Pcsk1 (proprotein convertase subtilisin/kexin type 1) - Rat Genome Database

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Gene: Pcsk1 (proprotein convertase subtilisin/kexin type 1) Rattus norvegicus
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Symbol: Pcsk1
Name: proprotein convertase subtilisin/kexin type 1
RGD ID: 3272
Description: Enables endopeptidase activity. Involved in several processes, including nervous system development; protein processing; and response to forskolin. Located in several cellular components, including perikaryon; perinuclear region of cytoplasm; and trans-Golgi network. Used to study hyperglycemia and type 2 diabetes mellitus. Biomarker of hyperglycemia; hyperthyroidism; hypothyroidism; islet cell tumor; and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in obesity and proprotein convertase 1/3 deficiency. Orthologous to human PCSK1 (proprotein convertase subtilisin/kexin type 1); PARTICIPATES IN altered energy homeostasis pathway; altered melanocortin system pathway; melanocortin system pathway; INTERACTS WITH (+)-pilocarpine; 1,2-dimethylhydrazine; 1,3-dinitrobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BDP; NEC 1; neuroendocrine convertase 1; PC1; PC3; prohormone convertase 1; prohormone convertase 3; proprotein convertase 1; Protein convertase subtilisin / kexin type I; Protein convertase subtilisin / kexin, type I
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr826,130,045 - 6,176,974 (+)NCBIGRCr8
mRatBN7.224,395,543 - 4,442,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl24,395,543 - 4,442,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx211,498,001 - 11,544,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.029,597,257 - 9,644,196 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.024,240,758 - 4,287,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0291,450,162 - 91,497,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl291,450,162 - 91,497,091 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.022,274,882 - 2,309,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.421,923,309 - 1,970,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.121,937,434 - 1,981,975 (+)NCBI
Celera2885,989 - 932,918 (+)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Pcsk1RatDehydration  IEP 2308904associated with Protein-Energy Malnutrition; protein:increased expression:pituitary (rat)RGD 
Pcsk1RatDwarfism  ISORGD:734346737721 RGD 
Pcsk1RatEndotoxemia  IEP 6483567 RGD 
Pcsk1RatExperimental Diabetes Mellitus  IEP 2308905mRNA, protein:increased expression:spleen, spleen white pulp (rat)RGD 
Pcsk1RatExperimental Diabetes Mellitus  ISORGD:7343462308931protein:increased expression:pancreatic alpha cell (mouse)RGD 
Pcsk1RatExperimental Diabetes Mellitus  ISORGD:7343462308905mRNA, protein:increased expression:spleen (mouse)RGD 
Pcsk1RatExperimental Seizures  IEP 2308918mRNA:increased expression:dentate gyrus granule cell layer (rat)RGD 
Pcsk1Ratglucose intolerance  ISORGD:7343462308929associated with Hyperinsulinemia, Aniridia; mRNA, protein:decreased expression:pancreatic islet (mouse)RGD 
Pcsk1Rathyperglycemia  IEP 2308919associated with Diabetes Mellitus, Experimental; protein, mRNA:altered expression:pancreatic islet (rat)RGD 
Pcsk1Rathyperglycemia  IDA 2308899associated with Diabetes Mellitus, Experimental; protein:increased expression:hepatocyte (rat)RGD 
Pcsk1Rathyperthyroidism  IEP 2308889mRNA:decreased expression:hypothalamus, hippocampus, cortex (rat)RGD 
Pcsk1Rathyperthyroidism  IEP 1601276protein:decreased expression:paraventricular nucleus, median eminence (rat)RGD 
Pcsk1Rathypogonadism  ISORGD:7343451357926 RGD 
Pcsk1Rathypothyroidism  IEP 2308889mRNA:increased expression:hypothalamus, hippocampus, cortex (rat)RGD 
Pcsk1Rathypothyroidism  IEP 1600414protein:increased expression:paraventricular nucleus, lateral hypothalamic nucleus (rat)RGD 
Pcsk1RatInflammation  IEP 2308900protein:increased expression:paw, leukocyte (rat)RGD 
Pcsk1RatInflammation  IEP 407580520mRNA:increased expression:lymph nodeRGD 
Pcsk1Ratislet cell tumor  IEP 2308920protein:increased expression:insulinoma (rat)RGD 
Pcsk1Ratmorbid obesity  ISORGD:7343451357926 RGD 
Pcsk1Ratobesity  ISORGD:7343451601274DNA:missense mutation:cds: p.G483R (human)RGD 
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Pcsk1Ratfamilial adenomatous polyposis 1  ISORGD:7343458554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004|PMID:18487285|PMID:19279422|PMID:19409520|PMID:20685668|PMID:21643010|PMID:28492532
Pcsk1Ratgenetic disease  ISORGD:7343458554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868|PMID:28492532
Pcsk1RatHereditary Neoplastic Syndromes  ISORGD:7343458554872ClinVar Annotator: match by term: Hereditary Cancer SyndromeClinVarPMID:18487285|PMID:19279422|PMID:21643010|PMID:28492532
Pcsk1RatHereditary Neoplastic Syndromes  ISORGD:7343458554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004|PMID:18487285|PMID:19279422|PMID:19409520|PMID:20685668|PMID:21643010|PMID:28492532
Pcsk1RatNeurodevelopmental Disorders  ISORGD:7343458554872ClinVar Annotator: match by term: Neurodevelopmental abnormalityClinVarPMID:25741868
Pcsk1Ratobesity  ISORGD:7343458554872ClinVar Annotator: match by term: Monogenic Non-Syndromic Obesity | ClinVar Annotator: match by term: Monogenic more ...ClinVarPMID:25741868|PMID:28492532
Pcsk1Ratproprotein convertase 1/3 deficiency  ISORGD:7343458554872ClinVar Annotator: match by term: OBESITY AND ENDOCRINOPATHY DUE TO IMPAIRED PROCESSING OF PROHORMONES | more ...ClinVarPMID:14617756|PMID:16199547|PMID:17595246|PMID:22210313|PMID:23383060|PMID:23562752|PMID:23800642|PMID:24041679|PMID:24135795|PMID:24280991|PMID:24932808|PMID:25272002|PMID:25741868|PMID:26207343|PMID:26786350|PMID:27187081|PMID:27391121|PMID:28377240|PMID:28492532|PMID:30383237|PMID:35574020|PMID:9207799
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Original Reference(s)
Pcsk1RatBody Weight  ISORGD:73434511554173CTD Direct Evidence: marker/mechanismCTDPMID:22344219
Pcsk1Ratobesity  ISORGD:73434511554173CTD Direct Evidence: marker/mechanismCTDPMID:18604207
Pcsk1Ratproprotein convertase 1/3 deficiency  ISORGD:73434511554173CTD Direct Evidence: marker/mechanismCTD 
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Pcsk1Ratendocrine system disease  ISSRGD:73434613592920 MouseDO 
Pcsk1Ratobesity  ISSRGD:73434613592920OMIM:601665MouseDO 
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Original Reference(s)
Pcsk1Ratproprotein convertase 1/3 deficiency  ISORGD:7343457240710 OMIM 

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Original Reference(s)
Pcsk1Rat(+)-pilocarpine increases expressionEXP 6480464Pilocarpine results in increased expression of PCSK1 mRNACTDPMID:9015327
Pcsk1Rat1,2-dichloroethane decreases expressionISORGD:7343466480464ethylene dichloride results in decreased expression of PCSK1 mRNACTDPMID:28960355
Pcsk1Rat1,2-dimethylhydrazine decreases expressionEXP 64804641,2-Dimethylhydrazine results in decreased expression of PCSK1 mRNACTDPMID:27840820
Pcsk1Rat1,2-dimethylhydrazine decreases expressionISORGD:73434664804641,2-Dimethylhydrazine results in decreased expression of PCSK1 mRNACTDPMID:22206623
Pcsk1Rat1,3-dinitrobenzene increases expressionEXP 64804643-dinitrobenzene results in increased expression of PCSK1 mRNACTDPMID:21983209
Pcsk1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of PCSK1 mRNACTDPMID:17557909
Pcsk1Rat17beta-estradiol increases expressionISORGD:7343456480464Estradiol results in increased expression of PCSK1 mRNACTDPMID:25878060
Pcsk1Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of PCSK1 mRNACTDPMID:26496021
Pcsk1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PCSK1 mRNA; Tetrachlorodibenzodioxin results in decreased expression of PCSK1 more ...CTDPMID:10919282|PMID:32109520
Pcsk1Rat3,3',5-triiodo-L-thyronine decreases expressionISORGD:7343456480464Triiodothyronine results in decreased expression of PCSK1 mRNACTDPMID:15291740
Pcsk1Rat5-aza-2'-deoxycytidine affects expressionISORGD:7343456480464Decitabine affects the expression of PCSK1 mRNACTDPMID:17145863
Pcsk1Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of PCSK1 mRNACTDPMID:24780913
Pcsk1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of PCSK1 mRNACTDPMID:30047161
Pcsk1Rat8-Br-cAMP increases expressionISORGD:73434564804648-Bromo Cyclic Adenosine Monophosphate results in increased expression of PCSK1 mRNACTDPMID:20147733|PMID:22079614
Pcsk1Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of PCSK1 mRNACTDPMID:31881176
Pcsk1Ratacetylsalicylic acid decreases expressionISORGD:7343456480464Aspirin results in decreased expression of PCSK1 mRNACTDPMID:11906190
Pcsk1Rataflatoxin B1 increases methylationISORGD:7343456480464Aflatoxin B1 results in increased methylation of PCSK1 geneCTDPMID:27153756
Pcsk1Ratalpha-Zearalanol multiple interactionsEXP 6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of PCSK1 mRNACTDPMID:35163327
Pcsk1Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of PCSK1 mRNACTDPMID:30047161
Pcsk1Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of PCSK1 mRNACTDPMID:16483693

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Biological Process
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Original Reference(s)
Pcsk1Ratinsulin processing involved_inISORGD:7343461624291MGI:2384741 PMID:12136131RGDPMID:12136131
Pcsk1Ratneurogenesis  IEP 2308890 RGD 
Pcsk1Ratpancreas development  IEP 2308896 RGD 
Pcsk1Ratpeptide biosynthetic process involved_inISORGD:7343461624291 PMID:8262946RGDPMID:8262946
Pcsk1Ratpeptide hormone processing  IDA 2308913pituitary adenylate cyclase-activating polypetideRGD 
Pcsk1Ratpeptide hormone processing involved_inIBAMGI:97511|PANTHER:PTN001647685|RGD:32721600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcsk1Ratpeptide hormone processing involved_inISORGD:7343461624291 PMID:8262946, PMID:9242664RGDPMID:8262946|PMID:9242664
Pcsk1Ratpeptide hormone processing  IMP 1601276 RGD 
Pcsk1Ratpituitary gland development  IEP 2308902 RGD 
Pcsk1Ratpositive regulation of protein secretion  IMP 734486prohormone convertase 3RGD 
Pcsk1Ratpositive regulation of protein secretion  IDA 2308916 RGD 
Pcsk1Ratprotein autoprocessing  IMP 2308914 RGD 
Pcsk1Ratprotein processing  IMP 1601276 RGD 
Pcsk1Ratprotein processing involved_inISORGD:7343461624291 PMID:9242664RGDPMID:9242664
Pcsk1Ratproteolysis involved_inIEAUniProtKB-KW:KW-06451600115GO_REF:0000043UniProtGO_REF:0000043
Pcsk1Ratproteolysis involved_inIEAInterPro:IPR000209|InterPro:IPR002884|InterPro:IPR0368521600115GO_REF:0000002InterProGO_REF:0000002
Pcsk1Ratresponse to axon injury  IEP 2308892 RGD 
Pcsk1Ratresponse to calcium ion  IEP 2308914 RGD 
Pcsk1Ratresponse to chlorate  IEP 2308896 RGD 
Pcsk1Ratresponse to fatty acid  IEP 2308890docosahexaenoic acidRGD 
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Cellular Component
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Original Reference(s)
Pcsk1Rataxon terminus  IDA 2308907 RGD 
Pcsk1Ratcytoplasm located_inIEAARBA:ARBA000269711600115GO_REF:0000117UniProtGO_REF:0000117
Pcsk1Ratcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-09681600115GO_REF:0000043UniProtGO_REF:0000043
Pcsk1Ratdendrite  IDA 2308907 RGD 
Pcsk1Ratendomembrane system located_inIEAARBA:ARBA000289531600115GO_REF:0000117UniProtGO_REF:0000117
Pcsk1Ratextracellular space  IDA 2308916 RGD 
Pcsk1Ratextracellular space located_inISORGD:7343461624291 PMID:8397508RGDPMID:8397508
Pcsk1Ratextracellular space is_active_inIBAMGI:97511|PANTHER:PTN001647685|RGD:3272|UniProtKB:P291201600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcsk1Ratextracellular space located_inISORGD:7343451624291 PMID:8397508RGDPMID:8397508
Pcsk1Ratmembrane is_active_inIBAFB:FBgn0004509|MGI:97514|PANTHER:PTN002451026|PomBase:SPAC22E12.09c|RGD:3274|UniProtKB:O05458|UniProtKB:O05461|UniProtKB:O53695|UniProtKB:P09958|UniProtKB:P16519|UniProtKB:Q16549|UniProtKB:Q8IHZ51600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcsk1Ratneuron projection is_active_inIBAPANTHER:PTN001647685|RGD:32721600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcsk1Ratneuronal cell body  IDA 2308907 RGD 
Pcsk1Ratneuronal cell body  IDA 2308893 RGD 
Pcsk1Ratperikaryon  IDA 2308893 RGD 
Pcsk1Ratperinuclear region of cytoplasm  IDA 2308916 RGD 
Pcsk1Ratsecretory granule located_inIDARGD:3273|RGD:29162308908proinsulin, pancreatic islet beta-cellsRGD 
Pcsk1Ratsecretory granule is_active_inISORGD:7343461624291 PMID:12136131RGDPMID:12136131
Pcsk1Ratsecretory granule  IDA 1625123 RGD 
Pcsk1Ratsecretory granule lumen located_inTAS 1600115Reactome:R-NUL-9023165ReactomeReactome:R-NUL-9023165
Pcsk1Rattrans-Golgi network  IDA 2308907 RGD 
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Molecular Function
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Pcsk1Ratendopeptidase activity  IMP 2308914proglucagonRGD 
Pcsk1Ratendopeptidase activity enablesISORGD:7343461624291 PMID:9242664RGDPMID:9242664
Pcsk1Ratendopeptidase activity  IDA 2308913pituitary adenylate cyclase-activating polypetideRGD 
Pcsk1Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Pcsk1Ratidentical protein binding enablesISORGD:7343461624291UniProtKB:P63239 PMID:19376969RGDPMID:19376969
Pcsk1Ratpeptidase activity enablesIEAUniProtKB-KW:KW-06451600115GO_REF:0000043UniProtGO_REF:0000043
Pcsk1Ratserine-type endopeptidase activity enablesIEAInterPro:IPR002884|InterPro:IPR0368521600115GO_REF:0000002InterProGO_REF:0000002
Pcsk1Ratserine-type endopeptidase activity enablesIEAEC:3.4.21.931600115GO_REF:0000003UniProtGO_REF:0000003
Pcsk1Ratserine-type endopeptidase activity enablesIBACGD:CAL0000186377|FB:FBgn0004509|FB:FBgn0004598|MGI:97511|MGI:97512|MGI:97513|MGI:97515|PANTHER:PTN002451026|PomBase:SPAC22E12.09c|RGD:3273|RGD:3274|SGD:S000005182|UniProtKB:G5EB75|UniProtKB:O05461|UniProtKB:P09958|UniProtKB:P16519|UniProtKB:P29122|UniProtKB:Q92824|WB:WBGene00000088|WB:WBGene00001172|WB:WBGene000022321600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcsk1Ratserine-type endopeptidase activity enablesISORGD:7343461624291MGI:2384741 PMID:12136131, PMID:8262946RGDPMID:12136131|PMID:8262946
Pcsk1Ratserine-type peptidase activity enablesIEAInterPro:IPR0002091600115GO_REF:0000002InterProGO_REF:0000002
Pcsk1Ratserine-type peptidase activity enablesIEAUniProtKB-KW:KW-07201600115GO_REF:0000043UniProtGO_REF:0000043
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RGD Manual Annotations


  
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Original Reference(s)
Pcsk1Rataltered energy homeostasis pathway  ISS 1357926 RGD 
Pcsk1Rataltered melanocortin system pathway  ISS 1357926 RGD 
Pcsk1Rataltered melanocortin system pathway  ISORGD:7343451357925 RGD 
Pcsk1Ratmelanocortin system pathway   ISS 1357926 RGD 
Pcsk1Ratmelanocortin system pathway   ISORGD:7343451357925 RGD 
Pcsk1Ratobesity pathway  ISORGD:7343451357925 RGD 
Pcsk1Ratobesity pathway  ISORGD:7343451357926 RGD 
Pcsk1Ratorexin/hypocretin signaling pathway  ISORGD:7343461642015 RGD 

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Reference Title
Reference Citation
1. Increased secretory demand rather than a defect in the proinsulin conversion mechanism causes hyperproinsulinemia in a glucose-infusion rat model of non-insulin-dependent diabetes mellitus. Alarcon C, etal., J Clin Invest. 1995 Mar;95(3):1032-9.
2. Colocalization of chaperone Cpn60, proinsulin and convertase PC1 within immature secretory granules of insulin-secreting cells suggests a role for Cpn60 in insulin processing. Arias AE, etal., J Cell Sci. 2000 Jun;113 ( Pt 11):2075-83.
3. Regulation of the biosynthesis and processing of chromogranins in organotypic slices: influence of depolarization, forskolin and differentiating factors. Bauer R, etal., Eur J Neurosci. 2000 Aug;12(8):2746-56.
4. Immunohistochemical expression and colocalization of somatostatin, carboxypeptidase-E and prohormone convertases 1 and 2 in rat brain. Billova S, etal., Neuroscience. 2007 Jun 29;147(2):403-18. Epub 2007 Jun 1.
5. Prohormone-converting enzymes: regulation and evaluation of function using antisense RNA. Bloomquist BT, etal., Mol Endocrinol 1991 Dec;5(12):2014-24.
6. Altered proinsulin conversion in rat pancreatic islets exposed long-term to various glucose concentrations or interleukin-1beta. Borjesson A and Carlsson C, J Endocrinol. 2007 Feb;192(2):381-7.
7. Distribution and colocalization of cholecystokinin with the prohormone convertase enzymes PC1, PC2, and PC5 in rat brain. Cain BM, etal., J Comp Neurol 2003 Dec 15;467(3):307-25.
8. Dietary sodium modulates mRNA abundance of enzymes involved in pituitary processing of proopiomelanocortin. Chandramohan G, etal., Pituitary. 2001 Sep;4(4):231-7.
9. Docosahexaenoic acid significantly stimulates immediate early response genes and neurite outgrowth. Dagai L, etal., Neurochem Res. 2009 May;34(5):867-75. Epub 2008 Sep 10.
10. Intraorganellar calcium and pH control proinsulin cleavage in the pancreatic beta cell via two distinct site-specific endopeptidases. Davidson HW, etal., Nature. 1988 May 5;333(6168):93-6. doi: 10.1038/333093a0.
11. Gene expression of proprotein convertases in individual rat anterior pituitary cells and their regulation in corticotrophs mediated by glucocorticoids. Dong W and Day R, Endocrinology 2002 Jan;143(1):254-62.
12. Cellular colocalization and coregulation between hypothalamic pro-TRH and prohormone convertases in hypothyroidism. Espinosa VP, etal., Am J Physiol Endocrinol Metab. 2007 Jan;292(1):E175-86. Epub 2006 Aug 22.
13. Differential regulation of prohormone convertase 1/3, prohormone convertase 2 and phosphorylated cyclic-AMP-response element binding protein by short-term and long-term morphine treatment: implications for understanding the "switch" to opiate addiction. Espinosa VP, etal., Neuroscience. 2008 Oct 15;156(3):788-99. Epub 2008 Aug 9.
14. Adult rat liver cells transdifferentiated with lentiviral IPF1 vectors reverse diabetes in mice: an ex vivo gene therapy approach. Fodor A, etal., Diabetologia. 2007 Jan;50(1):121-30. Epub 2006 Nov 28.
15. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
16. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
17. Proinsulin processing in the diabetic Goto-Kakizaki rat. Guest PC, etal., J Endocrinol. 2002 Dec;175(3):637-47.
18. Gene expression alterations of neurotrophins, their receptors and prohormone convertases in a rat model of spinal cord contusion. Hajebrahimi Z, etal., Neurosci Lett. 2008 Aug 29;441(3):261-6. Epub 2008 Jun 21.
19. Isolation of two complementary deoxyribonucleic acid clones from a rat insulinoma cell line based on similarities to Kex2 and furin sequences and the specific localization of each transcript to endocrine and neuroendocrine tissues in rats. Hakes DJ, etal., Endocrinology 1991 Dec;129(6):3053-63.
20. Obesity and impaired prohormone processing associated with mutations in the human prohormone convertase 1 gene. Jackson RS, etal., Nat Genet. 1997 Jul;16(3):303-6.
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PMID:8262946   PMID:8397508   PMID:9242664   PMID:15146101   PMID:15286802   PMID:16204236   PMID:16221685   PMID:16274843   PMID:16384863   PMID:16476726   PMID:17240044   PMID:17531155  
PMID:17556096   PMID:18784614   PMID:19376969   PMID:19628676   PMID:23050949   PMID:23637853   PMID:26778167  



Pcsk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr826,130,045 - 6,176,974 (+)NCBIGRCr8
mRatBN7.224,395,543 - 4,442,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl24,395,543 - 4,442,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx211,498,001 - 11,544,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.029,597,257 - 9,644,196 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.024,240,758 - 4,287,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0291,450,162 - 91,497,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl291,450,162 - 91,497,091 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.022,274,882 - 2,309,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.421,923,309 - 1,970,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.121,937,434 - 1,981,975 (+)NCBI
Celera2885,989 - 932,918 (+)NCBICelera
Cytogenetic Map2q11NCBI
PCSK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38596,390,333 - 96,433,248 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl596,390,333 - 96,434,143 (-)EnsemblGRCh38hg38GRCh38
GRCh37595,726,037 - 95,768,952 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36595,751,875 - 95,794,708 (-)NCBINCBI36Build 36hg18NCBI36
Build 34595,751,874 - 95,794,708NCBI
Celera591,608,060 - 91,651,008 (-)NCBICelera
Cytogenetic Map5q15NCBI
HuRef590,916,038 - 90,958,959 (-)NCBIHuRef
CHM1_1595,158,671 - 95,201,600 (-)NCBICHM1_1
T2T-CHM13v2.0596,891,318 - 96,934,221 (-)NCBIT2T-CHM13v2.0
Pcsk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391375,237,407 - 75,282,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1375,237,945 - 75,282,980 (+)EnsemblGRCm39 Ensembl
GRCm381375,089,420 - 75,134,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1375,089,826 - 75,134,861 (+)EnsemblGRCm38mm10GRCm38
MGSCv371375,227,435 - 75,269,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361375,555,989 - 75,598,500 (+)NCBIMGSCv36mm8
Celera1377,413,324 - 77,455,835 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.63NCBI
Pcsk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,181,771 - 16,224,603 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541816,181,809 - 16,224,274 (+)NCBIChiLan1.0ChiLan1.0
PCSK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2418,947,427 - 18,989,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1517,101,051 - 17,143,521 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0518,917,488 - 18,960,102 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1519,064,004 - 19,106,486 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl519,064,004 - 19,106,486 (+)Ensemblpanpan1.1panPan2
PCSK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1313,233,342 - 13,276,921 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl313,233,594 - 13,274,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha314,573,263 - 14,616,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0313,112,863 - 13,155,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl313,112,897 - 13,155,993 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1313,076,913 - 13,120,227 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0313,073,463 - 13,116,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0313,272,840 - 13,316,211 (+)NCBIUU_Cfam_GSD_1.0
Pcsk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213168,824,505 - 168,864,179 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365237,010,068 - 7,050,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365237,009,966 - 7,050,300 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCSK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2103,004,794 - 103,050,839 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12103,004,794 - 103,050,707 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap2qNCBI
PCSK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1490,246,413 - 90,289,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl490,248,598 - 90,289,089 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604938,898,564 - 38,941,574 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcsk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474314,994,172 - 15,036,412 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474314,993,436 - 15,036,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pcsk1
43 total Variants

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:160
Interacting mature miRNAs:184
Transcripts:ENSRNOT00000015185
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat

M58589  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.224,439,925 - 4,440,044 (-)MAPPERmRatBN7.2
Rnor_6.0291,452,552 - 91,452,670NCBIRnor6.0
Rnor_5.022,307,378 - 2,307,496UniSTSRnor5.0
Rnor_5.02111,213,493 - 111,213,611UniSTSRnor5.0
RGSC_v3.421,967,730 - 1,967,848UniSTSRGSC3.4
Celera2930,410 - 930,528UniSTS
Cytogenetic Map2q11-q12UniSTS
AU049217  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.224,431,894 - 4,432,100 (-)MAPPERmRatBN7.2
Rnor_6.0291,460,496 - 91,460,701NCBIRnor6.0
Rnor_5.022,299,347 - 2,299,552UniSTSRnor5.0
Rnor_5.02111,221,437 - 111,221,642UniSTSRnor5.0
RGSC_v3.421,959,699 - 1,959,904UniSTSRGSC3.4
Celera2922,379 - 922,584UniSTS
Cytogenetic Map2q11-q12UniSTS
BE119208  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.224,439,827 - 4,439,977 (-)MAPPERmRatBN7.2
Rnor_6.0291,452,619 - 91,452,768NCBIRnor6.0
Rnor_5.022,307,280 - 2,307,429UniSTSRnor5.0
Rnor_5.02111,213,560 - 111,213,709UniSTSRnor5.0
RGSC_v3.421,967,632 - 1,967,781UniSTSRGSC3.4
Celera2930,312 - 930,461UniSTS
Cytogenetic Map2q11-q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 3 7 111 61 60 32 22 32 6 102 51 91 10 29 28



Ensembl Acc Id: ENSRNOT00000015185   ⟹   ENSRNOP00000015185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl24,395,543 - 4,442,434 (+)Ensembl
Rnor_6.0 Ensembl291,450,162 - 91,497,091 (-)Ensembl
RefSeq Acc Id: NM_017091   ⟹   NP_058787
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr826,130,045 - 6,176,974 (+)NCBI
mRatBN7.224,395,543 - 4,442,434 (+)NCBI
Rnor_6.0291,450,162 - 91,497,091 (-)NCBI
Rnor_5.022,274,882 - 2,309,886 (+)NCBI
RGSC_v3.421,923,309 - 1,970,238 (+)RGD
Celera2885,989 - 932,918 (+)RGD
Sequence:
Protein RefSeqs NP_058787 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40945 (Get FASTA)   NCBI Sequence Viewer  
  AAA41476 (Get FASTA)   NCBI Sequence Viewer  
  EDM09905 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015185
  ENSRNOP00000015185.2
GenBank Protein P28840 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058787   ⟸   NM_017091
- Peptide Label: precursor
- UniProtKB: P28840 (UniProtKB/Swiss-Prot),   A6I4E7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015185   ⟸   ENSRNOT00000015185
P/Homo B   Peptidase S8

Name Modeler Protein Id AA Range Protein Structure
AF-P28840-F1-model_v2 AlphaFold P28840 1-752 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13691229
Promoter ID:EPDNEW_R1752
Type:single initiation site
Name:Pcsk1_1
Description:proprotein convertase subtilisin/kexin type 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0291,497,093 - 91,497,153EPDNEW


1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-55111 BioCyc
Ensembl Genes ENSRNOG00000011107 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015185 ENTREZGENE
  ENSRNOT00000015185.4 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.850 UniProtKB/Swiss-Prot
  3.40.50.200 UniProtKB/Swiss-Prot
  6.10.250.3320 UniProtKB/Swiss-Prot
  Galactose-binding domain-like UniProtKB/Swiss-Prot
InterPro Galactose-bd-like_sf UniProtKB/Swiss-Prot
  Kexin/furin UniProtKB/Swiss-Prot
  P_dom UniProtKB/Swiss-Prot
  Peptidase_S8/S53_dom UniProtKB/Swiss-Prot
  Peptidase_S8/S53_dom_sf UniProtKB/Swiss-Prot
  Peptidase_S8_Asp-AS UniProtKB/Swiss-Prot
  Peptidase_S8_His-AS UniProtKB/Swiss-Prot
  Peptidase_S8_Ser-AS UniProtKB/Swiss-Prot
  Peptidase_S8_subtilisin-rel UniProtKB/Swiss-Prot
  Proho_convert UniProtKB/Swiss-Prot
  S8_pro-domain UniProtKB/Swiss-Prot
  S8_pro-domain_sf UniProtKB/Swiss-Prot
KEGG Report rno:25204 UniProtKB/Swiss-Prot
NCBI Gene 25204 ENTREZGENE
PANTHER NEUROENDOCRINE CONVERTASE 1 UniProtKB/Swiss-Prot
  PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED UniProtKB/Swiss-Prot
Pfam P_proprotein UniProtKB/Swiss-Prot
  Peptidase_S8 UniProtKB/Swiss-Prot
  Proho_convert UniProtKB/Swiss-Prot
  S8_pro-domain UniProtKB/Swiss-Prot
PhenoGen Pcsk1 PhenoGen
PRINTS SUBTILISIN UniProtKB/Swiss-Prot
PROSITE P_HOMO_B UniProtKB/Swiss-Prot
  SUBTILASE UniProtKB/Swiss-Prot
  SUBTILASE_ASP UniProtKB/Swiss-Prot
  SUBTILASE_HIS UniProtKB/Swiss-Prot
  SUBTILASE_SER UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011107 RatGTEx
Superfamily-SCOP Protease propeptides/inhibitors UniProtKB/Swiss-Prot
  SSF49785 UniProtKB/Swiss-Prot
  SSF52743 UniProtKB/Swiss-Prot
UniProt A6I4E7 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Pcsk1  Protein convertase subtilisin / kexin, type I      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_expression expressed in endocrine and neuroendocrine tissues 70278
gene_process has a role in the maturation of mammalian hormones 70278
gene_process may function in secretory pathway 70278
gene_product 752 aa protein 70278