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ONTOLOGY REPORT - ANNOTATIONS

Term:thalamus development
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Accession:GO:0021794 term browser browse the term
Definition:The process in which the thalamus changes over time, from its initial formation to its mature state.


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thalamus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893) RGD PMID:18179893 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (MGI:1931655|PMID:11170346) RGD PMID:11170346 MGI:1931655 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634|MGI:3840448 (MGI:3840022|PMID:19279136) RGD PMID:19279136 MGI:3840022 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Kif5a kinesin family member 5A IEP RGD PMID:9349526 RGD:12792964 NCBI chr 7:63,051,894...63,089,024
Ensembl chr 7:63,049,424...63,092,858 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (MGI:3629823|PMID:15342729) RGD PMID:15342729 MGI:3629823 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Ncam1 neural cell adhesion molecule 1 IDA RGD PMID:17292800 RGD:2326015 NCBI chr 8:49,865,629...50,165,687
Ensembl chr 8:49,865,633...50,166,014 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within ISO MGI:2677822 (MGI:1926554|PMID:11030619) RGD PMID:11030619 MGI:1926554 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) RGD PMID:16901643 MGI:3662936 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO (MGI:3840719|PMID:19357274) RGD PMID:19357274 MGI:3840719 NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152 		JBrowse link
G Ptchd1 patched domain containing 1 involved_in ISO (MGI:5779981|PMID:27007844) RGD PMID:27007844 MGI:5779981 NCBI chr  X:39,681,910...39,733,416
Ensembl chr  X:39,681,910...39,733,519 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:10051750 RGD:10043838 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:108075|MGI:1934268|MGI:2176173 (MGI:3840719|PMID:19357274)
GO_REF:0000107		 RGD
Ensembl		 PMID:19357274 GO_REF:0000107 MGI:3840719 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176173|MGI:3576373 (MGI:3840719|PMID:19357274)		 Ensembl
RGD		 PMID:19357274 GO_REF:0000107 MGI:3840719 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461 		JBrowse link
G Tal2 TAL bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:2684532 (MGI:1927272|PMID:11071772) RGD PMID:11071772 MGI:1927272 NCBI chr 5:68,411,012...68,417,569
Ensembl chr 5:68,411,012...68,417,569 		JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (MGI:3662936|PMID:16901643) RGD PMID:16901643 MGI:3662936 NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169 		JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO MGI:2158714 (MGI:3721829|PMID:12097474) RGD PMID:12097474 MGI:3721829 NCBI chr 2:175,181,402...175,189,619
Ensembl chr 2:175,181,402...175,189,619 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19748
    developmental process 6931
      anatomical structure development 6386
        thalamus development 18
          lateral geniculate nucleus development 1
Path 2
Term Annotations click to browse term
  biological_process 19748
    developmental process 6931
      anatomical structure development 6386
        multicellular organism development 5165
          system development 4436
            nervous system development 2706
              central nervous system development 1190
                brain development 890
                  forebrain development 549
                    diencephalon development 101
                      thalamus development 18
                        lateral geniculate nucleus development 1
paths to the root