CTNNB1 (catenin beta 1) - Rat Genome Database

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Gene: CTNNB1 (catenin beta 1) Pan paniscus
Analyze
Symbol: CTNNB1
Name: catenin beta 1
RGD ID: 11824331
Description: ENCODES a protein that exhibits alpha-catenin binding (ortholog); cadherin binding (ortholog); delta-catenin binding (ortholog); INVOLVED IN bicellular tight junction assembly (ortholog); bone remodeling (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN altered Wnt signaling, canonical pathway; colorectal cancer pathway; E-cadherin signaling pathway; ASSOCIATED WITH Aberrant Crypt Foci (ortholog); adenocarcinoma (ortholog); adenoma (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: catenin beta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2241,160,670 - 41,201,708 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1341,165,431 - 41,206,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0341,104,940 - 41,145,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1341,372,368 - 41,414,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl341,373,726 - 41,414,030 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1BonoboAlzheimer's disease  ISOCtnnb1 (Mus musculus)9068941protein:decreased expression:nucleus:RGDPMID:11226152 and REF_RGD_ID:1302533
CTNNB1BonoboAlzheimer's disease  ISOCTNNB1 (Homo sapiens)9068941protein:increased expression:neuron and cytoplasm:RGDPMID:15781969 and REF_RGD_ID:10395258
CTNNB1BonoboAlzheimer's disease treatmentISOCtnnb1 (Rattus norvegicus)9068941protein:decreased expression:hippocampusRGDPMID:12610652 and REF_RGD_ID:10395276
CTNNB1Bonoboatherosclerosis amelioratesISOCtnnb1 (Mus musculus)9068941 RGDPMID:35854140 and REF_RGD_ID:242905195
CTNNB1BonoboBreast Neoplasms  ISOCTNNB1 (Homo sapiens)9068941protein:decreased expression:breastRGDPMID:17223851 and REF_RGD_ID:2289792
CTNNB1BonoboBreast Neoplasms disease_progressionISOCTNNB1 (Homo sapiens)9068941 RGDPMID:16707478 and REF_RGD_ID:2289831
CTNNB1Bonobocalcinosis  ISOCTNNB1 (Homo sapiens)9068941protein:increased expression:dermis:RGDPMID:18422975 and REF_RGD_ID:9068449
CTNNB1Bonobocolon adenocarcinoma  ISOCtnnb1 (Rattus norvegicus)9068941DNA:mutationRGDPMID:16886601 and REF_RGD_ID:1599637
CTNNB1Bonobocolorectal cancer treatmentISOCTNNB1 (Homo sapiens)9068941Human cells in mouse modelRGDPMID:32682784 and REF_RGD_ID:153297782
CTNNB1Bonobocolorectal cancer disease_progressionISOCtnnb1 (Rattus norvegicus)9068941protein:increased expression:cytoplasm and nucleusRGDPMID:17893236 and REF_RGD_ID:2289840
CTNNB1BonoboDiabetic Cardiomyopathies  ISOCtnnb1 (Rattus norvegicus)9068941mRNA and protein:increased expression:heartRGDPMID:25586361 and REF_RGD_ID:13524855
CTNNB1Bonobodilated cardiomyopathy  ISOCtnnb1 (Mus musculus)9068941 RGDPMID:20376467 and REF_RGD_ID:13524857
CTNNB1Bonoboendodermal sinus tumor  ISOCTNNB1 (Homo sapiens)9068941mRNA more ...RGDPMID:16822086 and REF_RGD_ID:2298800
CTNNB1BonoboEndometrial Neoplasms disease_progressionISOCTNNB1 (Homo sapiens)9068941 RGDPMID:16803534 and REF_RGD_ID:2298485
CTNNB1BonoboEndometrial Neoplasms  ISOCTNNB1 (Homo sapiens)9068941protein:increased expression:nucleusRGDPMID:17349568 and REF_RGD_ID:2289828
CTNNB1BonoboEndometrioid Carcinomas  ISOCTNNB1 (Homo sapiens)9068941DNA:mutationsRGDPMID:17418409 and REF_RGD_ID:2289817
CTNNB1Bonoboendometriosis  ISOCTNNB1 (Homo sapiens)9068941protein:increased expression:endometrium more ...RGDPMID:29462326 and REF_RGD_ID:150429593
CTNNB1BonoboExperimental Mammary Neoplasms  ISOCtnnb1 (Mus musculus)9068941DNA:missense mutations: :p.S33Y and p.S45FRGDPMID:18060046 and REF_RGD_ID:2289674
CTNNB1BonoboExperimental Mammary Neoplasms  ISOCtnnb1 (Mus musculus)9068941protein:increased expression:mammary glandRGDPMID:17510243 and REF_RGD_ID:2289816
CTNNB1Bonobofibrolamellar carcinoma  ISOCTNNB1 (Homo sapiens)9068941protein:increased tyrosine phosphorylation:exon:RGDPMID:19101982 and REF_RGD_ID:14402052
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1BonoboAdrenal Cortex Neoplasms  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Adrenal cortex neoplasmClinVarPMID:10192393 more ...
CTNNB1BonoboAlazami Syndrome  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Alazami syndromeClinVarPMID:23033978 more ...
CTNNB1BonoboAngiofibroma  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Juvenile nasopharyngeal angiofibromaClinVarPMID:25741868
CTNNB1Bonoboautosomal dominant intellectual developmental disorder 19  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10966653 more ...
CTNNB1Bonobocolon carcinoma  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10192393 more ...
CTNNB1Bonobocolorectal cancer  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:23033978 more ...
CTNNB1Bonobocolorectal cancer  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:23033978 more ...
CTNNB1Bonobocolorectal cancer  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:23033978 more ...
CTNNB1Bonobocongenital muscular dystrophy-dystroglycanopathy type A8  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a and 8ClinVarPMID:28492532
CTNNB1Bonobodesmoid tumor  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Desmoid tumorClinVarPMID:10398436 more ...
CTNNB1BonoboDevelopmental Disabilities  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:23033978 more ...
CTNNB1BonoboDevelopmental Disease  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental disorderClinVarPMID:23033978 more ...
CTNNB1BonoboEndometrial Intraepithelial Neoplasia  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Atypical endometrial hyperplasiaClinVarPMID:10398436 more ...
CTNNB1Bonoboexudative vitreoretinopathy 1  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:28492532 more ...
CTNNB1Bonoboexudative vitreoretinopathy 7  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:23033978 more ...
CTNNB1Bonobogallbladder cancer  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Gallbladder cancerClinVarPMID:10435629 and PMID:26822237
CTNNB1Bonobogenetic disease  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:21903672 more ...
CTNNB1Bonobohepatoblastoma  ISOCTNNB1 (Homo sapiens)8554872ClinVar Annotator: match by term: HepatoblastomaClinVarPMID:10192393 more ...
CTNNB1Bonobohepatocellular carcinoma  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10435629 more ...
CTNNB1Bonobohepatocellular carcinoma  ISOCTNNB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10027390 more ...
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1BonoboAberrant Crypt Foci  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10965019 more ...
CTNNB1Bonoboadenocarcinoma  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10965019 more ...
CTNNB1Bonoboadenoma  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10223192 and PMID:10965019
CTNNB1BonoboAdrenal Gland Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24747643
CTNNB1Bonoboadrenocortical carcinoma  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24747642
CTNNB1Bonoboangiosarcoma  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:13678655
CTNNB1BonoboAnimal Disease Models  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:29394407
CTNNB1BonoboBreast Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:12165863 and PMID:25330770
CTNNB1BonoboCecal Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:14688030
CTNNB1BonoboChemical and Drug Induced Liver Injury  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:19679878
CTNNB1BonoboColonic Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:12628520 more ...
CTNNB1BonoboColorectal Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10965019 more ...
CTNNB1BonoboCraniofacial Abnormalities  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:11262227
CTNNB1Bonobocraniopharyngioma  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24413733
CTNNB1Bonobodilated cardiomyopathy  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:29394407
CTNNB1BonoboDisease Progression  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:27738331 more ...
CTNNB1BonoboExperimental Liver Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:11280770 more ...
CTNNB1BonoboExperimental Neoplasms  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:35066776
CTNNB1BonoboFibrosis  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:29394407
CTNNB1Bonobohead and neck squamous cell carcinoma  ISOCTNNB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:34019859
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1Bonoboautism spectrum disorder  ISOCtnnb1 (Mus musculus)9068941 MouseDO 
CTNNB1Bonoboexudative vitreoretinopathy  ISOCtnnb1 (Mus musculus)9068941 MouseDO 
CTNNB1Bonobogranulosa cell tumor  ISOCtnnb1 (Mus musculus)9068941 MouseDO 


Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1Bonoboacinar cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboadherens junction assembly involved_inIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboadherens junction organization acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboanimal organ development acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboanterior/posterior axis specification acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboapoptotic signaling pathway acts_upstream_ofIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboastrocyte-dopaminergic neuron signaling involved_inIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobicellular tight junction assembly involved_inISOCTNNB1 (Canis lupus familiaris)9068941 PMID:8636221UniProtPMID:8636221
CTNNB1Bonobobone remodeling  ISOCtnnb1 (Rattus norvegicus)9068941 RGDPMID:29224185 and REF_RGD_ID:13792728
CTNNB1Bonobobone resorption acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobranching involved in blood vessel morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobranching involved in ureteric bud morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOMGI:2148567 and MGI:35771069068941 PMID:19690384MGIPMID:19690384
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOMGI:1093309068941 PMID:16678101MGIPMID:16678101
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOMGI:1261834 and MGI:989549068941 PMID:19686689MGIPMID:19686689
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOCtnnb1 (Mus musculus)9068941 PMID:19060336 and PMID:19619491MGIPMID:19060336 and PMID:19619491
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOCtnnb1 (Mus musculus)9068941 PMID:12235125 more ...MGIPMID:12235125 more ...
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOMGI:989579068941 PMID:20454446MGIPMID:20454446
CTNNB1Bonobocanonical Wnt signaling pathway involved_inIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocanonical Wnt signaling pathway acts_upstream_of_or_withinISOMGI:24460849068941 PMID:16818445MGIPMID:16818445
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1Bonoboadherens junction  ISOCtnnb1 (Rattus norvegicus)9068941 RGDPMID:12533412 more ...
CTNNB1Bonoboadherens junction  ISOCtnnb1 (Rattus norvegicus)9068941MMO:0000683RGDPMID:12960056 and REF_RGD_ID:150530287
CTNNB1Bonoboadherens junction located_inIEAUniProtKB-SubCell:SL-0009150520179 UniProtGO_REF:0000044
CTNNB1Bonoboadherens junction located_inIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboadherens junction located_inIEAARBA:ARBA00028426150520179 UniProtGO_REF:0000117
CTNNB1Bonoboapical junction complex located_inIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboapical part of cell located_inIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboapical plasma membrane  ISOCtnnb1 (Rattus norvegicus)9068941MMO:0000538RGDPMID:12960056 and REF_RGD_ID:150530287
CTNNB1Bonoboapicolateral plasma membrane located_inIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobasolateral plasma membrane located_inIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobeta-catenin destruction complex part_ofIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobeta-catenin-ICAT complex part_ofIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobeta-catenin-TCF complex part_ofIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobeta-catenin-TCF7L2 complex part_ofIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonobobicellular tight junction located_inIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocatenin complex part_ofIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocell cortex located_inIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocell junction located_inIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocell periphery located_inIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocell projection membrane located_inIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
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Molecular Function
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNNB1Bonoboalpha-catenin binding  ISOCtnna1 (Rattus norvegicus)9068941 RGDPMID:12960056 and REF_RGD_ID:150530287
CTNNB1Bonoboalpha-catenin binding enablesIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocadherin binding  ISOCdh2 (Rattus norvegicus)9068941 RGDPMID:12533412 and REF_RGD_ID:1626295
CTNNB1Bonobocadherin binding enablesIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobocadherin binding enablesIEAInterPro:IPR013284150520179 InterProGO_REF:0000002
CTNNB1Bonobocadherin binding  ISOCdh1 (Rattus norvegicus)9068941 RGDPMID:12960056 and REF_RGD_ID:150530287
CTNNB1Bonobocadherin binding  ISOCtnnb1 (Rattus norvegicus)9068941 RGDPMID:12123611 more ...
CTNNB1Bonobochromatin binding enablesIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1Bonobodelta-catenin binding  ISOCtnnd1 (Rattus norvegicus)9068941 RGDPMID:12960056 and REF_RGD_ID:150530287
CTNNB1Bonobodisordered domain specific binding enablesIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1BonoboDNA-binding transcription factor binding enablesIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboenzyme binding enablesIEAUniProtKB:P35222 more ...150520179 EnsemblGO_REF:0000107
CTNNB1Bonobohistone methyltransferase binding enablesIEAUniProtKB:Q02248 and ensembl:ENSMUSP00000007130150520179 EnsemblGO_REF:0000107
CTNNB1BonoboI-SMAD binding enablesIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonoboionotropic glutamate receptor binding  ISOGrin2b (Rattus norvegicus)9068941 RGDPMID:20007479 and REF_RGD_ID:4107027
CTNNB1Bonobokinase binding enablesIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
CTNNB1Bonobomolecular function activator activity enablesISOCtnnb1 (Mus musculus)9068941 PMID:21075118DisProtPMID:21075118
CTNNB1Bonobonitric-oxide synthase binding  ISONos2 (Rattus norvegicus)9068941 RGDPMID:15858215 and REF_RGD_ID:7777144
CTNNB1Bonobonitric-oxide synthase binding  ISONos3 (Rattus norvegicus)9068941 RGDPMID:15858215 and REF_RGD_ID:7777144
CTNNB1Bonobonuclear estrogen receptor binding enablesIEAUniProtKB:P35222 and ensembl:ENSP00000344456150520179 EnsemblGO_REF:0000107
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RGD Manual Annotations


  

Imported Annotations - PID (archival)

PMID:22301074   PMID:30032202  



CTNNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2241,160,670 - 41,201,708 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1341,165,431 - 41,206,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0341,104,940 - 41,145,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1341,372,368 - 41,414,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl341,373,726 - 41,414,030 (+)Ensemblpanpan1.1panPan2
CTNNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38341,199,505 - 41,240,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl341,194,741 - 41,260,096 (+)EnsemblGRCh38hg38GRCh38
GRCh37341,240,996 - 41,281,934 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36341,215,946 - 41,256,943 (+)NCBINCBI36Build 36hg18NCBI36
Build 34341,216,015 - 41,256,938NCBI
Celera341,179,363 - 41,220,269 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef341,285,983 - 41,326,988 (+)NCBIHuRef
CHM1_1341,191,513 - 41,232,505 (+)NCBICHM1_1
T2T-CHM13v2.0341,214,904 - 41,255,840 (+)NCBIT2T-CHM13v2.0
Ctnnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,762,466 - 120,789,573 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9120,758,282 - 120,789,573 (+)EnsemblGRCm39 Ensembl
GRCm389120,933,400 - 120,960,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,929,216 - 120,960,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,842,518 - 120,869,625 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369120,782,173 - 120,809,205 (+)NCBIMGSCv36mm8
Celera9121,404,098 - 121,431,499 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.19NCBI
Ctnnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,517,576 - 129,544,661 (+)NCBIGRCr8
mRatBN7.28120,640,008 - 120,667,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,639,995 - 120,667,111 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8126,248,801 - 126,258,310 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08124,447,834 - 124,457,343 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08122,278,384 - 122,287,893 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08129,601,511 - 129,628,378 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,617,812 - 129,627,372 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,798,888 - 128,825,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,978,161 - 125,987,670 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18125,997,897 - 126,007,407 (+)NCBI
Celera8119,795,816 - 119,805,325 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ctnnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542029,030,716 - 29,047,449 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542029,030,716 - 29,047,447 (-)NCBIChiLan1.0ChiLan1.0
CTNNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12310,559,722 - 10,572,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2310,559,718 - 10,572,927 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2310,596,271 - 10,609,470 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02310,821,172 - 10,860,317 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2310,821,086 - 10,860,327 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12310,656,868 - 10,670,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02310,798,400 - 10,811,602 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02310,790,373 - 10,803,572 (+)NCBIUU_Cfam_GSD_1.0
Ctnnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118196,856,510 - 196,896,035 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647329,999,562 - 30,038,293 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647329,999,542 - 30,034,610 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,164,277 - 25,208,311 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,163,550 - 25,208,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21327,623,189 - 27,667,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTNNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,679,488 - 2,725,034 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,684,022 - 2,723,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041164,464,011 - 164,505,060 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctnnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,875,257 - 77,887,234 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,876,361 - 77,887,228 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSPPAT00000047519   ⟹   ENSPPAP00000024694
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl341,373,726 - 41,414,030 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000047524   ⟹   ENSPPAP00000024699
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl341,397,635 - 41,398,459 (+)Ensembl
RefSeq Acc Id: XM_034956181   ⟹   XP_034812072
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2241,160,672 - 41,201,708 (+)NCBI
NHGRI_mPanPan1341,165,433 - 41,206,468 (+)NCBI
Mhudiblu_PPA_v0341,104,975 - 41,145,934 (+)NCBI
RefSeq Acc Id: XM_034956182   ⟹   XP_034812073
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2241,160,670 - 41,201,708 (+)NCBI
NHGRI_mPanPan1341,165,431 - 41,206,468 (+)NCBI
Mhudiblu_PPA_v0341,104,975 - 41,145,934 (+)NCBI
RefSeq Acc Id: XM_034956183   ⟹   XP_034812074
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2241,160,672 - 41,201,708 (+)NCBI
NHGRI_mPanPan1341,165,435 - 41,206,468 (+)NCBI
Mhudiblu_PPA_v0341,104,975 - 41,145,934 (+)NCBI
RefSeq Acc Id: XM_055109713   ⟹   XP_054965688
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2241,160,711 - 41,201,708 (+)NCBI
NHGRI_mPanPan1341,165,473 - 41,206,468 (+)NCBI
Protein RefSeqs XP_034812072 (Get FASTA)   NCBI Sequence Viewer  
  XP_034812073 (Get FASTA)   NCBI Sequence Viewer  
  XP_034812074 (Get FASTA)   NCBI Sequence Viewer  
  XP_054965688 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024694.1
  ENSPPAP00000024699.1
RefSeq Acc Id: XP_034812072   ⟸   XM_034956181
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BC13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034812073   ⟸   XM_034956182
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BC13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034812074   ⟸   XM_034956183
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BC13 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000024694   ⟸   ENSPPAT00000047519
Ensembl Acc Id: ENSPPAP00000024699   ⟸   ENSPPAT00000047524



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000035475 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047519.1 UniProtKB/TrEMBL
  ENSPPAT00000047524.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  Beta-catenin UniProtKB/TrEMBL
NCBI Gene CTNNB1 ENTREZGENE
PANTHER PTHR45976 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PRINTS BCATNINFAMLY UniProtKB/TrEMBL
PROSITE ARM_REPEAT UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9BC13 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BC18_PANPA UniProtKB/TrEMBL
1 to 17 of 17 rows