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ONTOLOGY REPORT - ANNOTATIONS


Term:diencephalon development
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Accession:GO:0021536 term browser browse the term
Definition:The process whose specific outcome is the progression of the diencephalon over time, from its formation to the mature structure. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex.


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diencephalon development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema5a semaphorin 5A IMP PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:98953 (MGI:3772426|PMID:18094027) RGD PMID:18094027 MGI:3772426 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:102764 (MGI:3772426|PMID:18094027) RGD PMID:18094027 MGI:3772426 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
adenohypophysis development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 ISO MGI:3576789 (MGI:3576468|PMID:9140068) RGD PMID:9140068 MGI:3576468 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642
JBrowse link
G Ghrh growth hormone releasing hormone TAS
ISO
MGI:3051561 (MGI:3607618|PMID:15985453) RGD PMID:15985453, PMID:12511850 MGI:3607618, RGD:1601329 NCBI chr 3:153,449,124...153,468,794
Ensembl chr 3:153,449,125...153,468,794
JBrowse link
G Ghrhr growth hormone releasing hormone receptor ISO MGI:1856425 (MGI:51713|PMID:1504465), (MGI:54124|PMID:1270792), (MGI:63703|PMID:1329576) RGD PMID:1270792, PMID:1329576, PMID:1504465 MGI:51713, MGI:54124, MGI:63703 NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
JBrowse link
G Gsx1 GS homeobox 1 ISO MGI:2154448 (MGI:79250|PMID:8631293) RGD PMID:8631293 MGI:79250 NCBI chr12:9,605,873...9,607,168
Ensembl chr12:9,605,873...9,607,168
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IEA
ISO
GO_REF:0000107
MGI:3808031 (MGI:3827091|PMID:18996108)
Ensembl
RGD
PMID:18996108 GO_REF:0000107, MGI:3827091 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Pou1f1 POU class 1 homeobox 1 IMP RGD PMID:16216912 RGD:1601440 NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
JBrowse link
G Prop1 PROP paired-like homeobox 1 ISO (MGI:3827091|PMID:18996108) RGD PMID:18996108 MGI:3827091 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Slc6a3 solute carrier family 6 member 3 ISO MGI:2386303 (MGI:894559|PMID:9247269) RGD PMID:9247269 MGI:894559 NCBI chr 1:32,323,011...32,363,983
Ensembl chr 1:32,321,580...32,363,983
JBrowse link
G Sox2 SRY-box transcription factor 2 IEP
ISO
MGI:2449045 (MGI:3689142|PMID:16932809) RGD PMID:16932809, PMID:21815952 MGI:3689142, RGD:8661681 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
adenohypophysis morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Duox2 dual oxidase 2 IEA
ISO
GO_REF:0000107
MGI:3712359 (MGI:3712355|PMID:17440044)
Ensembl
RGD
PMID:17440044 GO_REF:0000107, MGI:3712355 NCBI chr 3:114,218,187...114,237,808
Ensembl chr 3:114,218,193...114,235,933
JBrowse link
cell migration in diencephalon term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 ISS
ISO
GO_REF:0000024
(MGI:4887555|PMID:19046377)
UniProt
RGD
PMID:19046377 GO_REF:0000024, MGI:4887555 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
corticotropin hormone secreting cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 IEA
ISO
GO_REF:0000107
(MGI:1202291|PMID:9463347)
Ensembl
RGD
PMID:9463347 GO_REF:0000107, MGI:1202291 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:1202291|PMID:9463347) RGD PMID:9463347 MGI:1202291 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO (MGI:1202291|PMID:9463347) RGD PMID:9463347 MGI:1202291 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
diencephalon morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx1 orthodenticle homeobox 1 IEA
ISO
GO_REF:0000107
MGI:97451 (MGI:4848254|PMID:20816794)
Ensembl
RGD
PMID:20816794 GO_REF:0000107, MGI:4848254 NCBI chr14:106,861,556...106,864,933
Ensembl chr14:106,861,676...106,864,892
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:97450 (MGI:4848254|PMID:20816794) RGD PMID:20816794 MGI:4848254 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:2181440|MGI:3052123 (MGI:3051708|PMID:15240551) RGD PMID:15240551 MGI:3051708 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
globus pallidus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox IEA
ISO
GO_REF:0000107
MGI:2679972 (MGI:3709215|PMID:17460091)
Ensembl
RGD
PMID:17460091 GO_REF:0000107, MGI:3709215 NCBI chr  X:62,363,757...62,376,139
Ensembl chr  X:62,363,757...62,376,143
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 IEP RGD PMID:10482766 RGD:9685780 NCBI chr 1:102,414,352...102,456,718
Ensembl chr 1:102,414,625...102,456,411
JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 IEP RGD PMID:10482766 RGD:9685780 NCBI chr 7:54,978,453...55,159,362
Ensembl chr 7:54,980,120...55,159,351
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:3653645 (MGI:4437145|PMID:20181579)
(PMID:11854319)
Ensembl
RGD
PMID:11854319, PMID:20181579 GO_REF:0000107, MGI:4437145 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:4850173 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:4850173 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:4850173 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
habenula development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEA
ISO
GO_REF:0000107
(MGI:4398759|PMID:19906978)
Ensembl
RGD
PMID:19906978 GO_REF:0000107, MGI:4398759 NCBI chr 3:43,111,258...43,128,391
Ensembl chr 3:43,111,240...43,119,159
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155 (MGI:5662366|PMID:24528677)
Ensembl
RGD
PMID:24528677 GO_REF:0000107, MGI:5662366 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pou4f1 POU class 4 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:2387665|MGI:3512089 (MGI:4398759|PMID:19906978)
Ensembl
RGD
PMID:19906978 GO_REF:0000107, MGI:4398759 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
hypophysis morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prop1 PROP paired-like homeobox 1 IBA
ISO
PMID:21873635
MGI:3690463 (MGI:3690195|PMID:16678101)
RGD PMID:16678101, PMID:21873635 MGI:3690195, RGD:13792537 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:3043884|PMID:15037319)
Ensembl
RGD
PMID:15037319 GO_REF:0000107, MGI:3043884 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
hypothalamus cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hap1 huntingtin-associated protein 1 IEA
ISO
GO_REF:0000107
(MGI:5560429|PMID:24355921)
Ensembl
RGD
PMID:24355921 GO_REF:0000107, MGI:5560429 NCBI chr10:88,257,975...88,266,210
Ensembl chr10:88,257,976...88,266,210
JBrowse link
G Otp orthopedia homeobox ISO MGI:2180541 (MGI:1347696|PMID:10557207) RGD PMID:10557207 MGI:1347696 NCBI chr 2:24,546,393...24,554,953
Ensembl chr 2:24,546,536...24,554,683
JBrowse link
G Pou3f2 POU class 3 homeobox 2 IEA
ISO
GO_REF:0000107
MGI:1857996 (MGI:77941|PMID:8543156)
Ensembl
RGD
PMID:8543156 GO_REF:0000107, MGI:77941 NCBI chr 5:36,677,452...36,683,356
Ensembl chr 5:36,681,528...36,683,356
JBrowse link
G Prop1 PROP paired-like homeobox 1 IBA
ISO
PMID:21873635
MGI:1856842 (MGI:85929|PMID:9067988)
RGD PMID:9067988, PMID:21873635 MGI:85929, RGD:13792537 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
hypothalamus cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 ISS
ISO
GO_REF:0000024
(MGI:4887555|PMID:19046377)
UniProt
RGD
PMID:19046377 GO_REF:0000024, MGI:4887555 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:1857846 (MGI:3790896|PMID:18206388) RGD PMID:18206388 MGI:3790896 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
hypothalamus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1857429 (MGI:3054131|PMID:15342910)
Ensembl
RGD
PMID:15342910 GO_REF:0000107, MGI:3054131 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Crh corticotropin releasing hormone IEP RGD PMID:20002962 RGD:5130950 NCBI chr 2:104,459,999...104,461,863
Ensembl chr 2:104,459,999...104,461,863
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IEP RGD PMID:20002962 RGD:5130950 NCBI chr10:92,191,473...92,233,662
Ensembl chr10:92,191,718...92,232,645
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IEP RGD PMID:20002962 RGD:5130950 NCBI chr 4:85,286,371...85,329,374
Ensembl chr 4:85,286,372...85,329,362
JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:15804399 RGD:4891928 NCBI chr 8:58,744,849...58,772,408
Ensembl chr 8:58,744,849...58,772,408
JBrowse link
G Esr2 estrogen receptor 2 IEP RGD PMID:12960049 RGD:1582276 NCBI chr 6:99,163,953...99,214,711
Ensembl chr 6:99,164,357...99,214,251
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IEP RGD PMID:8946059 RGD:2313681 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Gsx1 GS homeobox 1 ISO MGI:2154448 (MGI:79250|PMID:8631293) RGD PMID:8631293 MGI:79250 NCBI chr12:9,605,873...9,607,168
Ensembl chr12:9,605,873...9,607,168
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:23291449 RGD:7207858 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IEP RGD PMID:12551846 RGD:5688241 NCBI chr 6:28,677,563...28,931,844
Ensembl chr 6:28,677,540...28,931,843
JBrowse link
G Nkx2-6 NK2 homeobox 6 ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:51,034,620...51,038,715
Ensembl chr15:51,034,620...51,038,704
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ISO
IEA
(PMID:20512159)
GO_REF:0000107
RGD
Ensembl
PMID:20512159 GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620
JBrowse link
G Rax retina and anterior neural fold homeobox IEA
ISO
GO_REF:0000107
MGI:1856862 (MGI:54368|PMID:925203)
Ensembl
RGD
PMID:925203 GO_REF:0000107, MGI:54368 NCBI chr18:61,638,352...61,642,056
Ensembl chr18:61,638,352...61,642,056
JBrowse link
G Reln reelin IEP RGD PMID:10436054 RGD:634730 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
G Sox3 SRY-box transcription factor 3 ISO (MGI:3033563|PMID:14981518) RGD PMID:14981518 MGI:3033563 NCBI chr  X:144,035,162...144,037,364
Ensembl chr  X:144,035,883...144,037,294
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15804399, PMID:8770891 RGD:4891928, RGD:4892048 NCBI chr 1:36,320,504...36,354,694
Ensembl chr 1:36,320,461...36,354,756
JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:15804399 RGD:4891928 NCBI chr 6:25,279,635...25,315,501
Ensembl chr 6:25,279,626...25,315,511
JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,779,132...38,782,489
Ensembl chr10:38,779,132...38,782,419
JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubb ubiquitin B ISO MGI:3774112 (MGI:3776935|PMID:18299572) RGD PMID:18299572 MGI:3776935 NCBI chr10:48,880,231...48,881,896
Ensembl chr10:48,881,049...48,881,881
JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO MGI:2158714 (MGI:3721829|PMID:12097474) RGD PMID:12097474 MGI:3721829 NCBI chr 2:189,088,570...189,096,785
Ensembl chr 2:189,088,570...189,096,785
JBrowse link
mammillary axonal complex development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zeb2 zinc finger E-box binding homeobox 2 ISO MGI:2387499|MGI:2668659 (MGI:5629993|PMID:25741725) RGD PMID:25741725 MGI:5629993 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
mammillary body development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 ISS
ISO
GO_REF:0000024
(MGI:3589689|PMID:15654859), (PMID:11170346)
UniProt
RGD
PMID:11170346, PMID:15654859 GO_REF:0000024, MGI:3589689 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
mammillothalamic axonal tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 ISS
ISO
GO_REF:0000024
(MGI:1352733|PMID:10662642), (MGI:1931655|PMID:11170346)
UniProt
RGD
PMID:10662642, PMID:11170346 GO_REF:0000024, MGI:1352733, MGI:1931655 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
neurohypophysis development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otp orthopedia homeobox ISO MGI:2180541 (MGI:1347696|PMID:10557207) RGD PMID:10557207 MGI:1347696 NCBI chr 2:24,546,393...24,554,953
Ensembl chr 2:24,546,536...24,554,683
JBrowse link
G Pou3f2 POU class 3 homeobox 2 IEA
ISO
GO_REF:0000107
MGI:1857996 (MGI:77941|PMID:8543156)
Ensembl
RGD
PMID:8543156 GO_REF:0000107, MGI:77941 NCBI chr 5:36,677,452...36,683,356
Ensembl chr 5:36,681,528...36,683,356
JBrowse link
pituitary gland development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1 adenylate cyclase activating polypeptide 1 IEP RGD PMID:18160680 RGD:2325274 NCBI chr 9:121,705,897...121,725,736
Ensembl chr 9:121,706,979...121,725,716
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP RGD PMID:17180597 RGD:2306413 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEP RGD PMID:17180597 RGD:2306413 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:1306869|PMID:9806931)
Ensembl
RGD
PMID:9806931 GO_REF:0000107, MGI:1306869 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158342|MGI:2158390 (MGI:3709795|PMID:17359964) RGD PMID:17359964 MGI:3709795 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Cdh1 cadherin 1 IEP RGD PMID:17373711 RGD:2289637 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO MGI:2176173|MGI:2181395 (MGI:3611103|PMID:16141355) RGD PMID:16141355 MGI:3611103 NCBI chr 9:71,229,753...71,298,994
Ensembl chr 9:71,230,108...71,293,435
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IEP RGD PMID:8946059 RGD:2313681 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647 (MGI:3688470|PMID:11062007) RGD PMID:11062007 MGI:3688470 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:2179995|MGI:3628639 (MGI:3625416|PMID:16543408) RGD PMID:16543408 MGI:3625416 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Gli1 GLI family zinc finger 1 ISO MGI:95728 (MGI:1354188|PMID:10725236) RGD PMID:10725236 MGI:1354188 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:95727 (MGI:1354188|PMID:10725236) RGD PMID:10725236 MGI:1354188 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO MGI:104876|MGI:2149672 (MGI:3664138|PMID:17015435), (MGI:3712393|PMID:17426285) RGD PMID:17015435, PMID:17426285 MGI:3664138, MGI:3712393 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hesx1 HESX homeobox 1 ISO
IBA
(PMID:26781211)
MGI:102764|MGI:1931124|MGI:3822474|MGI:3822475 (MGI:1206234|PMID:9620767), (MGI:2154557|PMID:11731482), (MGI:3821506|PMID:18775421), (MGI:3821905|PMID:19093031), (MGI:4440397|PMID:20181723)
PMID:21873635
RGD PMID:9620767, PMID:11731482, PMID:18775421, PMID:19093031, PMID:20181723, PMID:26781211, PMID:21873635 MGI:1206234, MGI:2154557, MGI:3821506, MGI:3821905, MGI:4440397, RGD:13792537 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO MGI:1856426 (MGI:54708|PMID:504232) RGD PMID:504232 MGI:54708 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Inhbb inhibin subunit beta B IEP RGD PMID:18160680 RGD:2325274 NCBI chr13:35,436,532...35,442,222
Ensembl chr13:35,436,532...35,442,222
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:2182246 (MGI:1306869|PMID:9806931) RGD PMID:9806931 MGI:1306869 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Kdm1a lysine demethylase 1A ISO MGI:3711561 (MGI:3710033|PMID:17392792) RGD PMID:17392792 MGI:3710033 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Lhx3 LIM homeobox 3 ISO MGI:2385819 (MGI:3771226|PMID:18037398) RGD PMID:18037398 MGI:3771226 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Msx1 msh homeobox 1 IEP RGD PMID:16451220 RGD:5132608 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1857494 (MGI:1306869|PMID:9806931)
Ensembl
RGD
PMID:9806931 GO_REF:0000107, MGI:1306869 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
MGI:1862000 (MGI:3709795|PMID:17359964)
Ensembl
RGD
PMID:17359964 GO_REF:0000107, MGI:3709795 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1934347 (MGI:1350715|PMID:10588713)
Ensembl
RGD
PMID:10588713 GO_REF:0000107, MGI:1350715 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 IEP RGD PMID:15208361 RGD:2308902 NCBI chr 2:91,450,162...91,497,091
Ensembl chr 2:91,450,162...91,497,091
JBrowse link
G Pitx1 paired-like homeodomain 1 ISO MGI:1934200 (MGI:1332284|PMID:10049363) RGD PMID:10049363 MGI:1332284 NCBI chr17:8,873,184...8,884,428
Ensembl chr17:8,878,270...8,884,423
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:1857844|MGI:1857846|MGI:2384494 (MGI:1344731|PMID:10498698), (MGI:1345532|PMID:10499586) RGD PMID:10498698, PMID:10499586 MGI:1344731, MGI:1345532 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Pou1f1 POU class 1 homeobox 1 ISO MGI:1856024 (MGI:3625414|PMID:16556738) RGD PMID:16556738 MGI:3625414 NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
JBrowse link
G Prop1 PROP paired-like homeobox 1 ISO MGI:1856842 (MGI:2154557|PMID:11731482) RGD PMID:11731482 MGI:2154557 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO MGI:3583755 (MGI:3664138|PMID:17015435) RGD PMID:17015435 MGI:3664138 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (PMID:12065233) RGD PMID:12065233 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:96071 (MGI:3821506|PMID:18775421) RGD PMID:18775421 MGI:3821506 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (PMID:18285410) RGD PMID:18285410 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Sox3 SRY-box transcription factor 3 ISO (MGI:3033563|PMID:14981518) RGD PMID:14981518 MGI:3033563 NCBI chr  X:144,035,162...144,037,364
Ensembl chr  X:144,035,883...144,037,294
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:36,320,504...36,354,694
Ensembl chr 1:36,320,461...36,354,756
JBrowse link
G Tbx19 T-box transcription factor 19 ISO (MGI:2137424|PMID:11447259) RGD PMID:11447259 MGI:2137424 NCBI chr13:83,403,263...83,426,305
Ensembl chr13:83,403,264...83,425,641
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:1926344 (MGI:3763872|PMID:17919533) RGD PMID:17919533 MGI:3763872 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
somatotropin secreting cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrhr growth hormone releasing hormone receptor ISO MGI:1856425 (MGI:55682|PMID:6194978), (MGI:63474|PMID:6116352) RGD PMID:6116352, PMID:6194978 MGI:55682, MGI:63474 NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
JBrowse link
G Pou1f1 POU class 1 homeobox 1 ISO MGI:2158737 (MGI:3664138|PMID:17015435) RGD PMID:17015435 MGI:3664138 NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
JBrowse link
somatotropin secreting cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou1f1 POU class 1 homeobox 1 ISO MGI:1856024 (MGI:55682|PMID:6194978), (MGI:80583|PMID:1334535) RGD PMID:1334535, PMID:6194978 MGI:55682, MGI:80583 NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
JBrowse link
G Prop1 PROP paired-like homeobox 1 IBA
ISO
PMID:21873635
MGI:1856842 (MGI:55682|PMID:6194978)
RGD PMID:6194978, PMID:21873635 MGI:55682, RGD:13792537 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
MGI:1857453 (MGI:3777488|PMID:18351662)
Ensembl
RGD
PMID:18351662 GO_REF:0000107, MGI:3777488 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx2 paired-like homeodomain 2 ISO MGI:1857846 (MGI:3790896|PMID:18206388) RGD PMID:18206388 MGI:3790896 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
subthalamus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,779,132...38,782,489
Ensembl chr10:38,779,132...38,782,419
JBrowse link
thalamus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap2 contactin associated protein 2 ISO (PMID:18179893) RGD PMID:18179893 NCBI chr 4:74,700,539...77,025,463 JBrowse link
G Foxb1 forkhead box B1 ISO (PMID:11170346) RGD PMID:11170346 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:1857634|MGI:3840448 (MGI:3840022|PMID:19279136) RGD PMID:19279136 MGI:3840022 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Kif5a kinesin family member 5A IEP RGD PMID:9349526 RGD:12792964 NCBI chr 7:70,515,832...70,552,897
Ensembl chr 7:70,513,343...70,556,827
JBrowse link
G Lrp6 LDL receptor related protein 6 IBA
ISO
PMID:21873635
MGI:2156191 (MGI:3629823|PMID:15342729)
RGD PMID:15342729, PMID:21873635 MGI:3629823, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Ncam1 neural cell adhesion molecule 1 IDA RGD PMID:17292800 RGD:2326015 NCBI chr 8:53,836,797...54,134,881
Ensembl chr 8:53,839,098...53,901,358
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO MGI:2677822 (MGI:1926554|PMID:11030619) RGD PMID:11030619 MGI:1926554 NCBI chr10:48,629,121...48,772,890
Ensembl chr10:48,629,121...48,772,890
JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO (PMID:16901643) RGD PMID:16901643 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO (MGI:3840719|PMID:19357274) RGD PMID:19357274 MGI:3840719 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
G Ptchd1 patched domain containing 1 ISO (MGI:5779981|PMID:27007844) RGD PMID:27007844 MGI:5779981 NCBI chr  X:42,558,912...42,610,430
Ensembl chr  X:42,558,931...42,614,242
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:10051750 RGD:10043838 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:108075|MGI:1934268|MGI:2176173 (MGI:3840719|PMID:19357274)
Ensembl
RGD
PMID:19357274 GO_REF:0000107, MGI:3840719 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:2176173|MGI:3576373 (MGI:3840719|PMID:19357274)
Ensembl
RGD
PMID:19357274 GO_REF:0000107, MGI:3840719 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:36,320,504...36,354,694
Ensembl chr 1:36,320,461...36,354,756
JBrowse link
G Tal2 TAL bHLH transcription factor 2 ISO MGI:2684532 (MGI:1927272|PMID:11071772) RGD PMID:11071772 MGI:1927272 NCBI chr 5:70,592,871...70,599,428
Ensembl chr 5:70,592,871...70,599,428
JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,779,132...38,782,489
Ensembl chr10:38,779,132...38,782,419
JBrowse link
thyroid-stimulating hormone-secreting cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 IEA
ISO
GO_REF:0000107
(MGI:1202291|PMID:9463347)
Ensembl
RGD
PMID:9463347 GO_REF:0000107, MGI:1202291 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:1202291|PMID:9463347) RGD PMID:9463347 MGI:1202291 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO (MGI:1202291|PMID:9463347) RGD PMID:9463347 MGI:1202291 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
MGI:1857453 (MGI:3777488|PMID:18351662)
Ensembl
RGD
PMID:18351662 GO_REF:0000107, MGI:3777488 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        diencephalon development 94
          cell migration in diencephalon 1
          determination of left/right asymmetry in diencephalon 0
          diencephalon morphogenesis + 6
          epithalamus development + 3
          globus pallidus development 4
          hypothalamus development + 28
          mammillary body development + 2
          pineal gland development 0
          pituitary gland development + 49
          subthalamus development + 2
          thalamus development + 18
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            nervous system development 2719
              central nervous system development 1260
                brain development 965
                  forebrain development 506
                    diencephalon development 94
                      cell migration in diencephalon 1
                      determination of left/right asymmetry in diencephalon 0
                      diencephalon morphogenesis + 6
                      epithalamus development + 3
                      globus pallidus development 4
                      hypothalamus development + 28
                      mammillary body development + 2
                      pineal gland development 0
                      pituitary gland development + 49
                      subthalamus development + 2
                      thalamus development + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.