 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	8	42,704,780 - 42,751,748 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	42,829,548 - 42,870,939 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	8	42,829,547 - 42,870,939	NCBI
Celera	8	41,652,777 - 41,700,691 (-)	NCBI
Cytogenetic Map	8	p11.21	NCBI
HuRef	8	41,227,278 - 41,275,153 (-)	NCBI		HuRef
CHM1_1	8	42,751,675 - 42,798,772 (-)	NCBI		CHM1_1

Rnf170
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	26,609,396 - 26,633,903 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	26,609,396 - 26,641,818 (+)	Ensembl
GRCm38	8	26,119,368 - 26,143,875 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	26,119,368 - 26,151,790 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	27,229,852 - 27,254,343 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	27,585,066 - 27,607,163 (+)	NCBI			mm8
Celera	8	27,589,477 - 27,613,755 (+)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI

Rnf170
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	65,928,886 - 65,954,092 (-)	NCBI
Rnor_6.0 Ensembl	16	70,687,487 - 70,705,128 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	70,684,886 - 70,710,147 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	70,350,525 - 70,376,322 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	16	63,840,220 - 63,865,468 (-)	NCBI		Celera
Cytogenetic Map	16	q12.4	NCBI

Rnf170
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	13,096,483 - 13,147,637 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	13,093,914 - 13,148,800 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNF170
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	16	22,900,313 - 22,927,125 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	16	22,901,224 - 22,929,990 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rnf170
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004937108	111,111 - 147,077 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF170
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	11,780,129 - 11,817,483 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	11,777,942 - 11,817,920 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	12,589,027 - 12,602,225 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF170
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	40,852,995 - 40,896,800 (-)	NCBI
ChlSab1.1 Ensembl	8	40,850,552 - 40,896,887 (-)	Ensembl

Rnf170
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624780	67,160 - 127,620 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008976900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008976901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014345932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034966024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034966025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034966026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034966027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000026259 ⟹ ENSPPAP00000005889

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	39,541,479 - 39,588,157 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000026264 ⟹ ENSPPAP00000005890

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	39,545,140 - 39,588,163 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000026275 ⟹ ENSPPAP00000005892

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	39,553,651 - 39,579,426 (-)	Ensembl

RefSeq Acc Id:

XM_008976900 ⟹ XP_008975148

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	8	39,545,140 - 39,588,157 (-)	NCBI
Mhudiblu_PPA_v0	8	42,101,572 - 42,145,212 (-)	NCBI

Sequence:

show sequence

GGGACGTCTAGTGGGTTGCCCGGGAGGGGTGGCGGGAGCGGTCCCGGAAATAATCTGTCCTCTG
TCGCCGGGAACTGGCGAGGTAGTTCCTTCGCGGTGGAGAGACCTGGAATGGCCAAATATCAAGG
TGAAGTTCAAAGTTTGAAACTGGATGATGATTCAGTTATAGAAGGAGTAAGCGACCAAGTACTT
GTGGCAGTTGTGGTCAGTTTCGCTTTGATTGCTACCCTGGTATATGCACTTTTCAGAAATGTAC
ATCAAAACATTCACCCAGAAAACCAGGAGCTAGTAAGGGTACTTCGAGAACAGCTTCAAACAGA
ACAGGATGCACCTGCTGCCGCTCGACAGCAGTTCTACACTGACATGTACTGTCCCATCTGCCTG
CACCAAGCCTCCTTCCCGGTGGAGACCAACTGTGGACATCTTTTTTGTGGTGCCTGCATTGTTG
CTTACTGGCGATATGGTTCATGGCTTGGGGCAATCAGTTGTCCAATCTGTAGACAAACGGTAAC
CTTACTCCTAACAGTATTTGGTGAAGATGATCAGTCTCAGGATGTTGTGAGATTGCATCAGGAT
ATTAATGATTATAACCGGAGATTCTCAGGGCAACCCAGATCTATTATGGAGAGAATTATGGATC
TACCCACTTTACTGAGGCATGCATTCAGGGAAATGTTTTCAGTCGGGGGCCTTTTCTGGATGTT
TCGCATCAGGATAATACTTTGTTTAATGGGAGCTTTTTTCTATCTTATATCACCTCTAGATTTT
GTACCTGAAGCCTTGTTTGGAATTCTAGGCTTTCTAGATGATTTCTTTGTCATCTTTTTATTGC
TTATCTACATCTCTATTATGTATCGAGAAGTGATAACCCAAAGGCTAACTAGATGAAAAAGAAA
ACAAAACTGAGTTTACTAGGATATCTGAGCTAATGTAGAACATCAAACAGAAGGACCCATGGCA
GTATAAAGCAATGAAGCAATGGAGTATTATCTCACAAATATAAAACCACTATAAGACAAACATT
TGATTATCACTTGACAAATACCTAGGTATAACTGGAATTTTCATGTTTGAAGTTCTAATATTAA
GTTTAGAATTATAATGATCTACAGTTGTATCTTGATTCTATGTTGTCTGGAAAAAATATGGAAT
TATATAAAAAGGGATGCTTTTATATATTTTTCTTTTCCCCAGAATTACTTAGATTAATTAGATG
TATAGTAAAATATTGTTAAATGTCAGTTTATCCATCTTATCCTTCTCAGCAGGTACCTATATGA
TAATATATAGCTGTGAAACTCATCTAAATATTTTTGTTACAATAAAATATTATATACTATTGGG
GAAAATTCAGTATTTCTTTTAGTGCTAGCTAAGTTTTGTGCATTTGGAGCAGTTCTGCTTTTTC
ATTCTGGTATAATTAATTATTTGCTATCAGCTGAAACTGAAAGAAGAAACTTGAACTTCATACT
TCGATACCATATTCTAGTTTACAGAACATATTTTAATCAATAGAAGAATTAAGATGAAAAACAT
GGCCGGGCGGGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGTAGATCAC
AAGGTCAGGAGATCAGGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAA
AAAATTAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAG
AATGGCGTAAACCCAGGAGGTGGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACT
CCCTCTCAAAAAAAAAAAAAGATGAAAAACATTTATCTCCAGTCAGCACACTTGATGTTCACAG
ACATTTAAACAAGAGCTCATCCTTTCATAGTAGATATAAAAGTAATTTGTAAAGGGAAGATTGT
TTTAGGAACCTGGGCAATGCTGCAAACACAGAGTAGCCTGATGCATTTCTGAGGAAGGTGAATC
TTCGTGTCTTTGAGCATCAAGCCAATAGGAAGGTACTGGGAACGGTATTTACATTTGACAAAAG
AAATTACTGGTTAGCTATAGCAACAGATTGGACAAATTTGGTTAGTTTTCTGTTGTCAGAAATT
TTTATAATACTGTCTCAGGATGGCAGCACACAGCTCAGATTCATGTCTTGAGCCAAACAAGTGA
ATGTATCTGAGAAGACTCAGTACCACATGGTACTGGGAGATCTTACTCACTTCAGCTGGCATTG
CTCATTAGTGAATGTATGACAGCAGGATGTGAGGGGATGCCCAGGAGTCAGTGTTAGCATTGTC
ATCTGAGATCACTGCTATTAATATCATCCATTAATTTATTAGTGAGCTTCACTATATGCAGACT
GGGAGATAAGGAGAAAATCTGTCACATTCTCTCCAGCTAATCAGATCAGCTACTAATTAATGAG
ATTCTGAATGAAATATCAATATGTGTTTTTCTAATTTGGACCTAGGACAGAGCTGTTGCTTGTC
AGAGAAAAACAATAATGCTTAAACATAGCACATTATAATTAAAGCAGGTTTCTCACATACTTTT
CATTTTATCCTTTGGATAATTTTGTGAGGAACGCAGGACACCAACTTCCCTTTCATAGATACAA
TCCCCATGCTATTGATGAAAGTGTTTTTGAATGAAGTCATACAACAAATAACTGATCAAAGTGG
CATTAAACCAAAATTTCTTAGTAGGACTCCTGCATAGAATGTTTAGATAGACGTGAAAGTTGTT
AAGAGGAACAGCAAGAGAGAAACTTGTTCTTTGGAAGTCTTTCGTGCTACATTATACCTCCATC
AGAGTAAGACAGCTTAGGCACTCCTAAGAGGAAAGGTCTGTGGAGATGACATGAATCCGAATTC
TACACTTCCAAATCAAATAGGTAAAAGGGTGGCATACATCACAGAAAAACATTTCAGCTGCAGT
CACCAACTTGAAAAGCGAGTGAGTAGGAGTTTGTCACACTGCCATGTACCAGACTGGAAATGCA
TTTCCTACCAATTACACATTTGGTGTGGGGGAATGGTGATGTCATTTTTTGACAGGATTTTATT
TTGTGTGCATGCGTTCTGCTCCAAGTGTCACAATTCTGGTTACAATAATTATAATATTTGGAGT
TACTACTAAGACTTTCCTGAAAGAGGTGTATTGTACCAAATTTTGTAACATAAAAAAATACTAA
ATGATCTTAAAGCTTCCTAAATTGTGAAAAGGGTATGTGCTAACATCTCAGAACTTTAGACCTG
CTTGTTGTCATCTTTACCGATCTCTGATGATAAATGCAGAAGGGATCTGAGAGTTTTTAAAGCA
AGTAGAGTCAATCAGAGTTTTGAACATCATAGTAATACTTCCGTGATTCAGAGTTAGATCATAT
AAATCAAAGTAACAATTTGGATTTTTTTTAAACAACAATATCATAACTGTCATAAAACAGATGG
TCCAACCCCAGGAGCAGATAATAACTTGGGCAGCTCTGTGGGGAACAAGATGGGGAAAACAACT
GTTCTAACTGCCCACTAGAACAGTGGTTTCAACTACTACAATTCTCAGTGTTTGAGAGGTACAA
GGGAAGAAAGGACTATGTGGATCCCTTGTGGCTATGCAGATACCTACCTCACAGAGTTGTTGTA
GAAGACTGGTGGTTTGGTTCAAACCTTGTGATTAAAGAGTTTGTCAAGCATTTTATTCTTTTGA
ATAAAAGCAACATATCTAAAACATT

hide sequence

RefSeq Acc Id:

XM_008976901 ⟹ XP_008975149

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	8	39,545,140 - 39,588,163 (-)	NCBI
Mhudiblu_PPA_v0	8	42,101,572 - 42,145,302 (-)	NCBI

Sequence:

show sequence

AGAAAGGGGACGTCTAGTGGGTTGCCCGGGAGGGGTGGCGGGAGCGGTCCCGGAAATAATCTGT
CCTCTGTCGCCGGGAACTGGCGAGGTAGTTCCTTCGCGGTGGAGAGGTACGTCCGGCGCGCGGC
GGCCACGCCCACCCTATCGGGGCCCGCGGAGCCGCGGACGGCGGGGTCTGGCCTTCTTGGGGTA
GCTCTGGCCGCCGAGGCTCTGCGGGGCGGCGGGAGTCGCCGCCTCCTTCCCCCCGGGCCCCTCC
CTCGTCTGGAAGCCCCAGAATCGCCCCGCGGCTGTCCGGAGTCGCCGGCGACGGTGGAGGGGCC
GACGCGGAGAGCGGCTCTAGACCTGGAATGGCCAAATATCAAGGTGAAGTTCAAAGTTTGAAAC
TGGATGATGATTCAGTTATAGAAGGAGTAAGCGACCAAGTACTTGTGGCAGTTGTGGTCAGTTT
CGCTTTGATTGCTACCCTGGTATATGCACTTTTCAGAAATGTACATCAAAACATTCACCCAGAA
AACCAGGAGCTAGTAAGGGTACTTCGAGAACAGCTTCAAACAGAACAGGATGCACCTGCTGCCG
CTCGACAGCAGTTCTACACTGACATGTACTGTCCCATCTGCCTGCACCAAGCCTCCTTCCCGGT
GGAGACCAACTGTGGACATCTTTTTTGTGGTGCCTGCATTGTTGCTTACTGGCGATATGGTTCA
TGGCTTGGGGCAATCAGTTGTCCAATCTGTAGACAAACGGTAACCTTACTCCTAACAGTATTTG
GTGAAGATGATCAGTCTCAGGATGTTGTGAGATTGCATCAGGATATTAATGATTATAACCGGAG
ATTCTCAGGGCAACCCAGATCTATTATGGAGAGAATTATGGATCTACCCACTTTACTGAGGCAT
GCATTCAGGGAAATGTTTTCAGTCGGGGGCCTTTTCTGGATGTTTCGCATCAGGATAATACTTT
GTTTAATGGGAGCTTTTTTCTATCTTATATCACCTCTAGATTTTGTACCTGAAGCCTTGTTTGG
AATTCTAGGCTTTCTAGATGATTTCTTTGTCATCTTTTTATTGCTTATCTACATCTCTATTATG
TATCGAGAAGTGATAACCCAAAGGCTAACTAGATGAAAAAGAAAACAAAACTGAGTTTACTAGG
ATATCTGAGCTAATGTAGAACATCAAACAGAAGGACCCATGGCAGTATAAAGCAATGAAGCAAT
GGAGTATTATCTCACAAATATAAAACCACTATAAGACAAACATTTGATTATCACTTGACAAATA
CCTAGGTATAACTGGAATTTTCATGTTTGAAGTTCTAATATTAAGTTTAGAATTATAATGATCT
ACAGTTGTATCTTGATTCTATGTTGTCTGGAAAAAATATGGAATTATATAAAAAGGGATGCTTT
TATATATTTTTCTTTTCCCCAGAATTACTTAGATTAATTAGATGTATAGTAAAATATTGTTAAA
TGTCAGTTTATCCATCTTATCCTTCTCAGCAGGTACCTATATGATAATATATAGCTGTGAAACT
CATCTAAATATTTTTGTTACAATAAAATATTATATACTATTGGGGAAAATTCAGTATTTCTTTT
AGTGCTAGCTAAGTTTTGTGCATTTGGAGCAGTTCTGCTTTTTCATTCTGGTATAATTAATTAT
TTGCTATCAGCTGAAACTGAAAGAAGAAACTTGAACTTCATACTTCGATACCATATTCTAGTTT
ACAGAACATATTTTAATCAATAGAAGAATTAAGATGAAAAACATGGCCGGGCGGGGTGGCTCAT
GCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGTAGATCACAAGGTCAGGAGATCAGGACC
ATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTG
GCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATGGCGTAAACCCAGGAGG
TGGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAA
GATGAAAAACATTTATCTCCAGTCAGCACACTTGATGTTCACAGACATTTAAACAAGAGCTCAT
CCTTTCATAGTAGATATAAAAGTAATTTGTAAAGGGAAGATTGTTTTAGGAACCTGGGCAATGC
TGCAAACACAGAGTAGCCTGATGCATTTCTGAGGAAGGTGAATCTTCGTGTCTTTGAGCATCAA
GCCAATAGGAAGGTACTGGGAACGGTATTTACATTTGACAAAAGAAATTACTGGTTAGCTATAG
CAACAGATTGGACAAATTTGGTTAGTTTTCTGTTGTCAGAAATTTTTATAATACTGTCTCAGGA
TGGCAGCACACAGCTCAGATTCATGTCTTGAGCCAAACAAGTGAATGTATCTGAGAAGACTCAG
TACCACATGGTACTGGGAGATCTTACTCACTTCAGCTGGCATTGCTCATTAGTGAATGTATGAC
AGCAGGATGTGAGGGGATGCCCAGGAGTCAGTGTTAGCATTGTCATCTGAGATCACTGCTATTA
ATATCATCCATTAATTTATTAGTGAGCTTCACTATATGCAGACTGGGAGATAAGGAGAAAATCT
GTCACATTCTCTCCAGCTAATCAGATCAGCTACTAATTAATGAGATTCTGAATGAAATATCAAT
ATGTGTTTTTCTAATTTGGACCTAGGACAGAGCTGTTGCTTGTCAGAGAAAAACAATAATGCTT
AAACATAGCACATTATAATTAAAGCAGGTTTCTCACATACTTTTCATTTTATCCTTTGGATAAT
TTTGTGAGGAACGCAGGACACCAACTTCCCTTTCATAGATACAATCCCCATGCTATTGATGAAA
GTGTTTTTGAATGAAGTCATACAACAAATAACTGATCAAAGTGGCATTAAACCAAAATTTCTTA
GTAGGACTCCTGCATAGAATGTTTAGATAGACGTGAAAGTTGTTAAGAGGAACAGCAAGAGAGA
AACTTGTTCTTTGGAAGTCTTTCGTGCTACATTATACCTCCATCAGAGTAAGACAGCTTAGGCA
CTCCTAAGAGGAAAGGTCTGTGGAGATGACATGAATCCGAATTCTACACTTCCAAATCAAATAG
GTAAAAGGGTGGCATACATCACAGAAAAACATTTCAGCTGCAGTCACCAACTTGAAAAGCGAGT
GAGTAGGAGTTTGTCACACTGCCATGTACCAGACTGGAAATGCATTTCCTACCAATTACACATT
TGGTGTGGGGGAATGGTGATGTCATTTTTTGACAGGATTTTATTTTGTGTGCATGCGTTCTGCT
CCAAGTGTCACAATTCTGGTTACAATAATTATAATATTTGGAGTTACTACTAAGACTTTCCTGA
AAGAGGTGTATTGTACCAAATTTTGTAACATAAAAAAATACTAAATGATCTTAAAGCTTCCTAA
ATTGTGAAAAGGGTATGTGCTAACATCTCAGAACTTTAGACCTGCTTGTTGTCATCTTTACCGA
TCTCTGATGATAAATGCAGAAGGGATCTGAGAGTTTTTAAAGCAAGTAGAGTCAATCAGAGTTT
TGAACATCATAGTAATACTTCCGTGATTCAGAGTTAGATCATATAAATCAAAGTAACAATTTGG
ATTTTTTTTAAACAACAATATCATAACTGTCATAAAACAGATGGTCCAACCCCAGGAGCAGATA
ATAACTTGGGCAGCTCTGTGGGGAACAAGATGGGGAAAACAACTGTTCTAACTGCCCACTAGAA
CAGTGGTTTCAACTACTACAATTCTCAGTGTTTGAGAGGTACAAGGGAAGAAAGGACTATGTGG
ATCCCTTGTGGCTATGCAGATACCTACCTCACAGAGTTGTTGTAGAAGACTGGTGGTTTGGTTC
AAACCTTGTGATTAAAGAGTTTGTCAAGCATTTTATTCTTTTGAATAAAAGCAACATATCTAAA
ACATT

hide sequence

RefSeq Acc Id:

XM_014345932 ⟹ XP_014201418

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	8	39,541,485 - 39,588,157 (-)	NCBI
Mhudiblu_PPA_v0	8	42,097,900 - 42,145,195 (-)	NCBI

Sequence:

show sequence

GGGACGTCTAGTGGGTTGCCCGGGAGGGGTGGCGGGAGCGGTCCCGGAAATAATCTGTCCTCTG
TCGCCGGGAACTGGCGAGGTAGTTCCTTCGCGGTGGAGAGACCTGGAATGGCCAAATATCAAGG
TGAAGTTCAAAGTTTGAAACTGGATGATGATTCAGTTATAGAAGGAGTAAGCGACCAAGTACTT
GTGGCAGTTGTGGTCAGTTTCGCTTTGATTGCTACCCTGGTATATGCACTTTTCAGAAATGTAC
ATCAAAACATTCACCCAGAAAACCAGGAGCTAGTAAGGGTACTTCGAGAACAGCTTCAAACAGA
ACAGGATGCACCTGCTGCCGCTCGACAGCAGTTCTACACTGACATGTACTGTCCCATCTGCCTG
CACCAAGCCTCCTTCCCGGTGGAGACCAACTGTGGACATCTTTTTTGTGGTGCCTGCATTGTTG
CTTACTGGCGATATGGTTCATGGCTTGGGGCAATCAGTTGTCCAATCTGTAGACAAACGGTAAC
CTTACTCCTAACAGTATTTGGTGAAGATGATCAGTCTCAGGATGTTGTGAGATTGCATCAGGAT
ATTAATGATTATAACCGGAGATTCTCAGGGCAACCCAGATCTGATCACAGCGACCTTCCAGGCA
GTCTCCCAGGCCCCAAGTGCCTGGCTCCCTACATGCAACGCAGCCCGATGATCATCTCAAGTGT
GACTCTGCTGGAAAGCCTGCTCTCCCTTTCCCACAGAGTAAAGCTCACTCTGCTCCAGCCATCC
AGCCCTCCTTGCTGTCCTTTGAGCAGGCCGAAGACGCCCAGCCTCAGGAGCTCTGCCCTGGCCA
GTCCCTCTGACTGCTAGGCTCCTCCGCCGGGCATCCTCACAGCCAACTCTCACCAACTCCAGAT
CTTTGCACAATAGCCATTTCCTCTGTTAGGCCTGTCCTGTCCACCATAAGGAAACTTGCAACTC
CCTCAGCCCACAGAGCACCTCTCACCGGCTAACATACTCTGTGGTCACGTGTTTGCTATCTGCC
TCCCTAATGTCTTTGAGAACATTAGCTCCCTGAGGGCAGAAATCTCCTTCACTGACATATCCCA
AGCCCCCAGAACTATGCGTGCAGCATAGTCAGTAACTATTTGTTGAATCAATGAATGAGAAAAC
AATTTCAGGGAACTCTAAGTTGAAATACACTTTCTCAGTTCACAATGTTATCCATTCTGACTTT
TATCAGACACAGGCACAGAAGACCTCAGAGATATTCCCAGCGGTCTCAACATCCATGGTAATGC
TAATAAACTACTATT

hide sequence

RefSeq Acc Id:

XM_034966024 ⟹ XP_034821915

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	8	42,097,900 - 42,138,882 (-)	NCBI

RefSeq Acc Id:

XM_034966025 ⟹ XP_034821916

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	8	42,104,515 - 42,145,195 (-)	NCBI

RefSeq Acc Id:

XM_034966026 ⟹ XP_034821917

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	8	42,097,900 - 42,145,327 (-)	NCBI

RefSeq Acc Id:

XM_034966027 ⟹ XP_034821918

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	8	42,097,900 - 42,145,056 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008975148	(Get FASTA)	NCBI Sequence Viewer
	XP_008975149	(Get FASTA)	NCBI Sequence Viewer
	XP_014201418	(Get FASTA)	NCBI Sequence Viewer
	XP_034821915	(Get FASTA)	NCBI Sequence Viewer
	XP_034821916	(Get FASTA)	NCBI Sequence Viewer
	XP_034821917	(Get FASTA)	NCBI Sequence Viewer
	XP_034821918	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_014201418 ⟸ XM_014345932

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELVRVLR
EQLQTEQDAPAAARQQFYTDMYCPICLHQASFPVETNCGHLFCGACIVAYWRYGSWLGAISCPI
CRQTVTLLLTVFGEDDQSQDVVRLHQDINDYNRRFSGQPRSDHSDLPGSLPGPKCLAPYMQRSP
MIISSVTLLESLLSLSHRVKLTLLQPSSPPCCPLSRPKTPSLRSSALASPSDC

hide sequence

RefSeq Acc Id:

XP_008975149 ⟸ XM_008976901

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELVRVLR
EQLQTEQDAPAAARQQFYTDMYCPICLHQASFPVETNCGHLFCGACIVAYWRYGSWLGAISCPI
CRQTVTLLLTVFGEDDQSQDVVRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVG
GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRL
TR

hide sequence

RefSeq Acc Id:

XP_008975148 ⟸ XM_008976900

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELVRVLR
EQLQTEQDAPAAARQQFYTDMYCPICLHQASFPVETNCGHLFCGACIVAYWRYGSWLGAISCPI
CRQTVTLLLTVFGEDDQSQDVVRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVG
GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRL
TR

hide sequence

RefSeq Acc Id:	XP_034821917 ⟸ XM_034966026
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034821918 ⟸ XM_034966027
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034821915 ⟸ XM_034966024
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034821916 ⟸ XM_034966025
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSPPAP00000005889 ⟸ ENSPPAT00000026259

RefSeq Acc Id:

ENSPPAP00000005892 ⟸ ENSPPAT00000026275

RefSeq Acc Id:

ENSPPAP00000005890 ⟸ ENSPPAT00000026264

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000023858	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000005889	UniProtKB/TrEMBL
	ENSPPAP00000005890	ENTREZGENE, UniProtKB/TrEMBL
	ENSPPAP00000005892	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000026259	UniProtKB/TrEMBL
	ENSPPAT00000026264	UniProtKB/TrEMBL
	ENSPPAT00000026275	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	DUF1232	UniProtKB/TrEMBL
	RNF170	UniProtKB/TrEMBL
	Znf_C3HC4_RING-type	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	pps:100981910	UniProtKB/TrEMBL
NCBI Gene	RNF170	ENTREZGENE
PANTHER	PTHR22894	UniProtKB/TrEMBL
	PTHR22894:SF1	UniProtKB/TrEMBL
Pfam	DUF1232	UniProtKB/TrEMBL
	zf-C3HC4	UniProtKB/TrEMBL
PROSITE	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
UniProt	A0A2R8ZLQ8_PANPA	UniProtKB/TrEMBL
	A0A2R8ZMV7_PANPA	UniProtKB/TrEMBL
	A0A2R8ZSR0_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM