response to DNA damage stimulus - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS

Term:	response to DNA damage stimulus	go back to main search page
Accession:	GO:0006974	browse the term
Definition:	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
Synonyms:	exact_synonym:	DNA damage response; cellular DNA damage response; cellular response to DNA damage stimulus; response to genotoxic stress
	alt_id:	GO:0034984

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response to DNA damage stimulus
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Aatf	apoptosis antagonizing transcription factor			ISO	10	72,701,724	72,794,495	RGD:1624291	RGD
G	Aatf	apoptosis antagonizing transcription factor			IEA	10	72,701,724	72,794,495	RGD:1600115	ENSEMBL
G	Abl1	c-abl oncogene 1, non-receptor tyrosine kinase			ISO	3	10,804,594	10,907,162	RGD:1624291	RGD
G	Alkbh8	alkB, alkylation repair homolog 8 (E. coli)			IEA	7	306,104	378,289	RGD:1600115	ENSEMBL
G	Alkbh8	alkB, alkylation repair homolog 8 (E. coli)			ISO	7	306,104	378,289	RGD:1624291	RGD
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)			ISO	1	163,282,918	163,299,333	RGD:1624291	RGD
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)			ISO	1	163,282,918	163,299,333	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli			ISO	18	26,732,147	26,790,383	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli			IEA	18	26,732,147	26,790,383	RGD:1600115	InterPro
G	Apc	adenomatous polyposis coli			ISS	18	26,732,147	26,790,383	RGD:1600115	UniProtKB
G	Aplf	aprataxin and PNKP like factor			ISO	4	121,796,926	121,849,410	RGD:1624291	RGD
G	Aptx	aprataxin			ISO	5	58,060,210	58,081,165	RGD:1624291	RGD
G	Ash2l	ash2 (absent, small, or homeotic)-like (Drosophila)			IEA	16	70,617,717	70,639,166	RGD:1600115	ENSEMBL
G	Ash2l	ash2 (absent, small, or homeotic)-like (Drosophila)			ISO	16	70,617,717	70,639,166	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated			IDA	8	56,894,746	56,996,565	RGD:1599370	RGD
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atr	ataxia telangiectasia and Rad3 related			ISO	8	100,936,342	101,014,881	RGD:1624291	RGD
G	Batf	basic leucine zipper transcription factor, ATF-like			ISS	6	109,793,076	109,817,614	RGD:1600115	UniProtKB
G	Batf	basic leucine zipper transcription factor, ATF-like			ISO	6	109,793,076	109,817,614	RGD:1624291	RGD
G	Bax	Bcl2-associated X protein			ISO	1	95,933,023	95,938,176	RGD:1624291	RGD
G	Bax	Bcl2-associated X protein			ISO	1	95,933,023	95,938,176	RGD:1624291	RGD
G	Bax	Bcl2-associated X protein			IEA	1	95,933,023	95,938,176	RGD:1600115	ENSEMBL
G	Baz1b	bromodomain adjacent to zinc finger domain, 1B			ISO	12	22,586,411	22,644,378	RGD:1624291	RGD
G	Bcl2	B-cell CLL/lymphoma 2			ISO	13	12,730,736	12,905,108	RGD:1624291	RGD
G	Bcl2	B-cell CLL/lymphoma 2			IEA	13	12,730,736	12,905,108	RGD:1600115	ENSEMBL
G	Bcl3	B-cell CLL/lymphoma 3			ISO	1	79,122,801	79,137,035	RGD:1624291	RGD
G	Bcl6	B-cell CLL/lymphoma 6			ISO	11	79,006,123	79,030,555	RGD:1624291	RGD
G	Bcl6	B-cell CLL/lymphoma 6			IEA	11	79,006,123	79,030,555	RGD:1600115	ENSEMBL
G	Blm	Bloom syndrome, RecQ helicase-like			ISO	1	136,271,573	136,358,077	RGD:1624291	RGD
G	Bmyc	brain expressed myelocytomatosis oncogene			IEA	3	3,864,740	3,865,499	RGD:1600115	ENSEMBL
G	Brca2	breast cancer 2, early onset			ISO	12	4,282,952	4,323,693	RGD:1624291	RGD
G	Bre	brain and reproductive organ-expressed (TNFRSF1A modulator)			ISO	6	24,406,837	24,791,918	RGD:1624291	RGD
G	Bre	brain and reproductive organ-expressed (TNFRSF1A modulator)			ISS	6	24,406,837	24,791,918	RGD:1600115	UniProtKB
G	Brsk1	BR serine/threonine kinase 1			ISO	1	67,851,020	67,876,360	RGD:1624291	RGD
G	Brsk2	BR serine/threonine kinase 2			ISS	1	202,083,095	202,133,268		UniProtKB
G	Btg2	BTG family, member 2			ISO	13	47,026,986	47,030,745	RGD:1624291	RGD
G	Btg2	BTG family, member 2			IEA	13	47,026,986	47,030,745	RGD:1600115	ENSEMBL
G	Casp3	caspase 3			ISO	16	48,944,226	48,962,420	RGD:1624291	RGD
G	Casp9	caspase 9, apoptosis-related cysteine peptidase			ISO	5	160,704,234	160,721,796	RGD:1624291	RGD
G	Casp9	caspase 9, apoptosis-related cysteine peptidase			ISO	5	160,704,234	160,721,796	RGD:1624291	RGD
G	Ccnd1	cyclin D1			ISO	1	205,357,235	205,366,757	RGD:1624291	RGD
G	Ccnd1	cyclin D1			ISS	1	205,357,235	205,366,757	RGD:1600115	UniProtKB
G	Ccnk	cyclin K			ISO	6	132,547,058	132,569,679	RGD:1624291	RGD
G	Ccnk	cyclin K			IEA	6	132,547,058	132,569,679	RGD:1600115	ENSEMBL
G	Cdkn1a	cyclin-dependent kinase inhibitor 1A			ISO	20	7,376,325	7,386,778	RGD:1624291	RGD
G	Cdkn1a	cyclin-dependent kinase inhibitor 1A			ISO	20	7,376,325	7,386,778	RGD:1624291	RGD
G	Chchd6	coiled-coil-helix-coiled-coil-helix domain containing 6			ISS	4	123,458,141	123,681,700	RGD:1600115	UniProtKB
G	Chchd6	coiled-coil-helix-coiled-coil-helix domain containing 6			ISO	4	123,458,141	123,681,700	RGD:1624291	RGD
G	Chd1l	chromodomain helicase DNA binding protein 1-like			ISO	2	192,382,644	192,438,157	RGD:1624291	RGD
G	Chd2	chromodomain helicase DNA binding protein 2			ISO	1	128,609,727	128,720,325	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISS	8	37,954,322	37,974,748	RGD:1600115	UniProtKB
G	Chek2	checkpoint kinase 2			ISO	12	45,933,900	45,965,427	RGD:1624291	RGD
G	Cib1	calcium and integrin binding 1 (calmyrin)			ISO	1	136,031,865	136,045,153	RGD:1624291	RGD
G	Cib1	calcium and integrin binding 1 (calmyrin)			ISS	1	136,031,865	136,045,153	RGD:1600115	HGNC
G	Clock	clock circadian regulator			IEA	14	34,218,472	34,258,054	RGD:1600115	UniProtKB
G	Ctc1	CTS telomere maintenance complex component 1			ISO	10	55,768,182	55,788,836	RGD:1624291	RGD
G	Ctla4	cytotoxic T-lymphocyte-associated protein 4			ISO	9	59,495,773	59,501,300	RGD:1624291	RGD
G	Ctla4	cytotoxic T-lymphocyte-associated protein 4			IEA	9	59,495,773	59,501,300	RGD:1600115	ENSEMBL
G	Dtl	denticleless E3 ubiquitin protein ligase homolog (Drosophila)			ISO	13	107,603,353	107,640,812	RGD:1624291	RGD
G	Dtx3l	deltex 3-like (Drosophila)			IEA	11	66,649,508	66,659,119	RGD:1600115	ENSEMBL
G	Dtx3l	deltex 3-like (Drosophila)			ISO	11	66,649,508	66,659,119	RGD:1624291	RGD
G	Dyrk2	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2			ISO	7	58,114,127	58,126,547	RGD:1624291	RGD
G	Egln3	EGL nine homolog 3 (C. elegans)			IEA	6	74,451,038	74,476,506	RGD:1600115	UniProtKB
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			ISO	16	8,024,881	8,091,587	RGD:1624291	RGD
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			ISO	16	8,024,881	8,091,587	RGD:1624291	RGD
G	Fancd2	Fanconi anemia, complementation group D2			ISO	4	149,424,558	149,500,006	RGD:1624291	RGD
G	Fancg	Fanconi anemia, complementation group G			ISO	5	59,494,640	59,501,785	RGD:1624291	RGD
G	Fancg	Fanconi anemia, complementation group G			ISO	5	59,494,640	59,501,785	RGD:1624291	RGD
G	Fancl	Fanconi anemia, complementation group L			ISO	14	107,211,448	107,276,828	RGD:1624291	RGD
G	Fbxo31	F-box protein 31			ISS	19	51,836,918	51,837,223	RGD:1600115	UniProtKB
G	Fbxo31	F-box protein 31			ISO	19	51,836,918	51,837,223	RGD:1624291	RGD
G	Fbxw7	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase			ISO	2	176,675,226	176,750,737	RGD:1624291	RGD
G	Foxo1	forkhead box O1			IBA	2	141,127,345	141,203,446	RGD:1600115	RefGenome
G	Foxo1	forkhead box O1			ISS	2	141,127,345	141,203,446	RGD:1600115	UniProtKB
G	Foxo1	forkhead box O1			ISO	2	141,127,345	141,203,446	RGD:1624291	RGD
G	Foxo3	forkhead box O3			IBA	20	46,171,784	46,262,818	RGD:1600115	RefGenome
G	Foxo6	forkhead box O6			IBA	5	140,846,863	140,866,841	RGD:1600115	RefGenome
G	Gadd45a	growth arrest and DNA-damage-inducible, alpha			TAS	4	96,649,941	96,652,243	RGD:728684	RGD
G	Gnl1	guanine nucleotide binding protein-like 1			ISO	20	2,931,792	2,940,778	RGD:1624291	RGD
G	Gnl1	guanine nucleotide binding protein-like 1			IEA	20	2,931,792	2,940,778	RGD:1600115	ENSEMBL
G	H2afx	H2A histone family, member X			ISO	8	47,312,609	47,313,938	RGD:1624291	RGD
G	Herc2	HECT and RLD domain containing E3 ubiquitin protein ligase 2			ISO	1	107,440,126	107,645,117	RGD:1624291	RGD
G	Hus1	HUS1 checkpoint homolog (S. pombe)			ISO	14	89,527,997	89,542,730	RGD:1624291	RGD
G	Ikbkg	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma			ISO	X	160,386,558	160,420,190	RGD:1624291	RGD
G	Ikbkg	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma			IEA	X	160,386,558	160,420,190	RGD:1600115	ENSEMBL
G	Inip	INTS3 and NABP interacting protein			ISO	5	77,890,067	77,901,083	RGD:1624291	RGD
G	Ints3	integrator complex subunit 3			ISO	2	182,650,164	182,702,440	RGD:1624291	RGD
G	Kin	antigenic determinant of rec-A protein homolog (mouse)			ISO	17	79,728,511	79,738,856	RGD:1624291	RGD
G	Kin	antigenic determinant of rec-A protein homolog (mouse)			IEA	17	79,728,511	79,738,856	RGD:1600115	ENSEMBL
G	Kin	antigenic determinant of rec-A protein homolog (mouse)			IEA	17	79,728,511	79,738,856	RGD:1600115	ENSEMBL
G	Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog			ISO	5	16,933,111	17,054,564	RGD:1624291	RGD
G	Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog			ISO	5	16,933,111	17,054,564	RGD:1624291	RGD
G	Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog			IEA	5	16,933,111	17,054,564	RGD:1600115	ENSEMBL
G	Macrod1	MACRO domain containing 1			ISO	1	209,730,907	209,871,392	RGD:1624291	RGD
G	Macrod1	MACRO domain containing 1			ISS	1	209,730,907	209,871,392	RGD:1600115	UniProtKB
G	Macrod2	MACRO domain containing 2			ISO	3	128,570,984	130,673,729	RGD:1624291	RGD
G	Mael	maelstrom spermatogenic transposon silencer			ISO	13	81,935,141	81,975,026	RGD:1624291	RGD
G	Mael	maelstrom spermatogenic transposon silencer			IEA	13	81,935,141	81,975,026	RGD:1600115	ENSEMBL
G	Mapk1	mitogen activated protein kinase 1			ISO	11	85,968,732	86,030,387	RGD:1624291	RGD
G	Mapk1	mitogen activated protein kinase 1			IEA	11	85,968,732	86,030,387	RGD:1600115	ENSEMBL
G	Mapk14	mitogen activated protein kinase 14			ISO	20	6,939,249	7,000,378	RGD:1624291	RGD
G	Mapk3	mitogen activated protein kinase 3			ISO	1	185,935,044	185,941,245	RGD:1624291	RGD
G	Mapkapk2	mitogen-activated protein kinase-activated protein kinase 2			ISO	13	43,994,943	44,041,504	RGD:1624291	RGD
G	Mbd4	methyl-CpG binding domain protein 4			ISO	4	151,972,272	151,981,633	RGD:1624291	RGD
G	Mcm7	minichromosome maintenance complex component 7			ISO	12	17,607,250	17,614,508	RGD:1624291	RGD
G	Mcm7	minichromosome maintenance complex component 7			IEA	12	17,607,250	17,614,508	RGD:1600115	ENSEMBL
G	Mcm8	minichromosome maintenance complex component 8			ISS	3	120,614,429	120,644,673	RGD:1600115	UniProtKB
G	Mcm8	minichromosome maintenance complex component 8			ISO	3	120,614,429	120,644,673	RGD:1624291	RGD
G	Mcm8	minichromosome maintenance complex component 8			ISO	3	120,614,429	120,644,673	RGD:1624291	RGD
G	Mcmdc1	minichromosome maintenance deficient domain containing 1			ISS				RGD:1600115	UniProtKB
G	Mcts1	malignant T cell amplified sequence 1			IEA	X	6,764,788	6,776,128	RGD:1600115	UniProtKB
G	Men1	multiple endocrine neoplasia I			ISO	1	209,114,987	209,120,837	RGD:1624291	RGD
G	Mgmt	O-6-methylguanine-DNA methyltransferase			ISO	1	196,629,366	196,866,937	RGD:1624291	RGD
G	Mgmt	O-6-methylguanine-DNA methyltransferase			ISO	1	196,629,366	196,866,937	RGD:1624291	RGD
G	Mgmt	O-6-methylguanine-DNA methyltransferase			IEP	1	196,629,366	196,866,937	RGD:2316926	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Mlh3	mutL homolog 3 (E. coli)			ISO	6	109,280,910	109,318,893	RGD:1624291	RGD
G	Mre11a	MRE11 meiotic recombination 11 homolog A (S. cerevisiae)			ISO	8	11,588,409	11,632,483	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Myc	myelocytomatosis oncogene			ISO	7	98,953,142	98,958,060	RGD:1624291	RGD
G	Myc	myelocytomatosis oncogene			ISO	7	98,953,142	98,958,060	RGD:1624291	RGD
G	Myc	myelocytomatosis oncogene			IEA	7	98,953,142	98,958,060	RGD:1600115	ENSEMBL
G	Myc	myelocytomatosis oncogene			ISS	7	98,953,142	98,958,060	RGD:1600115	UniProtKB
G	Nabp1	nucleic acid binding protein 1			ISO	9	47,194,891	47,201,876	RGD:1624291	RGD
G	Nabp1	nucleic acid binding protein 1			ISS	9	47,194,891	47,201,876	RGD:1600115	UniProtKB
G	Nabp2	nucleic acid binding protein 2			ISO	7	1,693,100	1,698,698	RGD:1624291	RGD
G	Nabp2	nucleic acid binding protein 2			ISO	7	1,693,100	1,698,698	RGD:1624291	RGD
G	Nabp2	nucleic acid binding protein 2			ISS	7	1,693,100	1,698,698	RGD:1600115	UniProtKB
G	Ncoa6	nuclear receptor coactivator 6			ISO	3	145,886,874	145,957,928	RGD:1624291	RGD
G	Ncoa6	nuclear receptor coactivator 6			IEA	3	145,886,874	145,957,928	RGD:1600115	ENSEMBL
G	Nek1	NIMA-related kinase 1			ISO	16	32,317,987	32,438,010	RGD:1624291	RGD
G	Nfatc2	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2			ISO	3	159,656,032	159,773,643	RGD:1624291	RGD
G	Nfatc2	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2			IEA	3	159,656,032	159,773,643	RGD:1600115	ENSEMBL
G	Nipbl	Nipped-B homolog (Drosophila)			ISO	2	57,908,828	58,099,422	RGD:1624291	RGD
G	Ns5atp9	NS5A (hepatitis C virus) transactivated protein 9			ISO	8	70,159,283	70,172,116	RGD:1624291	RGD
G	Ns5atp9	NS5A (hepatitis C virus) transactivated protein 9			ISO	8	70,159,283	70,172,116	RGD:1624291	RGD
G	Ns5atp9	NS5A (hepatitis C virus) transactivated protein 9			ISS	8	70,159,283	70,172,116	RGD:1600115	UniProtKB
G	Otub1	OTU domain, ubiquitin aldehyde binding 1			ISS	1	209,871,581	209,879,518	RGD:1600115	UniProtKB
G	Otub1	OTU domain, ubiquitin aldehyde binding 1			ISO	1	209,871,581	209,879,518	RGD:1624291	RGD
G	Parg	poly (ADP-ribose) glycohydrolase			ISO	16	7,689,492	7,798,104	RGD:1624291	RGD
G	Parg	poly (ADP-ribose) glycohydrolase			IEA	16	7,689,492	7,798,104	RGD:1600115	ENSEMBL
G	Paxip1	PAX interacting (with transcription-activation domain) protein 1			ISO	4	2,790,532	2,839,246	RGD:1624291	RGD
G	Pgap2	post-GPI attachment to proteins 2			ISO	1	159,696,924	159,722,582	RGD:1624291	RGD
G	Phf1	PHD finger protein 1			ISO	20	5,170,270	5,175,027	RGD:1624291	RGD
G	Pidd	p53-induced death domain protein			IEA	1	201,626,042	201,631,182	RGD:1600115	InterPro
G	Pidd	p53-induced death domain protein			ISO	1	201,626,042	201,631,182	RGD:1624291	RGD
G	Plk3	polo-like kinase 3			ISO	5	137,443,540	137,448,715	RGD:1624291	RGD
G	Plk3	polo-like kinase 3			ISO	5	137,443,540	137,448,715	RGD:1624291	RGD
G	Plk3	polo-like kinase 3			ISO	5	137,443,540	137,448,715	RGD:1624291	RGD
G	Plk3	polo-like kinase 3			ISS	5	137,443,540	137,448,715	RGD:1600115	UniProtKB
G	Plk3	polo-like kinase 3			ISS	5	137,443,540	137,448,715	RGD:1600115	UniProtKB
G	Plk5	polo-like kinase 5			ISO	7	10,858,118	10,866,430	RGD:1624291	RGD
G	Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1			ISO	18	62,914,845	62,918,832	RGD:1624291	RGD
G	Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1			IEA	18	62,914,845	62,918,832	RGD:1600115	ENSEMBL
G	Pms2	postmeiotic segregation increased 2 (S. cerevisiae)			ISO	12	11,004,507	11,028,754	RGD:1624291	RGD
G	Polb	polymerase (DNA directed), beta			ISO	16	73,864,702	73,888,011	RGD:1624291	RGD
G	Polb	polymerase (DNA directed), beta			ISS	16	73,864,702	73,888,011	RGD:1600115	UniProtKB
G	Psen1	presenilin 1			ISO	6	107,737,543	107,776,357	RGD:1624291	RGD
G	Psen1	presenilin 1			IEA	6	107,737,543	107,776,357	RGD:1600115	ENSEMBL
G	Rad17	RAD17 homolog (S. pombe)			ISO	2	31,424,504	31,454,313	RGD:1624291	RGD
G	Rad17	RAD17 homolog (S. pombe)			ISO	2	31,424,504	31,454,313	RGD:1624291	RGD
G	Rad18	RAD18 homolog (S. cerevisiae)			ISO	4	148,452,664	148,543,743	RGD:1624291	RGD
G	Rad23a	RAD23 homolog A (S. cerevisiae)			ISO	19	24,971,070	24,976,901	RGD:1624291	RGD
G	Rad23b	RAD23 homolog B (S. cerevisiae)			ISO	5	73,256,542	73,294,296	RGD:1624291	RGD
G	Rad50	RAD50 homolog (S. cerevisiae)			ISO	10	39,112,733	39,164,694	RGD:1624291	RGD
G	Rad54l	RAD54 like (S. cerevisiae)			ISO				RGD:1624291	RGD
G	Rad9a	RAD9 homolog A (S. pombe)			ISO	1	206,778,534	206,785,230	RGD:1624291	RGD
G	Rassf1	Ras association (RalGDS/AF-6) domain family member 1			ISO	8	112,798,863	112,810,004	RGD:1624291	RGD
G	Rassf1	Ras association (RalGDS/AF-6) domain family member 1			IEA	8	112,798,863	112,810,004	RGD:1600115	ENSEMBL
G	Rbbp5	retinoblastoma binding protein 5			IEA	13	45,364,906	45,391,757	RGD:1600115	ENSEMBL
G	Rbbp5	retinoblastoma binding protein 5			ISO	13	45,364,906	45,391,757	RGD:1624291	RGD
G	RGD1308923	LOC362678			ISS	5	172,049,605	172,057,673	RGD:1600115	UniProtKB
G	RGD1308923	LOC362678			ISO	5	172,049,605	172,057,673	RGD:1624291	RGD
G	RGD1308923	LOC362678			ISO	5	172,049,605	172,057,673	RGD:1624291	RGD
G	RGD1308923	LOC362678			ISO	5	172,049,605	172,057,673	RGD:1624291	RGD
G	RGD1308923	LOC362678			ISO	5	172,049,605	172,057,673	RGD:1624291	RGD
G	RGD1559690	similar to hypothetical protein FLJ25416			ISO	1	149,685,954	149,710,264	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISS	11	70,304,917	70,328,010	RGD:1600115	UniProtKB
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf169	ring finger protein 169			ISO	1	157,289,186	157,313,978	RGD:1624291	RGD
G	Rnf169	ring finger protein 169			ISO	1	157,289,186	157,313,978	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISS	20	7,929,802	7,954,697	RGD:1600115	UniProtKB
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISS	20	7,929,802	7,954,697	RGD:1600115	UniProtKB
G	Rps27l	ribosomal protein S27-like			ISO				RGD:1624291	RGD
G	Rps3	ribosomal protein S3			ISO	1	156,811,470	156,816,770	RGD:1624291	RGD
G	Sgk1	serum/glucocorticoid regulated kinase 1			ISO	1	23,501,257	23,506,651	RGD:1624291	RGD
G	Sgk1	serum/glucocorticoid regulated kinase 1			IEA	1	23,501,257	23,506,651	RGD:1600115	ENSEMBL
G	Sirt1	sirtuin 1			ISO	20	25,675,302	25,686,494	RGD:1624291	RGD
G	Spata18	spermatogenesis associated 18			ISO	14	36,928,255	36,954,960	RGD:1624291	RGD
G	Spata18	spermatogenesis associated 18			ISS	14	36,928,255	36,954,960	RGD:1600115	UniProtKB
G	Spdya	speedy homolog A (Xenopus laevis)			ISO	6	24,016,267	24,060,920	RGD:1624291	RGD
G	Spdya	speedy homolog A (Xenopus laevis)			IEA	6	24,016,267	24,060,920	RGD:1600115	ENSEMBL
G	Sprtn	SprT-like N-terminal domain			ISS	19	55,069,130	55,073,670	RGD:1600115	UniProtKB
G	Sprtn	SprT-like N-terminal domain			ISO	19	55,069,130	55,073,670	RGD:1624291	RGD
G	Sprtn	SprT-like N-terminal domain			ISO	19	55,069,130	55,073,670	RGD:1624291	RGD
G	Sprtn	SprT-like N-terminal domain			ISO	19	55,069,130	55,073,670	RGD:1624291	RGD
G	Sprtn	SprT-like N-terminal domain			ISO	19	55,069,130	55,073,670	RGD:1624291	RGD
G	Sprtn	SprT-like N-terminal domain			ISO	19	55,069,130	55,073,670	RGD:1624291	RGD
G	Stk11	serine/threonine kinase 11			IEA	7	11,086,760	11,103,522	RGD:1600115	UniProtKB
G	Taok1	TAO kinase 1			ISO	10	66,503,966	66,584,625	RGD:1624291	RGD
G	Taok1	TAO kinase 1			ISS	10	66,503,966	66,584,625	RGD:1600115	UniProtKB
G	Taok2	TAO kinase 2			ISO	1	186,049,010	186,063,423	RGD:1624291	RGD
G	Taok2	TAO kinase 2			ISS	1	186,049,010	186,063,423	RGD:1600115	UniProtKB
G	Taok3	TAO kinase 3			ISO	12	40,502,499	40,583,816	RGD:1624291	RGD
G	Taok3	TAO kinase 3			ISS	12	40,502,499	40,583,816	RGD:1600115	UniProtKB
G	Timeless	timeless circadian clock			IEA	7	1,516,568	1,540,512	RGD:1600115	UniProtKB
G	Tipin	timeless interacting protein			IEA	8	68,480,152	68,502,451	RGD:1600115	InterPro
G	Tipinl1	TIMELESS interacting protein like 1			IEA	9	112,832,275	112,833,123	RGD:1600115	InterPro
G	Tlk2	tousled-like kinase 2			IEA	10	94,583,881	94,675,624	RGD:1600115	ENSEMBL
G	Tlk2	tousled-like kinase 2			ISO	10	94,583,881	94,675,624	RGD:1624291	RGD
G	Top2a	topoisomerase (DNA) II alpha			ISO	10	87,771,337	87,800,960	RGD:1624291	RGD
G	Topbp1	topoisomerase (DNA) II binding protein 1			ISO	8	108,316,569	108,360,753	RGD:1624291	RGD
G	Topors	topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase			ISO	5	57,663,121	57,676,619	RGD:1624291	RGD
G	Topors	topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase			ISO	5	57,663,121	57,676,619	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53bp1	tumor protein p53 binding protein 1			ISO	3	107,994,425	108,071,133	RGD:1624291	RGD
G	Tp73	tumor protein p73			ISO	5	170,848,979	171,078,739	RGD:1624291	RGD
G	Tp73	tumor protein p73			ISO	5	170,848,979	171,078,739	RGD:1624291	RGD
G	Trip12	thyroid hormone receptor interactor 12			ISS	9	83,961,411	84,085,077	RGD:1600115	UniProtKB
G	Trip12	thyroid hormone receptor interactor 12			ISO	9	83,961,411	84,085,077	RGD:1624291	RGD
G	Ube2b	ubiquitin-conjugating enzyme E2B			ISO	10	37,509,322	37,523,900	RGD:1624291	RGD
G	Ube2t	ubiquitin-conjugating enzyme E2T (putative)			ISO	13	47,924,340	47,934,842	RGD:1624291	RGD
G	Ubr5	ubiquitin protein ligase E3 component n-recognin 5			ISO	7	73,467,676	73,545,246	RGD:1624291	RGD
G	Ubr5	ubiquitin protein ligase E3 component n-recognin 5			ISO	7	73,467,676	73,545,246	RGD:1624291	RGD
G	Ubr5	ubiquitin protein ligase E3 component n-recognin 5			ISS	7	73,467,676	73,545,246	RGD:1600115	UniProtKB
G	Usp16	ubiquitin specific peptidase 16			ISO	11	27,204,766	27,233,883	RGD:1624291	RGD
G	Usp16	ubiquitin specific peptidase 16			ISS	11	27,204,766	27,233,883	RGD:1600115	UniProtKB
G	Usp28	ubiquitin specific peptidase 28			ISO	8	52,245,642	52,305,922	RGD:1624291	RGD
G	Usp47	ubiquitin specific peptidase 47			ISO	1	169,836,253	169,920,055	RGD:1624291	RGD
G	Vav3	vav 3 guanine nucleotide exchange factor			ISO	2	204,982,222	205,326,505	RGD:1624291	RGD
G	Vcp	valosin-containing protein			ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Vcp	valosin-containing protein			ISS	5	59,472,100	59,491,508	RGD:1600115	UniProtKB
G	Vcp	valosin-containing protein			ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Vcp	valosin-containing protein			ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Wrn	Werner syndrome, RecQ helicase-like			ISO	16	62,535,144	62,668,700	RGD:1624291	RGD
G	Xiap	X-linked inhibitor of apoptosis			ISO	X	3,011,520	3,047,798	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
G	Xrcc1	X-ray repair complementing defective repair in Chinese hamster cells 1			IEP	1	79,834,167	79,860,300	RGD:727220	RGD
G	Xrcc2	X-ray repair complementing defective repair in Chinese hamster cells 2			ISO	4	4,817,222	4,835,725	RGD:1624291	RGD
G	Xrcc2	X-ray repair complementing defective repair in Chinese hamster cells 2			ISO	4	4,817,222	4,835,725	RGD:1624291	RGD
G	Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			ISO	7	120,401,944	120,422,923	RGD:1624291	RGD
G	Yy1	YY1 transcription factor			ISO	6	133,132,419	133,156,686	RGD:1624291	RGD
G	Yy1	YY1 transcription factor			ISO	6	133,132,419	133,156,686	RGD:1624291	RGD
G	Zbtb40	zinc finger and BTB domain containing 40			ISS	5	155,748,784	155,813,330	RGD:1600115	UniProtKB
G	Zbtb40	zinc finger and BTB domain containing 40			ISO	5	155,748,784	155,813,330	RGD:1624291	RGD
G	Zmat3	zinc finger, matrin type 3			IEA	2	118,526,985	118,537,727	RGD:1600115	UniProtKB
G	Zranb3	zinc finger, RAN-binding domain containing 3			ISO	13	40,648,221	40,803,738	RGD:1624291	RGD
G	Zranb3	zinc finger, RAN-binding domain containing 3			ISO	13	40,648,221	40,803,738	RGD:1624291	RGD
G	Zranb3	zinc finger, RAN-binding domain containing 3			ISO	13	40,648,221	40,803,738	RGD:1624291	RGD
base-excision repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Ccno	cyclin O			ISO	2	44,377,953	44,381,020	RGD:1624291	RGD
G	Ccno	cyclin O			IEA	2	44,377,953	44,381,020	RGD:1600115	ENSEMBL
G	Dna2	DNA replication helicase 2 homolog (yeast)			ISO	20	25,288,326	25,316,851	RGD:1624291	RGD
G	Dna2	DNA replication helicase 2 homolog (yeast)			IEA	20	25,288,326	25,316,851	RGD:1600115	ENSEMBL
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			ISO	16	8,024,881	8,091,587	RGD:1624291	RGD
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			IEA	16	8,024,881	8,091,587	RGD:1600115	ENSEMBL
G	Fen1	flap structure-specific endonuclease 1			IEA	1	212,688,118	212,692,486	RGD:1600115	UniProtKB
G	Hmga2	high mobility group AT-hook 2			ISO	7	59,638,555	59,753,791	RGD:1624291	RGD
G	Hmga2	high mobility group AT-hook 2			ISS	7	59,638,555	59,753,791	RGD:1600115	UniProtKB
G	LOC501546	hypothetical protein LOC501546			ISS	X	41,269,837	41,397,687	RGD:1600115	UniProtKB
G	Mbd4	methyl-CpG binding domain protein 4			IEA	4	151,972,272	151,981,633	RGD:1600115	InterPro
G	Mpg	N-methylpurine-DNA glycosylase			ISO	10	15,643,334	15,649,561	RGD:1624291	RGD
G	Mpg	N-methylpurine-DNA glycosylase			ISO	10	15,643,334	15,649,561	RGD:1624291	RGD
G	Mpg	N-methylpurine-DNA glycosylase			IEA	10	15,643,334	15,649,561	RGD:1600115	ENSEMBL
G	Mpg	N-methylpurine-DNA glycosylase			IEA	10	15,643,334	15,649,561	RGD:1600115	InterPro
G	Mutyh	mutY homolog (E. coli)			IEA	5	137,103,958	137,115,897	RGD:1600115	InterPro
G	Neil1	nei endonuclease VIII-like 1 (E. coli)			ISO	8	60,898,923	60,904,767	RGD:1624291	RGD
G	Neil1	nei endonuclease VIII-like 1 (E. coli)			IEA	8	60,898,923	60,904,767	RGD:1600115	InterPro
G	Neil2	nei endonuclease VIII-like 2 (E. coli)			IEA	15	42,458,573	42,468,055	RGD:1600115	InterPro
G	Neil3	nei endonuclease VIII-like 3 (E. coli)			ISO	16	41,232,815	41,296,032	RGD:1624291	RGD
G	Neil3	nei endonuclease VIII-like 3 (E. coli)			IEA	16	41,232,815	41,296,032	RGD:1600115	InterPro
G	Ogg1	8-oxoguanine DNA glycosylase			IDA	4	149,209,745	149,219,081	RGD:729091	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			ISO	4	149,209,745	149,219,081	RGD:1624291	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			ISO	4	149,209,745	149,219,081	RGD:1624291	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			IEA	4	149,209,745	149,219,081	RGD:1600115	InterPro
G	Parp1	poly (ADP-ribose) polymerase 1			ISO	13	96,309,670	96,341,486	RGD:1624291	RGD
G	Parp1	poly (ADP-ribose) polymerase 1			IEA	13	96,309,670	96,341,486	RGD:1600115	ENSEMBL
G	Parp2	poly (ADP-ribose) polymerase 2			ISO	15	26,790,296	26,801,086	RGD:1624291	RGD
G	Parp2	poly (ADP-ribose) polymerase 2			IEA	15	26,790,296	26,801,086	RGD:1600115	ENSEMBL
G	Polb	polymerase (DNA directed), beta			TAS	16	73,864,702	73,888,011	RGD:633643	RGD
G	Polb	polymerase (DNA directed), beta			ISO	16	73,864,702	73,888,011	RGD:1624291	RGD
G	Polb	polymerase (DNA directed), beta			ISO	16	73,864,702	73,888,011	RGD:1624291	RGD
G	Polb	polymerase (DNA directed), beta			ISS	16	73,864,702	73,888,011	RGD:1600115	UniProtKB
G	Rpa2	replication protein A2			NAS	5	152,369,550	152,380,370	RGD:729744	RGD
G	Smug1	single-strand-selective monofunctional uracil-DNA glycosylase 1			ISO	7	142,064,428	142,066,553	RGD:1624291	RGD
G	Smug1	single-strand-selective monofunctional uracil-DNA glycosylase 1			IDA	7	142,064,428	142,066,553	RGD:634191	HGNC
G	Tdg	thymine-DNA glycosylase			ISO	7	23,300,450	23,320,095	RGD:1624291	RGD
G	Tdg	thymine-DNA glycosylase			ISO	7	23,300,450	23,320,095	RGD:1624291	RGD
G	Ung	uracil-DNA glycosylase			IDA	12	43,520,629	43,528,873	RGD:634481	RGD
G	Ung	uracil-DNA glycosylase			TAS	12	43,520,629	43,528,873	RGD:1599703	RGD
G	Ung	uracil-DNA glycosylase			TAS	12	43,520,629	43,528,873	RGD:1599704	RGD
G	Usp47	ubiquitin specific peptidase 47			ISO	1	169,836,253	169,920,055	RGD:1624291	RGD
G	Usp47	ubiquitin specific peptidase 47			IEA	1	169,836,253	169,920,055	RGD:1600115	ENSEMBL
G	Wrn	Werner syndrome, RecQ helicase-like			ISO	16	62,535,144	62,668,700	RGD:1624291	RGD
G	Xrcc1	X-ray repair complementing defective repair in Chinese hamster cells 1			TAS	1	79,834,167	79,860,300	RGD:727220	RGD
base-excision repair, AP site formation
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Nthl1	nth (endonuclease III)-like 1 (E.coli)			ISO	10	13,883,284	13,889,790	RGD:1624291	RGD
G	Nthl1	nth (endonuclease III)-like 1 (E.coli)			IEA	10	13,883,284	13,889,790	RGD:1600115	ENSEMBL
base-excision repair, DNA ligation
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Hmgb1	high mobility group box 1			ISO				RGD:1624291	RGD
G	Hmgb2	high mobility group box 2			ISO	16	36,131,304	36,133,878	RGD:1624291	RGD
G	Hmgb2	high mobility group box 2			ISS	16	36,131,304	36,133,878	RGD:1600115	UniProtKB
base-excision repair, gap-filling
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Pcna	proliferating cell nuclear antigen			ISO	3	120,008,715	120,012,589	RGD:1624291	RGD
G	Polb	polymerase (DNA directed), beta			ISO	16	73,864,702	73,888,011	RGD:1624291	RGD
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			ISO	1	95,010,719	95,021,686	RGD:1624291	RGD
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			ISO	1	95,010,719	95,021,686	RGD:1624291	RGD
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			ISO	1	95,010,719	95,021,686	RGD:1624291	RGD
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			IEA	1	95,010,719	95,021,686	RGD:1600115	ENSEMBL
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			IEA	1	95,010,719	95,021,686	RGD:1600115	ENSEMBL
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			IBA	1	95,010,719	95,021,686	RGD:1600115	RefGenome
G	Pole	polymerase (DNA directed), epsilon, catalytic subunit			ISO	12	46,491,498	46,539,988	RGD:1624291	RGD
G	Pole	polymerase (DNA directed), epsilon, catalytic subunit			IEA	12	46,491,498	46,539,988	RGD:1600115	ENSEMBL
G	Polg	polymerase (DNA directed), gamma			ISO	1	135,197,075	135,212,178	RGD:1624291	RGD
G	Polg	polymerase (DNA directed), gamma			IEA	1	135,197,075	135,212,178	RGD:1600115	ENSEMBL
G	RGD1561931	similar to KIAA2022 protein			IBA	X	92,073,589	92,081,623	RGD:1600115	RefGenome
DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atr	ataxia telangiectasia and Rad3 related			ISO	8	100,936,342	101,014,881	RGD:1624291	RGD
G	Atr	ataxia telangiectasia and Rad3 related			ISO	8	100,936,342	101,014,881	RGD:1624291	RGD
G	Cep63	centrosomal protein 63			ISS	8	107,548,503	107,600,193	RGD:1600115	UniProtKB
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISS	8	37,954,322	37,974,748	RGD:1600115	UniProtKB
G	Chek2	checkpoint kinase 2			IMP	12	45,933,900	45,965,427	RGD:633752	RGD
G	Clock	clock circadian regulator			ISO	14	34,218,472	34,258,054	RGD:1624291	RGD
G	Clock	clock circadian regulator			IEA	14	34,218,472	34,258,054	RGD:1600115	ENSEMBL
G	Clspn	claspin			ISO	5	145,930,764	145,965,672	RGD:1624291	RGD
G	E2f1	E2F transcription factor 1			ISO	3	145,032,489	145,043,729	RGD:1624291	RGD
G	E2f1	E2F transcription factor 1			IEA	3	145,032,489	145,043,729	RGD:1600115	ENSEMBL
G	E2f1	E2F transcription factor 1			ISS	3	145,032,489	145,043,729	RGD:1600115	UniProtKB
G	H2afx	H2A histone family, member X		NOT	ISO	8	47,312,609	47,313,938	RGD:1624291	RGD
G	H2afx	H2A histone family, member X			ISO	8	47,312,609	47,313,938	RGD:1624291	RGD
G	H2afx	H2A histone family, member X			IEA	8	47,312,609	47,313,938	RGD:1600115	ENSEMBL
G	Hinfp	histone H4 transcription factor			IEA	8	47,274,973	47,281,678	RGD:1600115	ENSEMBL
G	Hinfp	histone H4 transcription factor			ISO	8	47,274,973	47,281,678	RGD:1624291	RGD
G	Hus1	HUS1 checkpoint homolog (S. pombe)			ISO	14	89,527,997	89,542,730	RGD:1624291	RGD
G	Hus1	HUS1 checkpoint homolog (S. pombe)			ISO	14	89,527,997	89,542,730	RGD:1624291	RGD
G	Hus1	HUS1 checkpoint homolog (S. pombe)			IEA	14	89,527,997	89,542,730	RGD:1600115	ENSEMBL
G	Hus1b	HUS1 checkpoint homolog b (S. pombe)			IEA	17	39,978,923	39,979,753	RGD:1600115	InterPro
G	Ints7	integrator complex subunit 7			IEA	13	107,641,207	107,696,311	RGD:1600115	ENSEMBL
G	Ints7	integrator complex subunit 7			ISO	13	107,641,207	107,696,311	RGD:1624291	RGD
G	Mapk14	mitogen activated protein kinase 14			ISO	20	6,939,249	7,000,378	RGD:1624291	RGD
G	Mapk14	mitogen activated protein kinase 14			IEA	20	6,939,249	7,000,378	RGD:1600115	ENSEMBL
G	MGC94282	similar to 5930416I19Rik protein			IEA	4	165,378,057	165,383,443	RGD:1600115	ENSEMBL
G	Nbn	nibrin			ISO	5	30,541,610	30,576,168	RGD:1624291	RGD
G	Ptpn11	protein tyrosine phosphatase, non-receptor type 11			ISO	12	36,501,886	36,558,055	RGD:1624291	RGD
G	Ptpn11	protein tyrosine phosphatase, non-receptor type 11			IEA	12	36,501,886	36,558,055	RGD:1600115	ENSEMBL
G	Rad1	RAD1 homolog (S. pombe)			ISO	2	59,837,934	59,845,973	RGD:1624291	RGD
G	Rad1	RAD1 homolog (S. pombe)			IEA	2	59,837,934	59,845,973	RGD:1600115	ENSEMBL
G	Rad17	RAD17 homolog (S. pombe)			ISO	2	31,424,504	31,454,313	RGD:1624291	RGD
G	Rad17	RAD17 homolog (S. pombe)			IEA	2	31,424,504	31,454,313	RGD:1600115	ENSEMBL
G	Rad9a	RAD9 homolog A (S. pombe)			IEA	1	206,778,534	206,785,230	RGD:1600115	ENSEMBL
G	Rad9a	RAD9 homolog A (S. pombe)			ISO	1	206,778,534	206,785,230	RGD:1624291	RGD
G	Rad9b	RAD9 homolog B (S. pombe)			IEA	12	35,412,463	35,443,713	RGD:1600115	InterPro
G	Tipinl1	TIMELESS interacting protein like 1			ISO	9	112,832,275	112,833,123	RGD:1624291	RGD
G	Tiprl	TIP41, TOR signaling pathway regulator-like (S. cerevisiae)			ISO	13	80,969,815	80,994,662	RGD:1624291	RGD
G	Tiprl	TIP41, TOR signaling pathway regulator-like (S. cerevisiae)			IEA	13	80,969,815	80,994,662	RGD:1600115	ENSEMBL
G	Usp28	ubiquitin specific peptidase 28			ISS	8	52,245,642	52,305,922	RGD:1600115	UniProtKB
G	Usp28	ubiquitin specific peptidase 28			ISO	8	52,245,642	52,305,922	RGD:1624291	RGD
G	Zak	sterile alpha motif and leucine zipper containing kinase AZK			ISO	3	54,767,724	54,915,022	RGD:1624291	RGD
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Casp2	caspase 2			ISO	4	70,029,728	70,047,164	RGD:1624291	RGD
G	Casp2	caspase 2			IEA	4	70,029,728	70,047,164	RGD:1600115	ENSEMBL
G	Cdkn1a	cyclin-dependent kinase inhibitor 1A			ISO	20	7,376,325	7,386,778	RGD:1624291	RGD
G	Cdkn1a	cyclin-dependent kinase inhibitor 1A			IEA	20	7,376,325	7,386,778	RGD:1600115	ENSEMBL
G	Cradd	CASP2 and RIPK1 domain containing adaptor with death domain			IEA	7	32,504,279	32,517,581	RGD:1600115	ENSEMBL
G	Mdm2	p53 E3 ubiquitin protein ligase			ISO	7	56,996,694	57,020,926	RGD:1624291	RGD
G	Mdm2	p53 E3 ubiquitin protein ligase			IEA	7	56,996,694	57,020,926	RGD:1600115	ENSEMBL
G	Muc1	mucin 1, cell surface associated			ISO	2	181,399,482	181,403,640	RGD:1624291	RGD
G	Pcbp4	poly(rC) binding protein 4			ISO	8	111,597,539	111,607,775	RGD:1624291	RGD
G	Pidd	p53-induced death domain protein			ISO	1	201,626,042	201,631,182	RGD:1624291	RGD
G	Pml	promyelocytic leukemia			ISO	8	62,020,438	62,051,927	RGD:1624291	RGD
G	Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma			ISO	6	135,204,405	135,299,068	RGD:1624291	RGD
G	Ptprv	protein tyrosine phosphatase, receptor type, V			ISO	13	48,070,488	48,090,682	RGD:1624291	RGD
G	Rbm38	RNA binding motif protein 38			IEA	3	163,885,488	163,898,314	RGD:1600115	ENSEMBL
G	Sox4	SRY (sex determining region Y)-box 4			ISO	17	42,172,863	42,177,590	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
DNA double-strand break processing involved in repair via single-strand annealing
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Rbbp8	retinoblastoma binding protein 8			IEA	18	3,266,565	3,333,153	RGD:1600115	ENSEMBL
G	Rbbp8	retinoblastoma binding protein 8			ISO	18	3,266,565	3,333,153	RGD:1624291	RGD
G	Rbbp8	retinoblastoma binding protein 8			ISO	18	3,266,565	3,333,153	RGD:1624291	RGD
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			ISO	1	185,843,372	185,848,919	RGD:1624291	RGD
G	Slx4	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)			ISO	10	11,778,216	11,816,839	RGD:1624291	RGD
DNA repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Alkbh1	alkB, alkylation repair homolog 1 (E. coli)			ISO	6	111,662,506	111,682,061	RGD:1624291	RGD
G	Alkbh1	alkB, alkylation repair homolog 1 (E. coli)			ISO	6	111,662,506	111,682,061	RGD:1624291	RGD
G	Alkbh3	alkB, alkylation repair homolog 3 (E. coli)			ISO	3	78,386,098	78,418,432	RGD:1624291	RGD
G	Alkbh3	alkB, alkylation repair homolog 3 (E. coli)			ISS	3	78,386,098	78,418,432	RGD:1600115	UniProtKB
G	Apex1	APEX nuclease (multifunctional DNA repair enzyme) 1			ISO	15	26,904,124	26,906,224	RGD:1624291	RGD
G	Apex1	APEX nuclease (multifunctional DNA repair enzyme) 1			ISS	15	26,904,124	26,906,224	RGD:1600115	UniProtKB
G	Apex2	APEX nuclease (apurinic/apyrimidinic endonuclease) 2			IEA	X	39,811,484	39,832,225	RGD:1600115	InterPro
G	Asf1a	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)			IEA	20	32,261,624	32,276,470	RGD:1600115	ENSEMBL
G	Asf1a	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)			ISO	20	32,261,624	32,276,470	RGD:1624291	RGD
G	Aste1	asteroid homolog 1 (Drosophila)			IEA	8	110,501,422	110,516,965	RGD:1600115	InterPro
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated			IEA	8	56,894,746	56,996,565	RGD:1600115	ENSEMBL
G	Atr	ataxia telangiectasia and Rad3 related			ISO	8	100,936,342	101,014,881	RGD:1624291	RGD
G	Atrx	alpha thalassemia/mental retardation syndrome X-linked			IEA	X	93,903,794	94,051,337	RGD:1600115	UniProtKB
G	Bard1	BRCA1 associated RING domain 1			IEA	9	70,120,151	70,198,591	RGD:1600115	UniProtKB
G	Blm	Bloom syndrome, RecQ helicase-like			ISO	1	136,271,573	136,358,077	RGD:1624291	RGD
G	Brca1	breast cancer 1, early onset			TAS	10	90,513,630	90,572,676	RGD:625542	RGD
G	Brca1	breast cancer 1, early onset			IEA	10	90,513,630	90,572,676	RGD:1600115	InterPro
G	Cdk2	cyclin dependent kinase 2			IEA	7	2,000,196	2,007,682	RGD:1600115	UniProtKB
G	Cdk7	cyclin-dependent kinase 7			IEA	2	31,500,629	31,525,590	RGD:1600115	UniProtKB
G	Cdk9	cyclin-dependent kinase 9			IEA	3	11,672,861	11,677,709	RGD:1600115	UniProtKB
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			IEA	8	37,954,322	37,974,748	RGD:1600115	ENSEMBL
G	Chrna4	cholinergic receptor, nicotinic, alpha 4 (neuronal)			ISO	3	170,171,214	170,185,998	RGD:1624291	RGD
G	Cry1	cryptochrome 1 (photolyase-like)			IEA	7	20,643,879	20,709,216	RGD:1600115	InterPro
G	Cry2	cryptochrome 2 (photolyase-like)			IEA	3	76,802,782	76,830,902	RGD:1600115	InterPro
G	Dclre1b	DNA cross-link repair 1B			IEA	2	199,025,718	199,034,230	RGD:1600115	UniProtKB
G	Ddb1	damage-specific DNA binding protein 1, 127kDa			TAS	1	213,095,187	213,120,986	RGD:632554	RGD
G	Dmap1	DNA methyltransferase 1-associated protein 1			IEA	5	137,997,648	138,005,652	RGD:1600115	InterPro
G	Dmc1	DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)			IEA	7	117,476,702	117,520,670	RGD:1600115	InterPro
G	Eepd1	endonuclease/exonuclease/phosphatase family domain containing 1			IEA	8	25,173,429	25,286,246	RGD:1600115	InterPro
G	Eid3	EP300 interacting inhibitor of differentiation 3			IEA	7	23,085,569	23,086,894	RGD:1600115	UniProtKB
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2			ISO				RGD:1624291	RGD
G	Ercc3	excision repair cross-complementing rodent repair deficiency, complementation group 3			ISO	18	24,684,912	24,716,143	RGD:1624291	RGD
G	Ercc4	excision repair cross-complementing rodent repair deficiency, complementation group 4			ISO	10	2,144,262	2,177,554	RGD:1624291	RGD
G	Ercc4	excision repair cross-complementing rodent repair deficiency, complementation group 4			ISO	10	2,144,262	2,177,554	RGD:1624291	RGD
G	Ercc5	excision repair cross-complementing rodent repair deficiency, complementation group 5			ISO	9	43,248,023	43,293,196	RGD:1624291	RGD
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			ISO	16	8,024,881	8,091,587	RGD:1624291	RGD
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			ISO	16	8,024,881	8,091,587	RGD:1624291	RGD
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6			ISO	16	8,024,881	8,091,587	RGD:1624291	RGD
G	Exo1	exonuclease 1			IEA	13	91,619,024	91,644,366	RGD:1600115	InterPro
G	Fan1	FANCD2/FANCI-associated nuclease 1			ISO	1	118,784,938	118,811,928	RGD:1624291	RGD
G	Fancc	Fanconi anemia, complementation group C			IEA	17	7,254,528	7,341,500	RGD:1600115	UniProtKB
G	Fancd2	Fanconi anemia, complementation group D2			IEA	4	149,424,558	149,500,006	RGD:1600115	UniProtKB
G	Fanci	Fanconi anemia, complementation group I			IEA	1	135,144,029	135,196,828	RGD:1600115	InterPro
G	Fancl	Fanconi anemia, complementation group L			IEA	14	107,211,448	107,276,828	RGD:1600115	ENSEMBL
G	Fancl	Fanconi anemia, complementation group L			ISO	14	107,211,448	107,276,828	RGD:1624291	RGD
G	Fbxo6	F-box protein 6			IEA	5	165,223,009	165,226,420	RGD:1600115	UniProtKB
G	Fen1	flap structure-specific endonuclease 1			ISO	1	212,688,118	212,692,486	RGD:1624291	RGD
G	Foxm1	forkhead box M1			IEA	4	165,383,666	165,394,688	RGD:1600115	UniProtKB
G	Gen1	Gen endonuclease homolog 1 (Drosophila)			IEA	6	34,679,618	34,709,812	RGD:1600115	InterPro
G	H2afx	H2A histone family, member X			ISO	8	47,312,609	47,313,938	RGD:1624291	RGD
G	H2afx	H2A histone family, member X			ISO	8	47,312,609	47,313,938	RGD:1624291	RGD
G	Herc2	HECT and RLD domain containing E3 ubiquitin protein ligase 2			ISO	1	107,440,126	107,645,117	RGD:1624291	RGD
G	Hinfp	histone H4 transcription factor			IEA	8	47,274,973	47,281,678	RGD:1600115	ENSEMBL
G	Hinfp	histone H4 transcription factor			ISO	8	47,274,973	47,281,678	RGD:1624291	RGD
G	Hspa1a	heat shock protein 1A			ISO	20	3,945,716	3,959,552	RGD:1624291	RGD
G	Hspa1b	heat shock protein 1B			ISO	20	3,955,274	3,957,748	RGD:1624291	RGD
G	Hus1b	HUS1 checkpoint homolog b (S. pombe)			IEA	17	39,978,923	39,979,753	RGD:1600115	InterPro
G	Inip	INTS3 and NABP interacting protein			IEA	5	77,890,067	77,901,083	RGD:1600115	ENSEMBL
G	Inip	INTS3 and NABP interacting protein			ISO	5	77,890,067	77,901,083	RGD:1624291	RGD
G	Ino80c	INO80 complex subunit C			IEA	18	15,863,573	15,878,207	RGD:1600115	UniProtKB
G	Ino80e	INO80 complex subunit E			IEA	1	186,030,837	186,041,424	RGD:1600115	UniProtKB
G	Ints3	integrator complex subunit 3			IEA	2	182,650,164	182,702,440	RGD:1600115	ENSEMBL
G	Ints3	integrator complex subunit 3			ISO	2	182,650,164	182,702,440	RGD:1624291	RGD
G	Ints3	integrator complex subunit 3			ISO	2	182,650,164	182,702,440	RGD:1624291	RGD
G	Kctd13	potassium channel tetramerisation domain containing 13			TAS	1	186,104,306	186,122,853	RGD:1357162	UniProtKB
G	Kif22	kinesin family member 22			IEA	1	186,205,162	186,293,437	RGD:1600115	InterPro
G	Lig1	ligase I, DNA, ATP-dependent			IDA	1	73,728,892	73,767,429	RGD:724410	RGD
G	Lig1	ligase I, DNA, ATP-dependent			ISO	1	73,728,892	73,767,429	RGD:1624291	RGD
G	Lig1	ligase I, DNA, ATP-dependent		NOT	ISO	1	73,728,892	73,767,429	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	LOC498029	similar to RIKEN cDNA A730011L01 gene			IEA	10	108,867,383	108,882,929	RGD:1600115	ENSEMBL
G	LOC682704	similar to CG7220-PA, isoform A			IEA				RGD:1600115	UniProtKB
G	LOC684558	similar to regulator of nonsense transcripts 1			IEA				RGD:1600115	ENSEMBL
G	Mdc1	mediator of DNA damage checkpoint 1			IEA	20	3,042,953	3,057,607	RGD:1600115	UniProtKB
G	Mgmt	O-6-methylguanine-DNA methyltransferase			ISO	1	196,629,366	196,866,937	RGD:1624291	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Morf4l2	mortality factor 4 like 2			IEA	X	124,382,809	124,393,906	RGD:1600115	UniProtKB
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Msh3	mutS homolog 3 (E. coli)			ISO	2	22,462,934	22,606,874	RGD:1624291	RGD
G	Msh6	mutS homolog 6 (E. coli)			ISO	6	11,525,292	11,542,592	RGD:1624291	RGD
G	Mum1	melanoma associated antigen (mutated) 1			ISS	7	10,976,555	10,993,327	RGD:1600115	UniProtKB
G	Mum1	melanoma associated antigen (mutated) 1			ISO	7	10,976,555	10,993,327	RGD:1624291	RGD
G	Mus81	MUS81 endonuclease homolog (S. cerevisiae)			ISO	1	208,126,545	208,131,820	RGD:1624291	RGD
G	Mus81	MUS81 endonuclease homolog (S. cerevisiae)			IEA	1	208,126,545	208,131,820	RGD:1600115	UniProtKB
G	Nabp1	nucleic acid binding protein 1			ISO	9	47,194,891	47,201,876	RGD:1624291	RGD
G	Nabp1	nucleic acid binding protein 1			ISS	9	47,194,891	47,201,876	RGD:1600115	UniProtKB
G	Nabp2	nucleic acid binding protein 2			ISO	7	1,693,100	1,698,698	RGD:1624291	RGD
G	Nabp2	nucleic acid binding protein 2			ISO	7	1,693,100	1,698,698	RGD:1624291	RGD
G	Nabp2	nucleic acid binding protein 2			ISS	7	1,693,100	1,698,698	RGD:1600115	UniProtKB
G	Neil1	nei endonuclease VIII-like 1 (E. coli)			ISO	8	60,898,923	60,904,767	RGD:1624291	RGD
G	Nono	non-POU domain containing, octamer-binding			IEA	X	89,502,318	89,520,178	RGD:1600115	UniProtKB
G	Npm1	nucleophosmin (nucleolar phosphoprotein B23, numatrin)			ISO	10	18,051,990	18,062,714	RGD:1624291	RGD
G	Npm1	nucleophosmin (nucleolar phosphoprotein B23, numatrin)			ISS	10	18,051,990	18,062,714	RGD:1600115	UniProtKB
G	Nsmce1	non-SMC element 1 homolog (S. cerevisiae)			IEA	1	184,528,343	184,553,824	RGD:1600115	UniProtKB
G	Nsmce4a	non-SMC element 4 homolog A (S. cerevisiae)			IEA	1	189,857,633	189,864,721	RGD:1600115	InterPro
G	Nudt1	nudix (nucleoside diphosphate linked moiety X)-type motif 1			IEA	12	14,775,536	14,778,845	RGD:1600115	InterPro
G	Ogg1	8-oxoguanine DNA glycosylase			TAS	4	149,209,745	149,219,081	RGD:628343	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			ISO	4	149,209,745	149,219,081	RGD:1624291	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			ISO	4	149,209,745	149,219,081	RGD:1624291	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			ISO	4	149,209,745	149,219,081	RGD:1624291	RGD
G	Ogg1	8-oxoguanine DNA glycosylase			ISO	4	149,209,745	149,219,081	RGD:1624291	RGD
G	Otub1	OTU domain, ubiquitin aldehyde binding 1			IEA	1	209,871,581	209,879,518	RGD:1600115	UniProtKB
G	Parpbp	PARP1 binding protein			IEA	7	24,777,634	24,847,083	RGD:1600115	UniProtKB
G	Pms2	postmeiotic segregation increased 2 (S. cerevisiae)			ISO	12	11,004,507	11,028,754	RGD:1624291	RGD
G	Pnkp	polynucleotide kinase 3'-phosphatase			ISO	1	95,330,455	95,335,468	RGD:1624291	RGD
G	Pnkp	polynucleotide kinase 3'-phosphatase			IEA	1	95,330,455	95,335,468	RGD:1600115	ENSEMBL
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit		NOT	ISO	X	80,650,454	80,965,833	RGD:1624291	RGD
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit			ISS	X	80,650,454	80,965,833	RGD:1600115	UniProtKB
G	Polg2	polymerase (DNA directed), gamma 2, accessory subunit			IEA	10	96,120,205	96,130,221	RGD:1600115	InterPro
G	Poli	polymerase (DNA directed), iota			IEA	18	67,212,984	67,230,580	RGD:1600115	InterPro
G	Polk	polymerase (DNA directed) kappa			ISO	2	26,952,022	27,012,088	RGD:1624291	RGD
G	Polm	polymerase (DNA directed), mu			IEA	14	86,491,716	86,501,294	RGD:1600115	InterPro
G	Polq	polymerase (DNA directed), theta			ISO	11	65,474,661	65,577,382	RGD:1624291	RGD
G	Polq	polymerase (DNA directed), theta			ISO	11	65,474,661	65,577,382	RGD:1624291	RGD
G	Polq	polymerase (DNA directed), theta			IEA	11	65,474,661	65,577,382	RGD:1600115	ENSEMBL
G	Prpf19	PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)			IEA	1	213,390,564	213,401,943	RGD:1600115	UniProtKB
G	Pttg1	pituitary tumor-transforming 1			IEA	10	28,527,409	28,532,831	RGD:1600115	UniProtKB
G	Rad1	RAD1 homolog (S. pombe)			IEA	2	59,837,934	59,845,973	RGD:1600115	InterPro
G	Rad17	RAD17 homolog (S. pombe)			IEA	2	31,424,504	31,454,313	RGD:1600115	InterPro
G	Rad18	RAD18 homolog (S. cerevisiae)			IEA	4	148,452,664	148,543,743	RGD:1600115	InterPro
G	Rad50	RAD50 homolog (S. cerevisiae)			ISO	10	39,112,733	39,164,694	RGD:1624291	RGD
G	Rad50	RAD50 homolog (S. cerevisiae)			ISS	10	39,112,733	39,164,694	RGD:1600115	UniProtKB
G	Rad51ap1	RAD51 associated protein 1			IEA	4	163,308,788	163,321,854	RGD:1600115	InterPro
G	Rad51c	Rad51 homolog c (S. cerevisiae)			ISO	10	75,692,205	75,718,369	RGD:1624291	RGD
G	Rad51c	Rad51 homolog c (S. cerevisiae)			IEA	10	75,692,205	75,718,369	RGD:1600115	ENSEMBL
G	Rad52	RAD52 homolog (S. cerevisiae)			IEA	4	156,281,973	156,295,238	RGD:1600115	InterPro
G	Rad9a	RAD9 homolog A (S. pombe)			IEA	1	206,778,534	206,785,230	RGD:1600115	InterPro
G	Rad9b	RAD9 homolog B (S. pombe)			IEA	12	35,412,463	35,443,713	RGD:1600115	InterPro
G	Rdm1	RAD52 motif 1			IEA	10	90,659,199	90,669,362	RGD:1600115	InterPro
G	Recql	RecQ protein-like (DNA helicase Q1-like)			IEA	4	179,927,255	179,951,742	RGD:1600115	InterPro
G	Rev3l	REV3-like, polymerase (DNA directed), zeta, catalytic subunit			ISO	20	43,870,509	44,042,379	RGD:1624291	RGD
G	RGD1564719	similar to RIKEN cDNA C230052I12			IEA	1	87,917,502	87,923,706	RGD:1600115	InterPro
G	Rpain	RPA interacting protein			ISO	10	57,874,557	57,881,526	RGD:1624291	RGD
G	Rpain	RPA interacting protein			IEA	10	57,874,557	57,881,526	RGD:1600115	ENSEMBL
G	Rps27l	ribosomal protein S27-like			IEA				RGD:1600115	ENSEMBL
G	Rps27l	ribosomal protein S27-like			ISO				RGD:1624291	RGD
G	Rrm2b	ribonucleotide reductase M2 B (TP53 inducible)			ISO	7	73,432,161	73,459,541	RGD:1624291	RGD
G	Rtel1	regulator of telomere elongation helicase 1			IEA	3	170,461,613	170,496,959	RGD:1600115	UniProtKB
G	Ruvbl1	RuvB-like 1 (E. coli)			IEA	4	122,556,857	122,591,769	RGD:1600115	UniProtKB
G	Ruvbl2	RuvB-like 2 (E. coli)			IEA	1	95,894,029	95,906,885	RGD:1600115	InterPro
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			ISO	1	185,843,372	185,848,919	RGD:1624291	RGD
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			ISO	1	185,843,372	185,848,919	RGD:1624291	RGD
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			ISO	1	185,843,372	185,848,919	RGD:1624291	RGD
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			ISO	1	185,843,372	185,848,919	RGD:1624291	RGD
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			IEA	1	185,843,372	185,848,919	RGD:1600115	UniProtKB
G	Slx4	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)			ISO	10	11,778,216	11,816,839	RGD:1624291	RGD
G	Smc1a	structural maintenance of chromosomes 1A			IEA	X	41,503,393	41,547,830	RGD:1600115	InterPro
G	Smc1a	structural maintenance of chromosomes 1A			IEA	X	41,503,393	41,547,830	RGD:1600115	UniProtKB
G	Smc1b	structural maintenance of chromosomes 1B			IEA	7	123,078,896	123,140,078	RGD:1600115	InterPro
G	Smc2	structural maintenance of chromosomes 2			IEA	5	69,561,142	69,607,373	RGD:1600115	InterPro
G	Smc3	structural maintenance of chromosomes 3			IEA	1	259,822,480	259,865,602	RGD:1600115	UniProtKB
G	Smc4	structural maintenance of chromosomes 4			IEA	2	158,987,318	159,015,705	RGD:1600115	InterPro
G	Smug1	single-strand-selective monofunctional uracil-DNA glycosylase 1			IDA	7	142,064,428	142,066,553	RGD:2317001	RGD
G	Ssrp1	structure specific recognition protein 1			IEA	3	68,272,947	68,282,596	RGD:1600115	UniProtKB
G	Taok1	TAO kinase 1			IEA	10	66,503,966	66,584,625	RGD:1600115	UniProtKB
G	Taok3	TAO kinase 3			IEA	12	40,502,499	40,583,816	RGD:1600115	UniProtKB
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			ISO	6	124,095,259	124,162,815	RGD:1624291	RGD
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			ISO	6	124,095,259	124,162,815	RGD:1624291	RGD
G	Tfpt	TCF3 (E2A) fusion partner			IEA	1	63,901,368	63,910,301	RGD:1600115	UniProtKB
G	Tnfaip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)			TAS	10	64,632,189	64,646,879	RGD:1357162	UniProtKB
G	Tp53bp1	tumor protein p53 binding protein 1			ISO	3	107,994,425	108,071,133	RGD:1624291	RGD
G	Tp53bp1	tumor protein p53 binding protein 1			IEA	3	107,994,425	108,071,133	RGD:1600115	ENSEMBL
G	Trim28	tripartite motif-containing 28			ISO	1	72,892,399	72,899,070	RGD:1624291	RGD
G	Trim28	tripartite motif-containing 28			IEA	1	72,892,399	72,899,070	RGD:1600115	ENSEMBL
G	Trip12	thyroid hormone receptor interactor 12			IEA	9	83,961,411	84,085,077	RGD:1600115	UniProtKB
G	Ttc5	tetratricopeptide repeat domain 5			IEA	15	26,749,259	26,766,848	RGD:1600115	UniProtKB
G	Ube2a	ubiquitin-conjugating enzyme E2A			ISO	X	7,981,683	7,992,372	RGD:1624291	RGD
G	Ube2a	ubiquitin-conjugating enzyme E2A			IEA	X	7,981,683	7,992,372	RGD:1600115	ENSEMBL
G	Ube2b	ubiquitin-conjugating enzyme E2B			ISO	10	37,509,322	37,523,900	RGD:1624291	RGD
G	Ube2d3	ubiquitin-conjugating enzyme E2D 3			IEA	2	232,943,214	232,971,022	RGD:1600115	UniProtKB
G	Ube2n	ubiquitin-conjugating enzyme E2N			IEA	7	32,719,959	32,750,002	RGD:1600115	UniProtKB
G	Ube2t	ubiquitin-conjugating enzyme E2T (putative)			ISO	13	47,924,340	47,934,842	RGD:1624291	RGD
G	Ube2t	ubiquitin-conjugating enzyme E2T (putative)			IEA	13	47,924,340	47,934,842	RGD:1600115	ENSEMBL
G	Ubr5	ubiquitin protein ligase E3 component n-recognin 5			IEA	7	73,467,676	73,545,246	RGD:1600115	UniProtKB
G	Uhrf1	ubiquitin-like with PHD and ring finger domains 1			IEA				RGD:1600115	UniProtKB
G	Ung	uracil-DNA glycosylase			TAS	12	43,520,629	43,528,873	RGD:634481	RGD
G	Usp1	ubiquitin specific peptidase 1			IEA	5	119,364,515	119,375,885	RGD:1600115	UniProtKB
G	Usp10	ubiquitin specific peptidase 10			IEA	19	50,202,951	50,244,677	RGD:1600115	UniProtKB
G	Usp28	ubiquitin specific peptidase 28			IEA	8	52,245,642	52,305,922	RGD:1600115	UniProtKB
G	Usp3	ubiquitin specific peptidase 3			IEA	8	70,821,429	70,897,119	RGD:1600115	ENSEMBL
G	Usp3	ubiquitin specific peptidase 3			ISO	8	70,821,429	70,897,119	RGD:1624291	RGD
G	Wrn	Werner syndrome, RecQ helicase-like			IEA	16	62,535,144	62,668,700	RGD:1600115	InterPro
G	Xpa	xeroderma pigmentosum, complementation group A			ISO	5	62,706,719	62,750,771	RGD:1624291	RGD
G	Xpa	xeroderma pigmentosum, complementation group A			ISO	5	62,706,719	62,750,771	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
G	Xrcc1	X-ray repair complementing defective repair in Chinese hamster cells 1			ISO	1	79,834,167	79,860,300	RGD:1624291	RGD
G	Xrcc2	X-ray repair complementing defective repair in Chinese hamster cells 2			ISO	4	4,817,222	4,835,725	RGD:1624291	RGD
G	Xrcc3	X-ray repair complementing defective repair in Chinese hamster cells 3			ISO	6	136,594,276	136,602,069	RGD:1624291	RGD
G	Xrcc3	X-ray repair complementing defective repair in Chinese hamster cells 3			IEA	6	136,594,276	136,602,069	RGD:1600115	ENSEMBL
G	Zranb3	zinc finger, RAN-binding domain containing 3			ISO	13	40,648,221	40,803,738	RGD:1624291	RGD
DNA synthesis involved in DNA repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit		NOT	ISO	X	80,650,454	80,965,833	RGD:1624291	RGD
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit		NOT	ISO	X	80,650,454	80,965,833	RGD:1624291	RGD
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit			ISS	X	80,650,454	80,965,833	RGD:1600115	UniProtKB
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			ISO	1	95,010,719	95,021,686	RGD:1624291	RGD
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			ISO	1	95,010,719	95,021,686	RGD:1624291	RGD
G	Pold1	polymerase (DNA directed), delta 1, catalytic subunit			IEA	1	95,010,719	95,021,686	RGD:1600115	ENSEMBL
G	Pole	polymerase (DNA directed), epsilon, catalytic subunit			ISO	12	46,491,498	46,539,988	RGD:1624291	RGD
G	Pole	polymerase (DNA directed), epsilon, catalytic subunit			IEA	12	46,491,498	46,539,988	RGD:1600115	ENSEMBL
G	Polh	polymerase (DNA directed), eta			IEA	9	10,341,975	10,375,983	RGD:1600115	ENSEMBL
G	Polh	polymerase (DNA directed), eta			ISO	9	10,341,975	10,375,983	RGD:1624291	RGD
G	Sirt1	sirtuin 1			ISO	20	25,675,302	25,686,494	RGD:1624291	RGD
G	Sirt1	sirtuin 1			IEA	20	25,675,302	25,686,494	RGD:1600115	ENSEMBL
G	Wrn	Werner syndrome, RecQ helicase-like			ISO	16	62,535,144	62,668,700	RGD:1624291	RGD
G	Wrnip1	Werner helicase interacting protein 1			ISO	17	37,982,094	38,002,342	RGD:1624291	RGD
G	Wrnip1	Werner helicase interacting protein 1			ISS	17	37,982,094	38,002,342	RGD:1600115	UniProtKB
double-strand break repair via homologous recombination
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Ap5s1	adaptor-related protein complex 5, sigma 1 subunit			IEA	3	118,916,234	118,919,526	RGD:1600115	ENSEMBL
G	Ap5s1	adaptor-related protein complex 5, sigma 1 subunit			ISO	3	118,916,234	118,919,526	RGD:1624291	RGD
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brca2	breast cancer 2, early onset			ISO	12	4,282,952	4,323,693	RGD:1624291	RGD
G	Brca2	breast cancer 2, early onset			ISO	12	4,282,952	4,323,693	RGD:1624291	RGD
G	Brca2	breast cancer 2, early onset			ISS	12	4,282,952	4,323,693	RGD:1600115	UniProtKB
G	Brca2	breast cancer 2, early onset			IBA	12	4,282,952	4,323,693	RGD:1600115	RefGenome
G	Brca2	breast cancer 2, early onset			IEA	12	4,282,952	4,323,693	RGD:1600115	ENSEMBL
G	Brca2	breast cancer 2, early onset			IEA	12	4,282,952	4,323,693	RGD:1600115	ENSEMBL
G	Ercc4	excision repair cross-complementing rodent repair deficiency, complementation group 4			IBA	10	2,144,262	2,177,554	RGD:1600115	RefGenome
G	Ercc4	excision repair cross-complementing rodent repair deficiency, complementation group 4			ISO	10	2,144,262	2,177,554	RGD:1624291	RGD
G	Fan1	FANCD2/FANCI-associated nuclease 1			IEA	1	118,784,938	118,811,928	RGD:1600115	ENSEMBL
G	Fan1	FANCD2/FANCI-associated nuclease 1			ISO	1	118,784,938	118,811,928	RGD:1624291	RGD
G	Fan1	FANCD2/FANCI-associated nuclease 1			ISO	1	118,784,938	118,811,928	RGD:1624291	RGD
G	H2afx	H2A histone family, member X			ISO	8	47,312,609	47,313,938	RGD:1624291	RGD
G	H2afx	H2A histone family, member X			IEA	8	47,312,609	47,313,938	RGD:1600115	ENSEMBL
G	Hus1	HUS1 checkpoint homolog (S. pombe)			ISO	14	89,527,997	89,542,730	RGD:1624291	RGD
G	Hus1	HUS1 checkpoint homolog (S. pombe)			IEA	14	89,527,997	89,542,730	RGD:1600115	ENSEMBL
G	Ino80	INO80 homolog (S. cerevisiae)			ISO	3	105,898,279	105,979,698	RGD:1624291	RGD
G	Kiaa0415	KIAA0415 protein			IEA	12	12,490,951	12,505,621	RGD:1600115	ENSEMBL
G	LOC100360113	mortality factor 4 like 1-like			ISO	8	95,006,476	95,027,439	RGD:1624291	RGD
G	LOC100911267	DNA repair protein RAD51 homolog 1-like			IEA				RGD:1600115	ENSEMBL
G	LOC688631	similar to DNA repair endonuclease XPF (DNA excision repair protein ERCC-4)			IBA	10	890,868	1,227,048	RGD:1600115	RefGenome
G	Mcm8	minichromosome maintenance complex component 8			ISS	3	120,614,429	120,644,673	RGD:1600115	UniProtKB
G	Mcm8	minichromosome maintenance complex component 8			ISO	3	120,614,429	120,644,673	RGD:1624291	RGD
G	Mcmdc1	minichromosome maintenance deficient domain containing 1			ISS				RGD:1600115	UniProtKB
G	Mms22l	MMS22-like, DNA repair protein			ISO	5	39,528,968	39,645,371	RGD:1624291	RGD
G	Mms22l	MMS22-like, DNA repair protein			ISO	5	39,528,968	39,645,371	RGD:1624291	RGD
G	Mms22l	MMS22-like, DNA repair protein			ISO	5	39,528,968	39,645,371	RGD:1624291	RGD
G	Morf4l1	mortality factor 4 like 1			ISS	13	91,235,625	91,237,345	RGD:1600115	UniProtKB
G	Nabp1	nucleic acid binding protein 1			ISO	9	47,194,891	47,201,876	RGD:1624291	RGD
G	Nabp1	nucleic acid binding protein 1			ISS	9	47,194,891	47,201,876	RGD:1600115	UniProtKB
G	Nabp2	nucleic acid binding protein 2			ISO	7	1,693,100	1,698,698	RGD:1624291	RGD
G	Nabp2	nucleic acid binding protein 2			ISS	7	1,693,100	1,698,698	RGD:1600115	UniProtKB
G	Nsmce2	non-SMC element 2, MMS21 homolog (S. cerevisiae)			ISO	7	96,167,635	96,393,594	RGD:1624291	RGD
G	Nsmce2	non-SMC element 2, MMS21 homolog (S. cerevisiae)			ISS	7	96,167,635	96,393,594	RGD:1600115	UniProtKB
G	Palb2	partner and localizer of BRCA2			ISO	1	180,928,710	180,952,518	RGD:1624291	RGD
G	Palb2	partner and localizer of BRCA2			ISO	1	180,928,710	180,952,518	RGD:1624291	RGD
G	Psmd14	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14			ISO	3	43,660,136	43,699,412	RGD:1624291	RGD
G	Psmd14	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14			IEA	3	43,660,136	43,699,412	RGD:1600115	ENSEMBL
G	Rad51	RAD51 homolog (S. cerevisiae)			ISO	3	105,625,265	105,650,392	RGD:1624291	RGD
G	Rad51	RAD51 homolog (S. cerevisiae)			ISO	3	105,625,265	105,650,392	RGD:1624291	RGD
G	Rad51	RAD51 homolog (S. cerevisiae)			ISO	3	105,625,265	105,650,392	RGD:1624291	RGD
G	Rad52	RAD52 homolog (S. cerevisiae)			ISO	4	156,281,973	156,295,238	RGD:1624291	RGD
G	Rad54b	RAD54 homolog B (S. cerevisiae)			ISO	5	25,830,524	25,899,650	RGD:1624291	RGD
G	Rad54l	RAD54 like (S. cerevisiae)			ISO				RGD:1624291	RGD
G	Rad54l	RAD54 like (S. cerevisiae)			IEA				RGD:1600115	ENSEMBL
G	Rbbp8	retinoblastoma binding protein 8			ISS	18	3,266,565	3,333,153	RGD:1600115	UniProtKB
G	Rbbp8	retinoblastoma binding protein 8			ISO	18	3,266,565	3,333,153	RGD:1624291	RGD
G	Rpa1	replication protein A1			ISO	10	62,613,169	62,656,565	RGD:1624291	RGD
G	Rpa1	replication protein A1			IEA	10	62,613,169	62,656,565	RGD:1600115	ENSEMBL
G	Sfr1	SWI5-dependent recombination repair 1			ISO	1	253,079,656	253,105,342	RGD:1624291	RGD
G	Sfr1	SWI5-dependent recombination repair 1			ISO	1	253,079,656	253,105,342	RGD:1624291	RGD
G	Sfr1	SWI5-dependent recombination repair 1			ISS	1	253,079,656	253,105,342	RGD:1600115	UniProtKB
G	Shfm1	split hand/foot malformation (ectrodactyly) type 1			ISO	4	31,316,084	31,336,240	RGD:1624291	RGD
G	Shfm1	split hand/foot malformation (ectrodactyly) type 1			IEA	4	31,316,084	31,336,240	RGD:1600115	ENSEMBL
G	Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			ISO	1	185,843,372	185,848,919	RGD:1624291	RGD
G	Slx4	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)			ISO	10	11,778,216	11,816,839	RGD:1624291	RGD
G	Slx4	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)			ISO	10	11,778,216	11,816,839	RGD:1624291	RGD
G	Smc5	structural maintenance of chromosomes 5			IEA	1	226,494,137	226,566,143	RGD:1600115	ENSEMBL
G	Smc5	structural maintenance of chromosomes 5			ISO	1	226,494,137	226,566,143	RGD:1624291	RGD
G	Smc6	structural maintenance of chromosomes 6			IEA	6	34,710,177	34,763,158	RGD:1600115	InterPro
G	Swi5	SWI5 recombination repair homolog (yeast)			ISO	3	11,402,738	11,411,870	RGD:1624291	RGD
G	Swi5	SWI5 recombination repair homolog (yeast)			ISO	3	11,402,738	11,411,870	RGD:1624291	RGD
G	Swi5	SWI5 recombination repair homolog (yeast)			ISS	3	11,402,738	11,411,870	RGD:1600115	UniProtKB
G	Swsap1	SWIM-type zinc finger 7 associated protein 1			IEA	8	21,058,317	21,060,845	RGD:1600115	ENSEMBL
G	Swsap1	SWIM-type zinc finger 7 associated protein 1			ISO	8	21,058,317	21,060,845	RGD:1624291	RGD
G	Tonsl	tonsoku-like, DNA repair protein			ISS	7	114,674,549	114,689,284	RGD:1600115	UniProtKB
G	Tonsl	tonsoku-like, DNA repair protein			ISO	7	114,674,549	114,689,284	RGD:1624291	RGD
G	Tonsl	tonsoku-like, DNA repair protein			ISO	7	114,674,549	114,689,284	RGD:1624291	RGD
G	Tonsl	tonsoku-like, DNA repair protein			ISO	7	114,674,549	114,689,284	RGD:1624291	RGD
G	Ube2n	ubiquitin-conjugating enzyme E2N			ISO	7	32,719,959	32,750,002	RGD:1624291	RGD
G	Xrcc2	X-ray repair complementing defective repair in Chinese hamster cells 2			ISO	4	4,817,222	4,835,725	RGD:1624291	RGD
G	Xrcc2	X-ray repair complementing defective repair in Chinese hamster cells 2			IEA	4	4,817,222	4,835,725	RGD:1600115	ENSEMBL
G	Yy1	YY1 transcription factor			ISO	6	133,132,419	133,156,686	RGD:1624291	RGD
G	Yy1	YY1 transcription factor			IEA	6	133,132,419	133,156,686	RGD:1600115	ENSEMBL
G	Zfyve26	zinc finger, FYVE domain containing 26			IEA	6	101,999,868	102,065,689	RGD:1600115	ENSEMBL
G	Zfyve26	zinc finger, FYVE domain containing 26			ISO	6	101,999,868	102,065,689	RGD:1624291	RGD
G	Zswim7	zinc finger, SWIM-type containing 7			ISO	10	48,438,718	48,450,809	RGD:1624291	RGD
double-strand break repair via nonhomologous end joining
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Lig1	ligase I, DNA, ATP-dependent			ISO	1	73,728,892	73,767,429	RGD:1624291	RGD
G	Lig3	ligase III, DNA, ATP-dependent			ISO	10	71,000,287	71,021,398	RGD:1624291	RGD
G	Lig3	ligase III, DNA, ATP-dependent			IEA	10	71,000,287	71,021,398	RGD:1600115	ENSEMBL
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			IBA	16	84,881,880	84,888,448	RGD:1600115	RefGenome
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			ISO	8	115,616,396	115,653,471	RGD:1624291	RGD
G	Mlh1	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)			IEA	8	115,616,396	115,653,471	RGD:1600115	ENSEMBL
G	Nhej1	nonhomologous end-joining factor 1			ISO	9	74,309,152	74,408,397	RGD:1624291	RGD
G	Nhej1	nonhomologous end-joining factor 1			ISO	9	74,309,152	74,408,397	RGD:1624291	RGD
G	Nhej1	nonhomologous end-joining factor 1			ISS	9	74,309,152	74,408,397	RGD:1600115	UniProtKB
G	Nhej1	nonhomologous end-joining factor 1			ISS	9	74,309,152	74,408,397		UniProtKB
G	Nsmce2	non-SMC element 2, MMS21 homolog (S. cerevisiae)		NOT	ISO	7	96,167,635	96,393,594	RGD:1624291	RGD
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit			ISO	X	80,650,454	80,965,833	RGD:1624291	RGD
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit			ISS	X	80,650,454	80,965,833	RGD:1600115	UniProtKB
G	Pola1	polymerase (DNA directed), alpha 1, catalytic subunit			IBA	X	80,650,454	80,965,833	RGD:1600115	RefGenome
G	Prkdc	protein kinase, DNA activated, catalytic polypeptide			IEA	11	86,951,420	87,169,229	RGD:1600115	InterPro
G	Psmd14	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14			ISO	3	43,660,136	43,699,412	RGD:1624291	RGD
G	Psmd14	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14			IEA	3	43,660,136	43,699,412	RGD:1600115	ENSEMBL
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISS	20	7,929,802	7,954,697	RGD:1600115	UniProtKB
G	Smc5	structural maintenance of chromosomes 5		NOT	ISO	1	226,494,137	226,566,143	RGD:1624291	RGD
G	Xrcc4	X-ray repair complementing defective repair in Chinese hamster cells 4			ISO	2	19,904,490	20,158,358	RGD:1624291	RGD
G	Xrcc4	X-ray repair complementing defective repair in Chinese hamster cells 4			ISO	2	19,904,490	20,158,358	RGD:1624291	RGD
G	Xrcc4	X-ray repair complementing defective repair in Chinese hamster cells 4			ISO	2	19,904,490	20,158,358	RGD:1624291	RGD
G	Xrcc4	X-ray repair complementing defective repair in Chinese hamster cells 4			IEA	2	19,904,490	20,158,358	RGD:1600115	ENSEMBL
G	Xrcc4	X-ray repair complementing defective repair in Chinese hamster cells 4			IEA	2	19,904,490	20,158,358	RGD:1600115	ENSEMBL
G	Xrcc5	X-ray repair complementing defective repair in Chinese hamster cells 5			ISO	9	71,472,459	71,581,936	RGD:1624291	RGD
G	Xrcc5	X-ray repair complementing defective repair in Chinese hamster cells 5			IEA	9	71,472,459	71,581,936	RGD:1600115	InterPro
G	Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			ISO	7	120,401,944	120,422,923	RGD:1624291	RGD
G	Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			ISO	7	120,401,944	120,422,923	RGD:1624291	RGD
G	Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			IEA	7	120,401,944	120,422,923	RGD:1600115	ENSEMBL
G	Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			IEA	7	120,401,944	120,422,923	RGD:1600115	InterPro
G2 DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Atm	ataxia telangiectasia mutated			ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated			IEA	8	56,894,746	56,996,565	RGD:1600115	ENSEMBL
G	Babam1	BRISC and BRCA1 A complex member 1			ISO	16	18,558,063	18,564,094	RGD:1624291	RGD
G	Babam1	BRISC and BRCA1 A complex member 1			ISO	16	18,558,063	18,564,094	RGD:1624291	RGD
G	Babam1	BRISC and BRCA1 A complex member 1			ISO	16	18,558,063	18,564,094	RGD:1624291	RGD
G	Babam1	BRISC and BRCA1 A complex member 1			ISS	16	18,558,063	18,564,094	RGD:1600115	UniProtKB
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISO				RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISO				RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISO				RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISS				RGD:1600115	UniProtKB
G	Bre	brain and reproductive organ-expressed (TNFRSF1A modulator)			ISO	6	24,406,837	24,791,918	RGD:1624291	RGD
G	Bre	brain and reproductive organ-expressed (TNFRSF1A modulator)			ISS	6	24,406,837	24,791,918	RGD:1600115	UniProtKB
G	Brsk1	BR serine/threonine kinase 1			IEA	1	67,851,020	67,876,360	RGD:1600115	ENSEMBL
G	Brsk1	BR serine/threonine kinase 1			ISO	1	67,851,020	67,876,360	RGD:1624291	RGD
G	Brsk2	BR serine/threonine kinase 2			ISS	1	202,083,095	202,133,268		UniProtKB
G	Cdc14b	cell division cycle 14B			ISO	17	6,371,204	6,454,460	RGD:1624291	RGD
G	Cdc14b	cell division cycle 14B			IEA	17	6,371,204	6,454,460	RGD:1600115	ENSEMBL
G	Chek1	checkpoint kinase 1			IMP	8	37,954,322	37,974,748	RGD:2316109	RGD
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Clspn	claspin			ISO	5	145,930,764	145,965,672	RGD:1624291	RGD
G	Dtl	denticleless E3 ubiquitin protein ligase homolog (Drosophila)			IEA	13	107,603,353	107,640,812	RGD:1600115	ENSEMBL
G	Dtl	denticleless E3 ubiquitin protein ligase homolog (Drosophila)			ISO	13	107,603,353	107,640,812	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			ISO	14	10,080,191	10,094,528	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			ISO	14	10,080,191	10,094,528	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			ISO	14	10,080,191	10,094,528	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			IEA	14	10,080,191	10,094,528	RGD:1600115	ENSEMBL
G	Fam175a	family with sequence similarity 175, member A			ISS	14	10,080,191	10,094,528	RGD:1600115	UniProtKB
G	Fzr1	fizzy/cell division cycle 20 related 1 (Drosophila)			IEA	7	9,816,491	9,829,006	RGD:1600115	ENSEMBL
G	Mapkapk2	mitogen-activated protein kinase-activated protein kinase 2			ISO	13	43,994,943	44,041,504	RGD:1624291	RGD
G	Mbd4	methyl-CpG binding domain protein 4			ISO	4	151,972,272	151,981,633	RGD:1624291	RGD
G	Nek11	NIMA-related kinase 11			IEA	8	110,335,934	110,498,633	RGD:1600115	ENSEMBL
G	Nek11	NIMA-related kinase 11			ISO	8	110,335,934	110,498,633	RGD:1624291	RGD
G	Nek6	NIMA-related kinase 6			ISO	3	18,348,698	18,381,895	RGD:1624291	RGD
G	Nek6	NIMA-related kinase 6			ISS	3	18,348,698	18,381,895	RGD:1600115	UniProtKB
G	Plk1	polo-like kinase 1			ISO	1	181,002,811	181,012,741	RGD:1624291	RGD
G	Plk1	polo-like kinase 1			ISS	1	181,002,811	181,012,741	RGD:1600115	UniProtKB
G	Plk5	polo-like kinase 5			IEA	7	10,858,118	10,866,430	RGD:1600115	ENSEMBL
G	Plk5	polo-like kinase 5			ISO	7	10,858,118	10,866,430	RGD:1624291	RGD
G	Rbbp8	retinoblastoma binding protein 8			ISS	18	3,266,565	3,333,153	RGD:1600115	UniProtKB
G	Rbbp8	retinoblastoma binding protein 8			ISO	18	3,266,565	3,333,153	RGD:1624291	RGD
G	Rint1	RAD50 interactor 1			ISO	4	6,691,863	6,728,969	RGD:1624291	RGD
G	Syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)			ISO	5	153,707,654	153,715,581	RGD:1624291	RGD
G	Taok1	TAO kinase 1			ISO	10	66,503,966	66,584,625	RGD:1624291	RGD
G	Taok1	TAO kinase 1			ISS	10	66,503,966	66,584,625	RGD:1600115	UniProtKB
G	Taok2	TAO kinase 2			ISO	1	186,049,010	186,063,423	RGD:1624291	RGD
G	Taok2	TAO kinase 2			ISS	1	186,049,010	186,063,423	RGD:1600115	UniProtKB
G	Taok3	TAO kinase 3			IEA	12	40,502,499	40,583,816	RGD:1600115	ENSEMBL
G	Taok3	TAO kinase 3			ISO	12	40,502,499	40,583,816	RGD:1624291	RGD
G	Taok3	TAO kinase 3			ISS	12	40,502,499	40,583,816	RGD:1600115	UniProtKB
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISS	17	15,579,709	15,644,888	RGD:1600115	UniProtKB
intra-S DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Mre11a	MRE11 meiotic recombination 11 homolog A (S. cerevisiae)			ISO	8	11,588,409	11,632,483	RGD:1624291	RGD
G	Mre11a	MRE11 meiotic recombination 11 homolog A (S. cerevisiae)			ISO	8	11,588,409	11,632,483	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			ISO	6	11,199,906	11,258,350	RGD:1624291	RGD
G	Msh2	mutS homolog 2 (E. coli)			IEA	6	11,199,906	11,258,350	RGD:1600115	ENSEMBL
G	Msh2	mutS homolog 2 (E. coli)			IBA	6	11,199,906	11,258,350	RGD:1600115	RefGenome
G	Nek11	NIMA-related kinase 11			IEA	8	110,335,934	110,498,633	RGD:1600115	ENSEMBL
G	Nek11	NIMA-related kinase 11			ISO	8	110,335,934	110,498,633	RGD:1624291	RGD
G	Rad9a	RAD9 homolog A (S. pombe)			ISO	1	206,778,534	206,785,230	RGD:1624291	RGD
G	Tipin-ps1	timeless interacting protein, pseudogene 1			ISS				RGD:1600115	UniProtKB
G	Tipinl1	TIMELESS interacting protein like 1			ISO	9	112,832,275	112,833,123	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			IEA	4	125,672,674	125,699,925	RGD:1600115	ENSEMBL
meiotic DNA repair synthesis
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Spata22	spermatogenesis associated 22			ISO	10	60,205,533	60,221,778	RGD:1624291	RGD
mitotic DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Zfp830	zinc finger protein 830			ISO	10	70,983,767	70,985,231	RGD:1624291	RGD
mitotic G1 DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Ccnd1	cyclin D1			ISO	1	205,357,235	205,366,757	RGD:1624291	RGD
G	Ccnd1	cyclin D1			ISS	1	205,357,235	205,366,757	RGD:1600115	UniProtKB
G	Dgkz	diacylglycerol kinase zeta			ISO	3	76,312,721	76,342,603	RGD:1624291	RGD
G	Dgkz	diacylglycerol kinase zeta			IEA	3	76,312,721	76,342,603	RGD:1600115	ENSEMBL
G	Fbxo31	F-box protein 31			ISS	19	51,836,918	51,837,223	RGD:1600115	UniProtKB
G	Fbxo31	F-box protein 31			ISO	19	51,836,918	51,837,223	RGD:1624291	RGD
G	Fbxo31	F-box protein 31			IEA	19	51,836,918	51,837,223	RGD:1600115	InterPro
G	LOC498414	LRRGT00197			IBA				RGD:1600115	RefGenome
G	Ptprv	protein tyrosine phosphatase, receptor type, V			ISO	13	48,070,488	48,090,682	RGD:1624291	RGD
G	Rfwd3	ring finger and WD repeat domain 3			ISO	19	41,190,144	41,222,888	RGD:1624291	RGD
G	Rps27l	ribosomal protein S27-like			IEA				RGD:1600115	ENSEMBL
G	Rps27l	ribosomal protein S27-like			ISO				RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53			IBA	10	56,399,721	56,411,150	RGD:1600115	RefGenome
G	Tp73	tumor protein p73			IBA	5	170,848,979	171,078,739	RGD:1600115	RefGenome
mitotic G2 DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Ccng1	cyclin G1			IMP	10	25,776,380	25,782,754	RGD:2316029	RGD
G	Cdk1	cyclin-dependent kinase 1			ISO	20	20,018,044	20,044,030	RGD:1624291	RGD
G	Cdk1	cyclin-dependent kinase 1			IEA	20	20,018,044	20,044,030	RGD:1600115	ENSEMBL
G	Foxo4	forkhead box O4			ISO	X	89,332,278	89,338,835	RGD:1624291	RGD
G	Foxo4	forkhead box O4			IBA	X	89,332,278	89,338,835	RGD:1600115	RefGenome
G	Hmga2	high mobility group AT-hook 2			ISO	7	59,638,555	59,753,791	RGD:1624291	RGD
G	Hmga2	high mobility group AT-hook 2			ISS	7	59,638,555	59,753,791	RGD:1600115	UniProtKB
G	Ier3	immediate early response 3			ISO	20	3,076,568	3,077,772	RGD:1624291	RGD
G	Mre11a	MRE11 meiotic recombination 11 homolog A (S. cerevisiae)			ISO	8	11,588,409	11,632,483	RGD:1624291	RGD
G	Nbn	nibrin			ISO	5	30,541,610	30,576,168	RGD:1624291	RGD
G	Nbn	nibrin			ISO	5	30,541,610	30,576,168	RGD:1624291	RGD
G	Nbn	nibrin			IEA	5	30,541,610	30,576,168	RGD:1600115	ENSEMBL
G	Nbn	nibrin			ISS	5	30,541,610	30,576,168	RGD:1600115	UniProtKB
negative regulation of DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Wnt1	wingless-type MMTV integration site family, member 1			IEA	7	137,557,836	137,561,883	RGD:1600115	ENSEMBL
negative regulation of DNA repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Rps3	ribosomal protein S3			ISO	1	156,811,470	156,816,770	RGD:1624291	RGD
negative regulation of double-strand break repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Otub1	OTU domain, ubiquitin aldehyde binding 1			ISS	1	209,871,581	209,879,518	RGD:1600115	UniProtKB
G	Otub1	OTU domain, ubiquitin aldehyde binding 1			ISO	1	209,871,581	209,879,518	RGD:1624291	RGD
G	Rnf169	ring finger protein 169			ISO	1	157,289,186	157,313,978	RGD:1624291	RGD
G	Rnf169	ring finger protein 169			ISO	1	157,289,186	157,313,978	RGD:1624291	RGD
G	Rnf169	ring finger protein 169			ISO	1	157,289,186	157,313,978	RGD:1624291	RGD
G	Trip12	thyroid hormone receptor interactor 12			ISS	9	83,961,411	84,085,077	RGD:1600115	UniProtKB
G	Trip12	thyroid hormone receptor interactor 12			ISO	9	83,961,411	84,085,077	RGD:1624291	RGD
G	Twist1	twist basic helix-loop-helix transcription factor 1			ISO	6	52,605,869	52,607,863	RGD:1624291	RGD
G	Twist1	twist basic helix-loop-helix transcription factor 1			IEA	6	52,605,869	52,607,863	RGD:1600115	ENSEMBL
G	Ubr5	ubiquitin protein ligase E3 component n-recognin 5			ISO	7	73,467,676	73,545,246	RGD:1624291	RGD
G	Ubr5	ubiquitin protein ligase E3 component n-recognin 5			ISS	7	73,467,676	73,545,246	RGD:1600115	UniProtKB
negative regulation of double-strand break repair via homologous recombination
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Parpbp	PARP1 binding protein			ISO	7	24,777,634	24,847,083	RGD:1624291	RGD
G	Parpbp	PARP1 binding protein			ISS	7	24,777,634	24,847,083	RGD:1600115	UniProtKB
negative regulation of double-strand break repair via nonhomologous end joining
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Hmga2	high mobility group AT-hook 2			ISO	7	59,638,555	59,753,791	RGD:1624291	RGD
G	Hmga2	high mobility group AT-hook 2			ISS	7	59,638,555	59,753,791	RGD:1600115	UniProtKB
nucleotide-excision repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Brca2	breast cancer 2, early onset			ISO	12	4,282,952	4,323,693	RGD:1624291	RGD
G	Cetn2	centrin, EF-hand protein, 2			ISO	X	158,917,650	158,923,210	RGD:1624291	RGD
G	Dclre1a	DNA cross-link repair 1A			ISO	1	262,822,176	262,840,988	RGD:1624291	RGD
G	Dclre1a	DNA cross-link repair 1A			IEA	1	262,822,176	262,840,988	RGD:1600115	ENSEMBL
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1			ISO	1	78,711,249	78,722,474	RGD:1624291	RGD
G	Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2			ISO				RGD:1624291	RGD
G	Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2			ISO				RGD:1624291	RGD
G	Ercc3	excision repair cross-complementing rodent repair deficiency, complementation group 3			ISO	18	24,684,912	24,716,143	RGD:1624291	RGD
G	Ercc5	excision repair cross-complementing rodent repair deficiency, complementation group 5			ISO	9	43,248,023	43,293,196	RGD:1624291	RGD
G	Fancc	Fanconi anemia, complementation group C			ISO	17	7,254,528	7,341,500	RGD:1624291	RGD
G	Fancc	Fanconi anemia, complementation group C			IEA	17	7,254,528	7,341,500	RGD:1600115	ENSEMBL
G	Gtf2h1	general transcription factor IIH, polypeptide 1			IEA	1	97,352,251	97,380,298	RGD:1600115	InterPro
G	Gtf2h2	general transcription factor IIH, polypeptide 2			IEA	2	31,284,753	31,312,475	RGD:1600115	InterPro
G	Gtf2h5	general transcription factor IIH, polypeptide 5			IEA	1	40,858,997	40,865,571	RGD:1600115	InterPro
G	Lig4	ligase IV, DNA, ATP-dependent			IBA	16	84,881,880	84,888,448	RGD:1600115	RefGenome
G	Neil2	nei endonuclease VIII-like 2 (E. coli)			IEA	15	42,458,573	42,468,055	RGD:1600115	InterPro
G	Neil3	nei endonuclease VIII-like 3 (E. coli)			IEA	16	41,232,815	41,296,032	RGD:1600115	InterPro
G	Rad23a	RAD23 homolog A (S. cerevisiae)			ISO	19	24,971,070	24,976,901	RGD:1624291	RGD
G	Rad23b	RAD23 homolog B (S. cerevisiae)			ISO	5	73,256,542	73,294,296	RGD:1624291	RGD
G	Rad23b	RAD23 homolog B (S. cerevisiae)			ISO	5	73,256,542	73,294,296	RGD:1624291	RGD
G	Tp53	tumor protein p53			ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Xpa	xeroderma pigmentosum, complementation group A			ISO	5	62,706,719	62,750,771	RGD:1624291	RGD
G	Xpa	xeroderma pigmentosum, complementation group A			ISO	5	62,706,719	62,750,771	RGD:1624291	RGD
G	Xpa	xeroderma pigmentosum, complementation group A			IEA	5	62,706,719	62,750,771	RGD:1600115	ENSEMBL
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
G	Xpc	xeroderma pigmentosum, complementation group C			ISO	4	125,672,674	125,699,925	RGD:1624291	RGD
positive regulation of DNA repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)			ISO	1	163,282,918	163,299,333	RGD:1624291	RGD
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)			IEA	1	163,282,918	163,299,333	RGD:1600115	ENSEMBL
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)			IMP	1	163,282,918	163,299,333		UniProtKB
G	Apex1	APEX nuclease (multifunctional DNA repair enzyme) 1			ISO	15	26,904,124	26,906,224	RGD:1624291	RGD
G	Apex1	APEX nuclease (multifunctional DNA repair enzyme) 1			ISS	15	26,904,124	26,906,224	RGD:1600115	UniProtKB
G	Babam1	BRISC and BRCA1 A complex member 1			ISO	16	18,558,063	18,564,094	RGD:1624291	RGD
G	Babam1	BRISC and BRCA1 A complex member 1			ISO	16	18,558,063	18,564,094	RGD:1624291	RGD
G	Babam1	BRISC and BRCA1 A complex member 1			ISO	16	18,558,063	18,564,094	RGD:1624291	RGD
G	Babam1	BRISC and BRCA1 A complex member 1			ISS	16	18,558,063	18,564,094	RGD:1600115	UniProtKB
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brca1	breast cancer 1, early onset			ISO	10	90,513,630	90,572,676	RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISO				RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISO				RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISO				RGD:1624291	RGD
G	Brcc3	BRCA1/BRCA2-containing complex, subunit 3			ISS				RGD:1600115	UniProtKB
G	Bre	brain and reproductive organ-expressed (TNFRSF1A modulator)			ISO	6	24,406,837	24,791,918	RGD:1624291	RGD
G	Bre	brain and reproductive organ-expressed (TNFRSF1A modulator)			ISS	6	24,406,837	24,791,918	RGD:1600115	UniProtKB
G	Cebpg	CCAAT/enhancer binding protein (C/EBP), gamma			ISO	1	87,552,695	87,559,447	RGD:1624291	RGD
G	Cebpg	CCAAT/enhancer binding protein (C/EBP), gamma			ISS	1	87,552,695	87,559,447		UniProtKB
G	Egfr	epidermal growth factor receptor			ISO	14	97,617,358	97,788,211	RGD:1624291	RGD
G	Egfr	epidermal growth factor receptor			IEA	14	97,617,358	97,788,211	RGD:1600115	ENSEMBL
G	Ercc8	excision repair cross-complementing rodent repair deficiency, complementation group 8			IEA	2	39,382,976	39,420,764	RGD:1600115	ENSEMBL
G	Eya1	eyes absent homolog 1 (Drosophila)			ISO	5	4,132,825	4,276,837	RGD:1624291	RGD
G	Eya3	eyes absent homolog 3 (Drosophila)			IEA	5	152,427,552	152,507,813	RGD:1600115	ENSEMBL
G	Eya3	eyes absent homolog 3 (Drosophila)			ISO	5	152,427,552	152,507,813	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			ISO	14	10,080,191	10,094,528	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			ISO	14	10,080,191	10,094,528	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			ISO	14	10,080,191	10,094,528	RGD:1624291	RGD
G	Fam175a	family with sequence similarity 175, member A			IEA	14	10,080,191	10,094,528	RGD:1600115	ENSEMBL
G	Fam175a	family with sequence similarity 175, member A			ISS	14	10,080,191	10,094,528	RGD:1600115	UniProtKB
G	Fgf10	fibroblast growth factor 10			ISO	2	50,866,799	50,940,319	RGD:1624291	RGD
G	Fgf10	fibroblast growth factor 10			IEA	2	50,866,799	50,940,319	RGD:1600115	ENSEMBL
G	Mgmt	O-6-methylguanine-DNA methyltransferase			IDA	1	196,629,366	196,866,937	RGD:729332	RGD
G	Parg	poly (ADP-ribose) glycohydrolase			IMP	16	7,689,492	7,798,104	RGD:2316739	RGD
G	Pnp	purine nucleoside phosphorylase			ISO	15	26,929,784	26,937,434	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISS	11	70,304,917	70,328,010	RGD:1600115	UniProtKB
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase			ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase			ISS	20	7,929,802	7,954,697	RGD:1600115	UniProtKB
G	Sirt1	sirtuin 1			ISO	20	25,675,302	25,686,494	RGD:1624291	RGD
G	Sirt1	sirtuin 1			IEA	20	25,675,302	25,686,494	RGD:1600115	ENSEMBL
G	Tmem161a	transmembrane protein 161A			IEA	16	19,721,497	19,731,098	RGD:1600115	ENSEMBL
G	Tmem161a	transmembrane protein 161A			ISO	16	19,721,497	19,731,098	RGD:1624291	RGD
G	Trim28	tripartite motif-containing 28			ISO	1	72,892,399	72,899,070	RGD:1624291	RGD
G	Trim28	tripartite motif-containing 28			IEA	1	72,892,399	72,899,070	RGD:1600115	ENSEMBL
G	Ube2n	ubiquitin-conjugating enzyme E2N			ISO	7	32,719,959	32,750,002	RGD:1624291	RGD
G	Ube2v2	ubiquitin-conjugating enzyme E2 variant 2			IMP	11	87,215,842	87,249,726	RGD:1299567	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISO	17	15,579,709	15,644,888	RGD:1624291	RGD
G	Uimc1	ubiquitin interaction motif containing 1			ISS	17	15,579,709	15,644,888	RGD:1600115	UniProtKB
positive regulation of double-strand break repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Foxm1	forkhead box M1			ISO	4	165,383,666	165,394,688	RGD:1624291	RGD
G	Foxm1	forkhead box M1			IEA	4	165,383,666	165,394,688	RGD:1600115	ENSEMBL
G	Foxm1	forkhead box M1			ISO	4	165,383,666	165,394,688	RGD:1624291	RGD
G	Nudt16	nudix (nucleoside diphosphate linked moiety X)-type motif 16			ISO	8	110,199,789	110,201,844	RGD:1624291	RGD
positive regulation of mismatch repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Prkcg	protein kinase C, gamma			ISO	1	64,145,749	64,172,712	RGD:1624291	RGD
G	Prkcg	protein kinase C, gamma			IEA	1	64,145,749	64,172,712	RGD:1600115	ENSEMBL
recombinational repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	MGC94282	similar to 5930416I19Rik protein			IEA	4	165,378,057	165,383,443	RGD:1600115	ENSEMBL
regulation of DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Fem1b	fem-1 homolog b (C. elegans)			ISS	8	66,948,714	66,961,986	RGD:1600115	UniProtKB
G	Fem1b	fem-1 homolog b (C. elegans)			ISO	8	66,948,714	66,961,986	RGD:1624291	RGD
regulation of DNA repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Cdk9	cyclin-dependent kinase 9			ISO	3	11,672,861	11,677,709	RGD:1624291	RGD
G	Cdk9	cyclin-dependent kinase 9			IEA	3	11,672,861	11,677,709	RGD:1600115	ENSEMBL
G	Ier3	immediate early response 3			ISO	20	3,076,568	3,077,772	RGD:1624291	RGD
G	Usp1	ubiquitin specific peptidase 1			ISO	5	119,364,515	119,375,885	RGD:1624291	RGD
G	Usp1	ubiquitin specific peptidase 1			ISS	5	119,364,515	119,375,885	RGD:1600115	UniProtKB
regulation of double-strand break repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Dek	DEK oncogene			ISO	17	23,633,551	23,655,507	RGD:1624291	RGD
G	Pml	promyelocytic leukemia			ISO	8	62,020,438	62,051,927	RGD:1624291	RGD
regulation of double-strand break repair via homologous recombination
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Chek1	checkpoint kinase 1			ISO	8	37,954,322	37,974,748	RGD:1624291	RGD
G	Chek1	checkpoint kinase 1			ISS	8	37,954,322	37,974,748	RGD:1600115	UniProtKB
G	Ppp4c	protein phosphatase 4, catalytic subunit			ISO	1	185,961,286	185,967,851	RGD:1624291	RGD
G	Ppp4c	protein phosphatase 4, catalytic subunit			IEA	1	185,961,286	185,967,851	RGD:1600115	ENSEMBL
G	Ppp4c	protein phosphatase 4, catalytic subunit			ISS	1	185,961,286	185,967,851	RGD:1600115	UniProtKB
G	Ppp4r2	protein phosphatase 4, regulatory subunit 2			ISO	4	135,720,581	135,761,507	RGD:1624291	RGD
G	Rpa2	replication protein A2			ISO	5	152,369,550	152,380,370	RGD:1624291	RGD
G	Rpa2	replication protein A2			ISS	5	152,369,550	152,380,370	RGD:1600115	UniProtKB
G	Rtel1	regulator of telomere elongation helicase 1			ISO	3	170,461,613	170,496,959	RGD:1624291	RGD
G	Rtel1	regulator of telomere elongation helicase 1			ISS	3	170,461,613	170,496,959	RGD:1600115	UniProtKB
G	Sirt6	sirtuin 6			ISO	7	9,555,269	9,560,695	RGD:1624291	RGD
G	Sirt6	sirtuin 6			IEA	7	9,555,269	9,560,695	RGD:1600115	ENSEMBL
G	Terf2ip	telomeric repeat binding factor 2, interacting protein			ISO	19	41,946,621	41,954,910	RGD:1624291	RGD
G	Terf2ip	telomeric repeat binding factor 2, interacting protein			ISS	19	41,946,621	41,954,910	RGD:1600115	UniProtKB
G	Tex15	testis expressed 15			ISO	16	62,371,381	62,385,448	RGD:1624291	RGD
G	Tex15	testis expressed 15			IEA	16	62,371,381	62,385,448	RGD:1600115	ENSEMBL
regulation of double-strand break repair via nonhomologous end joining
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Dek	DEK oncogene			ISO	17	23,633,551	23,655,507	RGD:1624291	RGD
G	Dek	DEK oncogene			IEA	17	23,633,551	23,655,507	RGD:1600115	ENSEMBL
regulation of mismatch repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Axin2	axin 2			IEA	10	98,294,466	98,321,830	RGD:1600115	ENSEMBL
G	Axin2	axin 2			ISO	10	98,294,466	98,321,830	RGD:1624291	RGD
signal transduction involved in intra-S DNA damage checkpoint
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Chek2	checkpoint kinase 2			ISO	12	45,933,900	45,965,427	RGD:1624291	RGD
G	Chek2	checkpoint kinase 2			IEA	12	45,933,900	45,965,427	RGD:1600115	ENSEMBL
single strand break repair
	Symbol	Object Name	GBrowse	Qualifiers	Evidence	Chr	Start	Stop	Reference	Source
G	Aplf	aprataxin and PNKP like factor			ISO	4	121,796,926	121,849,410	RGD:1624291	RGD
G	Aptx	aprataxin			ISO	5	58,060,210	58,081,165	RGD:1624291	RGD
G	Aptx	aprataxin			ISO	5	58,060,210	58,081,165	RGD:1624291	RGD
G	Aptx	aprataxin			ISO	5	58,060,210	58,081,165	RGD:1624291	RGD
G	Aptx	aprataxin			IEA	5	58,060,210	58,081,165	RGD:1600115	ENSEMBL
G	Aptx	aprataxin			IEA	5	58,060,210	58,081,165	RGD:1600115	ENSEMBL
G	Lig4	ligase IV, DNA, ATP-dependent			ISO	16	84,881,880	84,888,448	RGD:1624291	RGD
G	Lig4	ligase IV, DNA, ATP-dependent			IEA	16	84,881,880	84,888,448	RGD:1600115	ENSEMBL
G	Sirt1	sirtuin 1			IEA	20	25,675,302	25,686,494	RGD:1600115	ENSEMBL
G	Sirt1	sirtuin 1			ISO	20	25,675,302	25,686,494	RGD:1624291	RGD
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			ISO	6	124,095,259	124,162,815	RGD:1624291	RGD
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			ISO	6	124,095,259	124,162,815	RGD:1624291	RGD
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			ISO	6	124,095,259	124,162,815	RGD:1624291	RGD
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			ISO	6	124,095,259	124,162,815	RGD:1624291	RGD
G	Tdp1	tyrosyl-DNA phosphodiesterase 1			IEA	6	124,095,259	124,162,815	RGD:1600115	ENSEMBL
G	Tnp1	transition protein 1			ISO	9	72,397,750	72,398,359	RGD:1624291	RGD
G	Tnp1	transition protein 1			ISS	9	72,397,750	72,398,359	RGD:1600115	UniProtKB
G	Trpc2	transient receptor potential cation channel, subfamily C, member 2			IEA	1	159,542,801	159,576,294	RGD:1600115	InterPro
G	Xrcc1	X-ray repair complementing defective repair in Chinese hamster cells 1			IEA	1	79,834,167	79,860,300	RGD:1600115	InterPro

Term paths to the root

Path 1
Term	Annotations
biological_process	135981
response to stimulus	34050
response to stress	7466
cellular response to stress	3149
response to DNA damage stimulus	1645
DNA damage checkpoint +	167
DNA damage induced protein phosphorylation	8
DNA damage response, detection of DNA damage +	7
DNA repair +	919
histone H3-K56 acetylation in response to DNA damage	0
histone H4 acetylation involved in response to DNA damage stimulus +	0
intrinsic apoptotic signaling pathway in response to DNA damage +	95
negative regulation of response to DNA damage stimulus +	42
positive regulation of response to DNA damage stimulus +	98
regulation of response to DNA damage stimulus +	180
replication fork processing +	13
signal transduction in response to DNA damage +	132