Ubb (ubiquitin B) - Rat Genome Database

Name: Ubb
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ubb (ubiquitin B) Rattus norvegicus

Analyze

Symbol:

Ubb

Name:

ubiquitin B

RGD ID:

621562

Description:

Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process; positive regulation of protein monoubiquitination; and protein ubiquitination. Predicted to act upstream of or within several processes, including gonad development; meiosis I; and neuron development. Predicted to be located in mitochondrion; neuron projection; and neuronal cell body. Predicted to be extrinsic component of mitochondrial outer membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBB (ubiquitin B); PARTICIPATES IN Parkinson's disease pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Loc192255; polyubiquitin; polyubiquitin-B; UBC; ubiquitin; ubiquitin C

RGD Orthologs

Human

Mouse

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBB (ubiquitin B)	RGD	RGD
Mus musculus (house mouse):	Ubb (ubiquitin B)	RGD	RGD
Pan paniscus (bonobo/pygmy chimpanzee):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ubb (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ubb (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	UBB (ubiquitin B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA)
Mus musculus (house mouse):	Ubb (ubiquitin B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-202a12.4	Alliance	DIOPT (Ensembl Compara\|OMA)
Drosophila melanogaster (fruit fly):	CG11700	Alliance	DIOPT (Ensembl Compara\|OMA)
Saccharomyces cerevisiae (baker's yeast):	UBI4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA)

Related Pseudogenes:

Ubb-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	47,247,629 - 47,249,335 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	47,245,637 - 47,249,333 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	51,951,219 - 51,952,925 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	51,441,764 - 51,443,470 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	46,945,175 - 46,946,881 (+)	NCBI	Rnor_WKY
Rnor_6.0	10	48,880,231 - 48,881,896 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	48,881,049 - 48,881,881 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	48,664,227 - 48,665,056 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	10	48,752,613 - 48,753,069	NCBI
Celera	10	46,494,897 - 46,496,578 (+)	NCBI		Celera
Cytogenetic Map	10	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3'-diindolylmethane (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroperoxycyclophosphamide (ISO)

acrylamide (ISO)

ammonium chloride (EXP)

antimycin A (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

astaxanthin (ISO)

Azaspiracid (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

caffeine (ISO)

calcium atom (EXP)

calcium(0) (EXP)

cannabidiol (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cypermethrin (EXP)

cyproconazole (ISO)

dinophysistoxin 1 (ISO)

doxorubicin (ISO)

enzalutamide (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fipronil (EXP)

flavonoids (EXP)

folic acid (ISO)

gallic acid (ISO)

gentamycin (EXP)

glyphosate (EXP)

imidacloprid (EXP)

inulin (ISO)

isoprenaline (ISO)

Licochalcone B (ISO)

maneb (ISO)

manganese(II) chloride (EXP)

melatonin (ISO)

menadione (ISO)

methylisothiazolinone (ISO)

nickel atom (ISO)

nicotine (ISO)

ochratoxin A (ISO)

ozone (EXP)

paracetamol (EXP,ISO)

paraquat (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phlorizin (ISO)

propiconazole (ISO)

pyrimidifen (ISO)

pyrogallol (ISO)

quercetin (EXP)

raloxifene (EXP)

resveratrol (EXP)

rotenone (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

tebufenpyrad (ISO)

thiabendazole (EXP)

thifluzamide (ISO)

toluene (EXP)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adipose tissue development (ISO)

energy homeostasis (ISO)

fat pad development (ISO)

female gonad development (ISO)

female meiosis I (ISO)

hypothalamus gonadotrophin-releasing hormone neuron development (ISO)

male gonad development (ISO)

male meiosis I (ISO)

mitochondrion transport along microtubule (ISO)

modification-dependent protein catabolic process (IBA)

neuron projection morphogenesis (ISO)

positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

positive regulation of protein monoubiquitination (ISO)

positive regulation of protein ubiquitination (ISO)

protein ubiquitination (IBA)

regulation of mitochondrial membrane potential (ISO)

regulation of neuron apoptotic process (ISO)

regulation of proteasomal protein catabolic process (ISO)

seminiferous tubule development (ISO)

Cellular Component

extrinsic component of mitochondrial outer membrane (ISO)

mitochondrion (ISO)

neuron projection (ISO)

neuronal cell body (ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

protein tag (IBA)

ubiquitin protein ligase binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

Parkinson's disease pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Nucleotide sequence and expression of the rat polyubiquitin mRNA.	Hayashi T, etal., Biochim Biophys Acta 1994 Jun 21;1218(2):232-4.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Gene expressions of ubiquitin and hsp70 following focal ischaemia in rat brain.	Noga M, etal., Neuroreport 1997 Mar 24;8(5):1239-41.
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8031840	PMID:9074707	PMID:14604964	PMID:15489334	PMID:15632090	PMID:16502470	PMID:17571083	PMID:17634366	PMID:17971410	PMID:18070917	PMID:18299572	PMID:19190083
PMID:19844237	PMID:20737472	PMID:21630459	PMID:23106098	PMID:23376485	PMID:23533145	PMID:24660806	PMID:29476059

Genomics

Comparative Map Data

Ubb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	47,247,629 - 47,249,335 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	47,245,637 - 47,249,333 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	51,951,219 - 51,952,925 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	51,441,764 - 51,443,470 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	46,945,175 - 46,946,881 (+)	NCBI	Rnor_WKY
Rnor_6.0	10	48,880,231 - 48,881,896 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	48,881,049 - 48,881,881 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	48,664,227 - 48,665,056 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	10	48,752,613 - 48,753,069	NCBI
Celera	10	46,494,897 - 46,496,578 (+)	NCBI		Celera
Cytogenetic Map	10	q23	NCBI

UBB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	16,380,779 - 16,382,745 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	17	16,380,798 - 16,382,745 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	16,284,093 - 16,286,059 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	16,225,092 - 16,226,779 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	16,225,091 - 16,226,779	NCBI
Celera	17	16,187,292 - 16,188,979 (+)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	16,150,949 - 16,152,636 (+)	NCBI		HuRef
CHM1_1	17	16,294,106 - 16,295,793 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	16,283,097 - 16,285,063 (+)	NCBI		T2T-CHM13v2.0

Ubb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	62,442,329 - 62,444,037 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	62,441,997 - 62,444,039 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	62,551,171 - 62,553,213 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	62,551,171 - 62,553,213 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	62,365,006 - 62,366,714 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	62,367,697 - 62,369,407 (+)	NCBI		MGSCv36	mm8
Celera	11	69,470,925 - 69,472,633 (+)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	38.46	NCBI

UBB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	17	61,063,907 - 61,065,938 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	35,286,699 - 35,288,429 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	110,578,715 - 110,580,217 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

UBB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	39,533,365 - 39,535,120 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	39,511,426 - 39,535,815 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	39,679,659 - 39,681,890 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	39,643,511 - 39,645,744 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	39,640,787 - 39,645,440 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	39,615,228 - 39,617,465 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	39,560,488 - 39,562,718 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	39,752,689 - 39,754,922 (-)	NCBI		UU_Cfam_GSD_1.0

Ubb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	59,569,737 - 59,571,169 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936821	241,981 - 243,304 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	59,171,289 - 59,172,841 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	59,171,258 - 59,172,841 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	62,297,981 - 62,299,561 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	15,279,271 - 15,289,111 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	5,683,854 - 5,685,836 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ubb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624877	4,050,188 - 4,051,768 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624877	4,050,188 - 4,051,849 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ubb
13 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	146
Count of miRNA genes:	115
Interacting mature miRNAs:	120
Transcripts:	ENSRNOT00000066885
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	28875650	52200160	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35392267	51793994	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High	3	35	29	29	3	29		3	66	27	35	3
Medium		8	28	12	16	12	8	8	8	8	6	8	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001409092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_138895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC060312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D16554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM053084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM072119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN803398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000066885

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	48,881,049 - 48,881,881 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117146 ⟹ ENSRNOP00000086005

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	47,245,637 - 47,249,333 (+)	Ensembl

RefSeq Acc Id:

NM_138895 ⟹ NP_620250

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	47,247,629 - 47,249,335 (+)	NCBI
Rnor_6.0	10	48,880,231 - 48,881,896 (+)	NCBI
Rnor_5.0	10	48,664,227 - 48,665,056 (+)	NCBI
RGSC_v3.4	10	139,578,694 - 139,579,068 (+)	RGD
Celera	10	46,494,897 - 46,496,578 (+)	NCBI

Sequence:

show sequence

TCAGTGACGAGAGGCTTTGTCCGGTTCCGAGGTCTTTCTGTGAGGGTGTTTCGACGCGCTGGGC
GGTTTGTTCCTTCATCGCATTCGTTAACAGGTCAAAATGCAAATCTTCGTGAAGACCCTGACCG
GCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCA
GGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGAT
GGCCGCACCCTCTCTGACTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGCCTGA
GGGGCGGCATGCAGATCTTCGTGAAGACCCTGACCGTCAAGACCATCACCCTGGAGGTGGAGCC
CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG
CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCC
AGAAAGAGTCAACCCTGCACCTTGTCCTCCGCCTGAGGGGCGGCATGCAGATCTTCGTGAAGAC
CCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCC
AAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGC
TGGAAGATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAGTCAACCCTGCACCTGGTCCT
CCGCCTGAGGGGCGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAG
GTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCC
CTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTA
CAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGCTATTAATTCTTC
AGTCTGCATTCCCGGCGGGCACTGATGGCATTACTCTGCACTCTAGCCATTTGCCCCAATTTAA
GTTTAGAAATTACAAGTTTCAGTAATAGCTGAACCTCTGTTAAAAATGTTAATAAAGGTTTTGT
TGCATGGTAAGCATAAAAAAAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001396021	(Get FASTA)	NCBI Sequence Viewer
	NP_620250	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH60312	(Get FASTA)	NCBI Sequence Viewer
	AAH70919	(Get FASTA)	NCBI Sequence Viewer
	BAA03983	(Get FASTA)	NCBI Sequence Viewer
	EDM04713	(Get FASTA)	NCBI Sequence Viewer
	EDM04714	(Get FASTA)	NCBI Sequence Viewer
	P0CG51	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_620250 ⟸ NM_138895

- Peptide Label:

precursor

- Sequence:

show sequence

MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTVKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY

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RefSeq Acc Id:

ENSRNOP00000086005 ⟸ ENSRNOT00000117146

Protein Domains

Ubiquitin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0CG51-F1-model_v2	AlphaFold	P0CG51	1-305	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621562	AgrOrtholog
BioCyc Gene	G2FUF-24772	BioCyc
Ensembl Genes	ENSRNOG00000042271	Ensembl
	ENSRNOG00000066088	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000086005.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000117146.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6919609	IMAGE-MGC_LOAD
	IMAGE:7104905	IMAGE-MGC_LOAD
	IMAGE:7126996	IMAGE-MGC_LOAD
InterPro	Ubiquitin	UniProtKB/Swiss-Prot
	Ubiquitin-like_dom	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin_dom	UniProtKB/Swiss-Prot
	Ubiquitin_dom	UniProtKB/TrEMBL
KEGG Report	rno:192255	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72686	IMAGE-MGC_LOAD
	MGC:91487	IMAGE-MGC_LOAD
	MGC:93171	IMAGE-MGC_LOAD
NCBI Gene	192255	ENTREZGENE
PANTHER	POLYUBIQUITIN-B	UniProtKB/Swiss-Prot
	UBIQUITIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UBIQUITIN-40S RIBOSOMAL PROTEIN S27A	UniProtKB/TrEMBL
Pfam	ubiquitin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ubb	PhenoGen
PRINTS	UBIQUITIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	UBIQUITIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UBIQUITIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	UBQ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A4W7_RAT	UniProtKB/TrEMBL
	P0CG51	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	P02248	UniProtKB/Swiss-Prot
	P02249	UniProtKB/Swiss-Prot
	P02250	UniProtKB/Swiss-Prot
	P62989	UniProtKB/Swiss-Prot
	Q29120	UniProtKB/Swiss-Prot
	Q63446	UniProtKB/Swiss-Prot
	Q91887	UniProtKB/Swiss-Prot
	Q91888	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-25	Ubb	ubiquitin B	Ubb	polyubiquitin	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Ubb	polyubiquitin	Loc192255		Symbol and Name updated	1299863	APPROVED
2002-08-07	Loc192255	polyubiquitin			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	mRNA highly induced following ischaemia in the central zone of the middle cerebral artery (MCA)	724407

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)