Mdm4 (MDM4 regulator of p53) - Rat Genome Database

Name: Mdm4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Mdm4 (MDM4 regulator of p53) Rattus norvegicus

Analyze

Symbol:

Mdm4

Name:

MDM4 regulator of p53

RGD ID:

1309306

Description:

Predicted to enable enzyme binding activity and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; negative regulation of nitrogen compound metabolic process; and protein stabilization. Predicted to act upstream of or within heart development; positive regulation of cell population proliferation; and regulation of heart rate. Predicted to be located in nucleoplasm. Predicted to be part of transcription repressor complex. Orthologous to human MDM4 (MDM4 regulator of p53); PARTICIPATES IN altered p53 signaling pathway; p53 signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

double minute 4 homolog; double minute 4 protein; LOC304798; mdm2-like p53-binding protein; Mdm4 p53 binding protein homolog; Mdm4 p53 binding protein homolog (mouse); MDM4, p53 regulator; p53-binding protein Mdm4; protein Mdmx; transformed mouse 3T3 cell double minute 4

RGD Orthologs

Alliance Genes

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MDM4 (MDM4 regulator of p53)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mdm4 (transformed mouse 3T3 cell double minute 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mdm4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MDM4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MDM4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mdm4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MDM4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MDM4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mdm4 (MDM4 regulator of p53)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FLT3 (fms related receptor tyrosine kinase 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MDM4 (MDM4 regulator of p53)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mdm4 (transformed mouse 3T3 cell double minute 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mdm4 (MDM4 regulator of p53)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mdm4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,922,236 - 47,068,241 (-)	NCBI		GRCr8
mRatBN7.2	13	44,432,596 - 44,516,165 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	44,406,213 - 44,474,226 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	47,045,798 - 47,081,175 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	48,333,906 - 48,369,277 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,594,488 - 45,629,855 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	49,786,776 - 49,828,780 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	49,792,794 - 49,828,720 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	54,857,103 - 54,899,109 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	45,895,832 - 45,931,421 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	45,909,875 - 45,945,464 (-)	NCBI
Celera	13	44,772,868 - 44,808,247 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

autistic disorder (ISO)

Bone Marrow Failure Syndrome 6 (ISO)

Breast Neoplasms (ISO)

dilated cardiomyopathy (ISS)

familial adult myoclonic epilepsy 5 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

glioblastoma (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

parathyroid carcinoma (ISO)

pneumoconiosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-naringenin (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

5'-S-methyl-5'-thioadenosine (ISO)

5-fluorouracil (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

Benzo[ghi]perylene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

capecitabine (ISO)

carbon nanotube (ISO)

carmustine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

daunorubicin (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dieldrin (EXP)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formononetin (EXP)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

lead(0) (ISO)

leflunomide (ISO)

leptomycin B (ISO)

maneb (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

nickel dichloride (EXP,ISO)

ozone (ISO)

p-menthan-3-ol (ISO)

paraquat (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

platycodin D (ISO)

ruthenium atom (ISO)

SB 431542 (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

atrial septum development (ISO)

atrioventricular valve morphogenesis (ISO)

biological_process (ND)

cellular response to hypoxia (IEA,ISO)

DNA damage response, signal transduction by p53 class mediator (IEA,ISO)

endocardial cushion morphogenesis (ISO)

heart valve development (ISO)

negative regulation of apoptotic process (IEA)

negative regulation of DNA-templated transcription (ISO)

negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

negative regulation of protein catabolic process (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of cell population proliferation (ISO)

protein stabilization (IEA,ISO)

protein ubiquitination (IBA,IEA)

protein-containing complex assembly (IEA,ISO)

regulation of biological quality (IEA)

regulation of cell cycle (IEA)

regulation of heart rate (ISO)

ventricular septum development (ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA)

transcription repressor complex (IEA,ISO)

Molecular Function

enzyme binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

ubiquitin-protein transferase activity (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

altered p53 signaling pathway (ISO)

p53 signaling pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Cell cycle checkpoint abnormalities during dementia: A plausible association with the loss of protection against oxidative stress in Alzheimer's disease .	Katsel P, etal., PLoS One. 2013 Jul 5;8(7):e68361. doi: 10.1371/journal.pone.0068361. Print 2013.
4.	Modes of p53 regulation.	Kruse JP and Gu W, Cell. 2009 May 15;137(4):609-22. doi: 10.1016/j.cell.2009.04.050.
5.	The complexity of p53 stabilization and activation.	Lavin MF and Gueven N, Cell Death Differ. 2006 Jun;13(6):941-50.
6.	Molecular pathways: targeting Mdm2 and Mdm4 in cancer therapy.	Li Q and Lozano G, Clin Cancer Res. 2013 Jan 1;19(1):34-41. doi: 10.1158/1078-0432.CCR-12-0053. Epub 2012 Dec 21.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10.	GOA pipeline	RGD automated data pipeline
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:9226370	PMID:10608892	PMID:12101245	PMID:12477932	PMID:14660608	PMID:14712235	PMID:19838211	PMID:20810912	PMID:22821713	PMID:30537038

Genomics

Comparative Map Data

Mdm4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,922,236 - 47,068,241 (-)	NCBI		GRCr8
mRatBN7.2	13	44,432,596 - 44,516,165 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	44,406,213 - 44,474,226 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	47,045,798 - 47,081,175 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	48,333,906 - 48,369,277 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,594,488 - 45,629,855 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	49,786,776 - 49,828,780 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	49,792,794 - 49,828,720 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	54,857,103 - 54,899,109 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	45,895,832 - 45,931,421 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	45,909,875 - 45,945,464 (-)	NCBI
Celera	13	44,772,868 - 44,808,247 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

MDM4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	204,516,406 - 204,558,120 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	204,516,379 - 204,558,120 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	204,485,534 - 204,527,248 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	202,752,134 - 202,786,349 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	201,217,222 - 201,409,318	NCBI
Celera	1	177,620,715 - 177,662,398 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	175,650,570 - 175,692,491 (+)	NCBI		HuRef
CHM1_1	1	205,908,863 - 205,950,615 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	203,780,802 - 203,822,528 (+)	NCBI		T2T-CHM13v2.0

Mdm4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	132,913,843 - 132,958,325 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	132,887,222 - 132,958,299 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	132,986,105 - 133,030,587 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	132,959,484 - 133,030,561 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	134,886,422 - 134,921,925 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	134,817,391 - 134,852,894 (-)	NCBI		MGSCv36	mm8
Celera	1	135,598,842 - 135,634,680 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.75	NCBI

Mdm4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	40,346,588 - 40,387,977 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	40,346,617 - 40,387,977 (+)	NCBI	ChiLan1.0	ChiLan1.0

MDM4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	44,819,760 - 44,863,970 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	44,784,970 - 44,829,166 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	180,117,364 - 180,151,144 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	184,406,124 - 184,439,344 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	184,406,124 - 184,439,344 (+)	Ensembl	panpan1.1		panPan2

MDM4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	1,055,978 - 1,122,348 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	1,056,109 - 1,107,166 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	1,150,709 - 1,216,877 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	1,051,218 - 1,117,506 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	1,051,234 - 1,100,650 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	1,047,689 - 1,103,345 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	1,439,250 - 1,505,212 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	1,639,529 - 1,705,937 (+)	NCBI		UU_Cfam_GSD_1.0

Mdm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	71,034,877 - 71,064,872 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	268,151 - 299,494 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	268,151 - 299,494 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MDM4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	65,175,377 - 65,219,742 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	65,175,488 - 65,219,747 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	71,509,117 - 71,547,900 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MDM4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	24,797,238 - 24,843,034 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	24,797,278 - 24,833,485 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	25,553,750 - 25,603,137 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mdm4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	6,486,333 - 6,522,801 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	6,480,785 - 6,522,149 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mdm4
369 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	36
Interacting mature miRNAs:	39
Transcripts:	ENSRNOT00000012984
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	5994668	44807491	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	9313465	54313465	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	9313465	54313465	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	11929449	45417941	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	11929449	46193066	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	14915655	59915655	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	15158722	60158722	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	17694436	53050594	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	22301875	67301875	Rat
70170	Eae14	Experimental allergic encephalomyelitis QTL 14		0.0024	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	23203448	68203448	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	23692969	68692969	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	23692969	68692969	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	31241331	58363171	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	41184022	45417941	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	43437904	47841255	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	43720770	62022792	Rat

Markers in Region

BE116762

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	44,471,057 - 44,471,207 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	49,825,569 - 49,825,718	NCBI	Rnor6.0
Rnor_5.0	13	54,895,896 - 54,896,045	UniSTS	Rnor5.0
RGSC_v3.4	13	45,928,270 - 45,928,419	UniSTS	RGSC3.4
Celera	13	44,805,097 - 44,805,246	UniSTS
RH 3.4 Map	13	114.4	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	40	50	34	19	34	8	9	74	35	41	11	8
Low		3	7	7		7		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000012984 ⟹ ENSRNOP00000012984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	44,438,617 - 44,474,226 (-)	Ensembl
Rnor_6.0 Ensembl	13	49,792,794 - 49,828,720 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112527 ⟹ ENSRNOP00000084671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	44,438,617 - 44,474,226 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116113 ⟹ ENSRNOP00000076729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	44,406,213 - 44,474,226 (-)	Ensembl

RefSeq Acc Id:

NM_001012026 ⟹ NP_001012026

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,990,699 - 47,026,287 (-)	NCBI
mRatBN7.2	13	44,438,615 - 44,474,209 (-)	NCBI
Rnor_6.0	13	49,792,793 - 49,828,720 (-)	NCBI
Rnor_5.0	13	54,857,103 - 54,899,109 (-)	NCBI
RGSC_v3.4	13	45,895,832 - 45,931,421 (-)	RGD
Celera	13	44,772,868 - 44,808,247 (-)	RGD

Sequence:

show sequence

GCTGTGCAGGCCTTAGGACCTTCAACTGCCACCCCTCCCCCAGCTAGGAGGGGGGAGCGACTCA
TGGAGCGGCCGTAAGTTGCTAACTGAGTTTGGAATCTTCACTGCCAAAATGACATCACATTCCA
CCTCTGCCCAGTGTTCAGCATCTGACAGTGCTTGCAGAATTTCTTCGGAACAAATCAATCAGCA
GGTACGACCAAAACTGCAGCTTCTCAAGATTTTGCAAGCAGCAGGTGCTCAGGGGGAAGTTTTC
ACCATGAAAGAGGTAATGCACTATCTAGGCCAGTATATAATGGTGAAGCAGCTCTATGATCAAC
AGGAGCAACATCTGGTGTACTGTGGTGGAGACCTTTTGGGAGATCTACTTGGATGTCAGAGCTT
TTCTGTGAAAGATCCAAGCCCTCTGTATGACATGCTAAGAAAGAACCTTGTTACGTCAGCCTCT
GTTAACACAGATGCTGCTCAGACTCTCGCTCTCGCACAGGATCACACTATGGATATTCCAAGTC
AAGACCGACTGAAGCACGGTGCAACAGAGTGCTCCAACCCCAGAAAAAGAACTGAAGAAGATGA
TACTCACACACTGCCTACCTCACGACGTAAATGCAGAGATTCCAGAGCAGATGAAGACTTGATA
GAACATTTATCTCAAGATGAGACATCTAGGCTTGATCTTGATTTTGAGGAGTGGGATGTTGCTG
GCCTGCCTTGGTGGTTTCTAGGGAATTTGAGAAACAACTATATACCTAGAAGTAATGGCTCAAC
TGATTTACAGACAAATCAGGATATAGGTACTGCCATTGTTTCAGACACTACGGACGATTTGTGG
TTTTTAAATGAGACCGTGTCAGAGCAATTAGGTGTTGGAGTAAAAGTTGAAGCTGCTAACTGTG
AGCAACCAAGTGAAGTAGGGAGAACAAGAGACAAGAAGATGGTTGAAGGGGGAAAAGATGATGA
CCTTGAGGACTCCAAGTCCTTAAGTGATGATACTGATGTGGAAGTCACTTCTGAGGATGAGTGG
CAGTGTACGGAATGCAAGAAGTTTAATTCTCCAAGCAAGAGGTACTGTTTTCGTTGCTGGGCCT
TGAGGAAGGATTGGTATTCGGATTGCTCTAAATTAACTCATTCTCTCTCTACATCTAATATCAC
TGCCATACCTGAAAAGAAGGACAATGAAGGAATCGATGTCCCCGATTGTCGGAGAACCATTTCC
GCTCCTGTGGTTAGGCCTAAAGATGGATATTTAAAGGAGGAAAAGCCCAGGTTTGACCCTTGCA
ACTCAGTGGAATTTTTGGATTTGGCCCATGGTTCTGAAAGCCAAGAGATCATCTCAAGCACAAG
AGAACAAACAGATATTTTCTCTGAGCAGAAGACAGAAACAGAAAGTATGGAAGATTTCCAGAAT
GTCTTGAAGCCCTGTAGCTTATGTGAAAAAAGGCCTCGGGATGGGAACATTATTCATGGGAAGA
CGAGCCATCTGACTACATGTTTCCACTGTGCCAGGAGACTGAAGAAGTCTGGGGCTTCATGTCC
TGCTTGTAAGAAAGAGATTCAGTTGGTTATTAAGGTTTTTATAGCATAGTTGAGTCAGTTGCAG
AGAAATACTAGGAGTACCAGGTCATTTATCAAAAGTCAGTATTCTTAGAGGAAGGGGCAGAAGA
TTACCAATTTTGATGCCAGTCTGGGCCATATAATGAGACCTCGGTCTTAAAAGGATCAGTATTG
AGCATCTTTTATAAATGTGACCCATCATATATATTTATTTATATAAGCATATATGGAATTTTAG
ATCAGTTTTGAGGGTTTCATTGATGAGAAGATACATAAATAACTTTGTTTTCCTTCCGAATTGT
AAACCCGAGAGGCAATAATACCAATACAAACATAACAATGCAAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

XM_006249777 ⟹ XP_006249839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,474,285 (-)	NCBI
Rnor_6.0	13	49,786,776 - 49,828,779 (-)	NCBI
Rnor_5.0	13	54,857,103 - 54,899,109 (-)	NCBI

Sequence:

show sequence

TGTGAACGCTGGGTATGAGAGGCCGGAAGTGGTGCTGCCGTTGCTCGCAGTTTCAAAATGCTGT
GCAGGCCTTAGGACCTTCAACTGCCACCCCTCCCCCAGCTAGGAGGGGGGAGCGACTCATGGAG
CGGCCGTAAGTTGCTAACTGAGTTTGGAATCTTCACTGCCAAAATGACATCACATTCCACCTCT
GCCCAGTGTTCAGCATCTGACAGTGCTTGCAGAATTTCTTCGGAACAAATCAATCAGGTACGAC
CAAAACTGCAGCTTCTCAAGATTTTGCAAGCAGCAGGTGCTCAGGGGGAAGTTTTCACCATGAA
AGAGGTAATGCACTATCTAGGCCAGTATATAATGGTGAAGCAGCTCTATGATCAACAGGAGCAA
CATCTGGTGTACTGTGGTGGAGACCTTTTGGGAGATCTACTTGGATGTCAGAGCTTTTCTGTGA
AAGATCCAAGCCCTCTGTATGACATGCTAAGAAAGAACCTTGTTACGTCAGCCTCTGTTAACAC
AGATGCTGCTCAGACTCTCGCTCTCGCACAGGATCACACTATGGATATTCCAAGTCAAGACCGA
CTGAAGCACGGTGCAACAGAGTGCTCCAACCCCAGAAAAAGAACTGAAGAAGATGATACTCACA
CACTGCCTACCTCACGACGTAAATGCAGAGATTCCAGAGCAGATGAAGACTTGATAGAACATTT
ATCTCAAGATGAGACATCTAGGCTTGATCTTGATTTTGAGGAGTGGGATGTTGCTGGCCTGCCT
TGGTGGTTTCTAGGGAATTTGAGAAACAACTATATACCTAGAAGTAATGGCTCAACTGATTTAC
AGACAAATCAGGATATAGGTACTGCCATTGTTTCAGACACTACGGACGATTTGTGGTTTTTAAA
TGAGACCGTGTCAGAGCAATTAGGTGTTGGAGTAAAAGTTGAAGCTGCTAACTGTGAGCAACCA
AGTGAAGTAGGGAGAACAAGAGACAAGAAGATGGTTGAAGGGGGAAAAGATGATGACCTTGAGG
ACTCCAAGTCCTTAAGTGATGATACTGATGTGGAAGTCACTTCTGAGGATGAGTGGCAGTGTAC
GGAATGCAAGAAGTTTAATTCTCCAAGCAAGAGGTACTGTTTTCGTTGCTGGGCCTTGAGGAAG
GATTGGTATTCGGATTGCTCTAAATTAACTCATTCTCTCTCTACATCTAATATCACTGCCATAC
CTGAAAAGAAGGACAATGAAGGAATCGATGTCCCCGATTGTCGGAGAACCATTTCCGCTCCTGT
GGTTAGGCCTAAAGATGGATATTTAAAGGAGGAAAAGCCCAGGTTTGACCCTTGCAACTCAGTG
GAATTTTTGGATTTGGCCCATGGTTCTGAAAGCCAAGAGATCATCTCAAGCACAAGAGAACAAA
CAGATATTTTCTCTGAGCAGAAGACAGAAACAGAAAGTATGGAAGATTTCCAGAATGTCTTGAA
GCCCTGTAGCTTATGTGAAAAAAGGCCTCGGGATGGGAACATTATTCATGGGAAGACGAGCCAT
CTGACTACATGTTTCCACTGTGCCAGGAGACTGAAGAAGTCTGGGGCTTCATGTCCTGCTTGTA
AGAAAGAGATTCAGTTGGTTATTAAGGTTTTTATAGCATAGTTGAGTCAGTTGCAGAGAAATAC
TAGGAGTACCAGGTCATTTATCAAAAGTCAGTATTCTTAGAGGAAGGGGCAGAAGATTACCAAT
TTTGATGCCAGTCTGGGCCATATAATGAGACCTCGGTCTTAAAAGGATCAGTATTGAGCATCTT
TTATAAATGTGACCCATCATATATATTTATTTATATAAGCATATATGGAATTTTAGATCAGTTT
TGAGGGTTTCATTGATGAGAAGATACATAAATAACTTTGTTTTCCTTCCGAATTGTAAACCCGA
GAGGCAATAATACCAATACAAACATAACAATGCATTCTTTTATTCACTTCCAAAATTATTGCAA
GAATAATATAATACATTAGTCGATTTATTCTTTACCCTGCTGTTATGTAATGTTCTTGAGGCAT
CAAAGTCTAAGGTAGTTATTAAAAAACATACTAGGGCTAACACTGAAGAGAGCAGATCTGATGA
GCAGTCGCTCATTGTGCAGCCAAGGATGACATTAAACTCTTCATCCCCTCATCCCCTTATCTCT
GCCATCTACACACCTCTGCTTACTGTGCCCATGTGAAATCTTAGTTTTAGAACAAATACCACAG
GTGTACATCTCACAGCCTTATTAGTTATCAGTCCTAAAAGAGAAAAGGTGCAGACTTTGTAGCC
AGCACTTTGCATTTGTCAGAAGCTGGCTAGGTGTTCTGTATCTTGTGCTCTGGAGTTGTTCCCA
TTCTAAGGCAGTGGCCTATGATGGGACTTGAGCAAGTGTGGGAGCAGTGTAGCAGCTGTGAAAG
GGACGGAAACAAATTGATCACTTCAGTTCTGCTTAGTCATTTTAGACCACATCAATTTAGTAGA
ATACCGACAAATGACCTGAAGGTCTTTGAACTGAACCCCTTGTATCTGTTCTGTGTCCACTGAA
CCCATAGAGGCCATCTTGATGTTTCCCCAGGGATATGAATATGTCATTTTAAAGACAAGTTCCT
AGAACTATTGAACTTGAGGGTAATCTAGCCATCTTGGCCTTCCTTTGGCTCCTGCTGTTAGGAA
GGGTGATATCTAGTCCCGTTATGTCATTATGTCTCTGCTGGATCGGGACCACTGGGGCTCTTGT
AATCAGTACTGAGGGGAGCTCTGTTAGCTTATGTTCTTACATTGCCCCCATGTTTCCTGTCCGT
CCCGTGCTTTACCAGTAGACCCCAATTCCCAGGAGATAAGTTATCATAGTTACTCTCTATTGCC
GTGACAAAGCACCAGTGCAAAATAGAAAAGGAAGTATTAATTGGGTTTGCTTTTGAGACAGTTA
AGAATCCATGATGGCAGGAACAACTGAGAGCTCACATCTTGATCTGCAAGTCGGAGGCAGAGAA
AGAACCCTGGGAAACCCCAGGGCCTGCCCCCCAGTGTCGTACTTGGTCTACAGTTTCTACCAAC
TGGGGGCCAAGTATTCAAACTTATGAGCCTATGGTTTATATTTTCATGTAAAGTGCCACATTCC
ACTCCCTAGTCACCATAGGCTCTTGGCCATATTACAATGCAAAATGCATTTTAGCCCAACCTCA
AAATTCCTCAGAGTCTTTTTTTACTCTTGACATAATTTAAAGTCACAGTCTCTTCTGAACTCAA
AGGAGTCTCATAATTGTAACCCCCTGAAAAAGCAAAAAAGCAAATTATACATTTCTAACACACA
ATGGCACAGAATATACATTACTATTCCAAAAAGTTATATTTCAGCAATAGTGAGAAAATTCTGA
ACCAACGCTCGACTGAAACCCAGCAGGGCAATTTACAAGTCCCGTAACTCCATGTCTATATCAA
AGGGTTTATAGTTACCCTTTTGGATTTGTTGACTGCAACATACTTTGCCTGATTCCATTTCTTG
TGTGCAGCCCTCCCTGACAGATAGCACACGGTTCTGACGCCTCTGGCATTCATAGGTCCCAGTG
CAACTCAGGCTTTACTTTCACAGCTTCATGCAGTGGCCTCTTGGGGCTTCTTGCCCTCTCAGGG
CCTTCATGCAGAAACTGCCTCACAACCCATTCTGTGATATTAGTGACTCCTTAACTATGGAGAA
AGATTCCACAGCCATGTATCCTCCCATGTATCCTTCATGACTCTAAGCCAGATGACATTGCTGA
GTTCTGCATGCCTCACATGGAGCCTGACCTTGAGTCACTCCCAGTGGTGTTCATGTGTTGTTGC
CTTTAGAAGCAGAGAATTCCTTAGGCCTTTTCCTTTCATAAGTTGGAATCCTAACTGGGCGGAG
CTTTATCCTGTTCATCCCTCTTTATCTGGCTTCTCCTTAATCTCTATCTCTTTGAGCACATTAA
CTTCCCTGTGGGCTTTTCTTGGAGATTTTTTATTGTAGTCCTGTATAAAAATGCTGCAGAGCCA
GAATTAAGCTTTCCTGCAATTTCCTCTATCAAAGAAATTAGTCTCATTACTTTTCACTTCGGGC
TTAGGCAGATTCTTGGGACAAGGGTAGAAGGCAGCTACATTCTTTGCCAAAAGAAAACAAGAGT
AAGTCTTTAGCCAGTTACTAATGTTTTACCCCTAAGCCTCTTGCTCTAGCCCTCCACAGATCAT
ACTCTCAGCAAGGCTGTCTCCTAGGCTTCTACTGGACCCATTAAGCTCTGCTTACAGCCTTGAA
CCCTTTATTTTCTTAGTTCAAAGTCCCAGAGTTTTCTACATTCCTCCAAAAAAAAAAAAAAAAC
CATATGGTTAGGTCTTTCACAGCTAAGATCCGCTTCCTGGTACCAGCTTCTGTGTCTTGGCTAC
TCTTCAATTGCTATGACAAAGCACCTGACTAAGGCAGAGAATATAGGAAAGCATTTATAGGGTT
TATAGTTTAAGAGGGTTTTAGTTCATGATAGAAGAACAGTTGAGAACTTTTATCTTGATCTGCA
AGTAGGATGCAAAAAGAAAACTCCGGGAAGGGCATGTTCTTCTGAAACTTCAAAGCCTTCACCT
TGTGACACACCTCCCCAACAAAGCCTTATCTCCTAGTCCTTTCCAAATAGTTCCTCCAACTGGG
GACCAAATATTCCAACATGAGCGCTGGGGAGCATTCTCCTTCAAACCACTAGTTTCCCAAGGAG
CTCTTTCCTAACCACATCTTGTGCTTCCCCCAGTTGATGATTTCACTAGTTAACTTAGGTAGTT
TTGCCTTTCTCAGTGGTCACATCTTCTGCTCATATTGAAGATCCTGCAGCTCCAGTTGGGCTTG
ATGTGCATTTTCTTTGAGGAACTGATAACAGACATGTTTATCTGCATCTCCATGATAGTGAGAA
AAAGTAGCTTCGAGGTAATCATAGCTGTTATCAGTCTCAGTCCCTAGTTGAGAATAGGCTGTGA
TCTACCTAGCCCTGGACTCTAGTTATTTCCTAGACATGGACCTCCTGGGTGGAATTGGGTCATT
AGGATGTTTAATTCCAAGCATAACTTTCAAGATAGGATGCGTTATATAGTACATCAGTTTCATC
TAAGGCTTTTCTTAATCTTTAGGGGTAGAATTTAGCTGTTTTGCCATGACTGGCCTGGGCCTTA
CCCTATATCTCAGGCTGGTCTTCTTTTCAGTGACCTTCCCGCTTTTGCCTCTCCATTGCTGGAA
TTCTAGGCATGTGATGACTAAATTTCTTATTTTAAGTCATTTAAGTTAGGTTTTGTTATGCTAT
TTTGGACAAAAAGTGCAGAGCAGAGATGATAGATTATTAGAACAGTCTCCAGGGCCTCACTGTT
ACTGCGTTCCTCACAGGGGCCTTCATGATTGATGATGTGCTTCAGTTTACTGCTGTGTCAGGTG
AGAGGGTCAGAGCAAGGCTCCACACAGGTTACTGCCTCCCTGGCCTACTTAGGACACAGTAGAT
TCATGATCGAGGGCTGGAACTGGTAGATTAGAGCAGCCAGACTGGCCCTTCCCTGCCACAGGAT
TGTATAATAGAACATGGCACCACCAGGCATTTGTGACCGTGGATGTGTTCATTATTTATGTATA
TTTAGATGTGTGTGATACTTGGCATGGTTTGAAAGAATTTATTCTGAAAGCCAGGATCATTTTA
ATCTTTGTGTGTCAATTCAGTGTAATGTTGGGGCCTTTGAAAAGTTGATTAAGAAATTAGGGAA
CATTCCCAGTTCCTTCATGTTACCTGTTTAGTTCTCTCTGGAAAGGAAGACACTTGGACCAGCT
GTTCGGCTGTTTTGTTTTGTTCTGTTTCCATGATATTCTATGAATCTCCATGGCTTTAGATACT
GTGACTTATTTTCCCTTTAGCCCAAATTGTTGATTCAGTCTTAAGAATACTATTTTTTGATGCC
CCTTGTGTGTGCACACTGTCTAGATTGATGCTACCTTTGCTAAAAATGTCGTAAGATAAAGAAC
TAGCTGTTTAGAACCTGCACTTCAAAGATAAACCGGGAAGCTGCCCTCTGTGCCAAAAGTAAAG
TGTACAATGTTTACAGATGGGTGACGTTTGCACTGCCATAGGGAATGGTGAGACTATGTTACCA
GACCCTTAGATTTATGAGTAGGTGGTTGCAGTTAAGCCTATGAGAGGATCTGTTGAGCCTTTTA
AGGCTAAGCTGGTAAGAGTTCCGAGACAGGTGGTTGGTTAGAGTGATTTCCTAGACCTCACTTG
GGTCTTTCTGTTGACAGTTCTTCATGGCTTCAAGCAGATACCATATGCTTTCTTTAGAGGAGCT
GCCAGCCCTCCCTCCTGTGAGAGATTGTCGCGTAGACATTTTGAAATCTTTCGATGTAATGTGC
AATCCCAAGTAATGCCATTATTGGTGAATGTAGCATTGTTAAACTCTTGCTGTAGGTTATTTCT
GATCTTCCCTTGATAGCCTTCTTTTTTTTGTTTTTTTGTGTTTGTTTTGTTTTCAGAGACTAAA
GTCTCACTATTTGGTTGACCTAGAACTTGCTTTATGACTAGGCTGTCCCCAAACTCACAGAGAT
CTGCCTTTCTGCCACCATGCCCATCCTCAGTAGTTTTCTGAATGACCGATGTCACAGAAAGTGA
TCTCACATCTGTGGTGTTGCTTTCCCAGTTTATGTCATTGCATAGGCACAGCACAGTAGAATCC
CGTTTCTTAGACTGGAGGAGTCCGAGATAAGCTAAAAAGGCTAGTAGTTCCTTCAGTGGTTTTA
GAGCTTGGCAGATGCTTTACTGAAGATCAGCATTGTGTTGTGACTCTTGAGGGCCAATATGAGC
ATTTAATTTGTTACCCAAAGGTGCTTTGTATTTTTAAACAGCAAGTACTTTGATGTGTGTAGAC
ATTTCCCTTCGTTTTCCCTCCCTCCCTCCCCATTGCGTTTGAACATTGTTTATGCCAGAGGCCA
TCTGTCACTCTGGGTGTTTAGAAGTGCAGTATACTTAAGTAGGGTCCTTCTTCAGCCTGTCCTG
AGCAGTGTTGTGGTTACAGAGTGGGACCATGAGCTCTCTCAGAGAGGAGGGAAGCTGTGAGGGC
AAGCTGGCTTCCTTTGTGGGGGTGTTGGGGTTTGTTTGAGCACTAAGGAATTTGAGGTCAGTCT
TCCCCCTCTTCCTGCCCATAGTTTTCACTTTCCTTTCAGTAAGAACCACCCCTTAAAAGAAAAC
AGGAGGAGATGCAGTGCTTTTGGCCTTAGCCAGCAGCTTGGGGCCTACTCTGGAAGTTGTAAGC
TACAGTTTTTCTTACCTGTAAAGCCAGCACACACACCTACCTACCCTTCTACCTCAGTTTATTG
TGGAGACTATGGAGGAGCAACTCTTAACAACTCTGACTGCCTTGAAGGTGGAGGAAGCTTGTAG
TCTTGGTCAACTGTGCTCTGAGGTTTATATTGAGAATTCTTTATGTTCTGGAAGTGTTTACTTC
TCCTTGATGCCTGCTTAGTAGAACCTGCATTGTTTGCTGTAAGTCTCTGCTCACCTGCTCGTCC
TTTCCTTGGCACCAGGCTCTTGATTAGGAAGAGTCATCTCCAGATGCTTTGAGAAGCACATGTA
AGTTTCCGTAGCACACTCTGCTGATGGAGCGCTTGCTCTTCTGTGGGCTTGCTGTGTAGGAACT
GGTTCTGCATACACTTGAGTAGCTGGCATAAGATGCCCTGCTGCTGGTGTGCAGGAGGAGGTTT
CATGGCATTCCCAGTCTGGTGCTTGCCAGTGCAGGAGCAAACGAGGGTAATAAACTGAGAAGAA
CGGCAGCTTACTAACGAGGCCAGAGGGAAATGTTTCCGTGTGTCCTTGTGTAACTTTTTACAGC
GCCACTAAGTTAATAGCCCTGTACCTGGGTGTTTGCACTATGTAATGCTTCTAATGCCTTTTTA
TTGTGTTTTTGTGTGATTAAACAATTTTCATTTCA

hide sequence

RefSeq Acc Id:

XM_006249778 ⟹ XP_006249840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,474,285 (-)	NCBI
Rnor_6.0	13	49,786,776 - 49,828,780 (-)	NCBI
Rnor_5.0	13	54,857,103 - 54,899,109 (-)	NCBI

Sequence:

show sequence

TTGTGAACGCTGGGTATGAGAGGCCGGAAGTGGTGCTGCCGTTGCTCGCAGTTTCAAAATGCTG
TGCAGGCCTTAGGACCTTCAACTGCCACCCCTCCCCCAGCTAGGAGGGGGGAGCGACTCATGGA
GCGGCCGTAAGTTGCTAACTGAGTTTGGAATCTTCACTGCCAAAATGACATCACATTCCACCTC
TGCCCAGTGTTCAGCATCTGACAGTGCTTGCAGAATTTCTTCGGAACAAATCAATCAGCAGGTA
CGACCAAAACTGCAGCTTCTCAAGATTTTGCAAGCAGCAGGTGCTCAGGGGGAAGTTTTCACCA
TGAAAGAGGTAATGCACTATCTAGGCCAGTATATAATGGTGAAGCAGCTCTATGATCAACAGGA
GCAACATCTGGTGTACTGTGGTGGAGACCTTTTGGGAGATCTACTTGGATGTCAGAGCTTTTCT
GTGAAAGATCCAAGCCCTCTGTATGACATGCTAAGAAAGAACCTTGTTACGTCAGCCTCTGTTA
ACACAGATGCTGCTCAGACTCTCGCTCTCGCACAGGATCACACTATGGATATTCCAAGTCAAGA
CCGACTGAAGCACGGTGCAACAGAGTGCTCCAACCCCAGAAAAAGAACTGAAGAAGATGATACT
CACACACTGCCTACCTCACGACGTAAATGCAGAGATTCCAGAGCAGATGAAGACTTGATAGAAC
ATTTATCTCAAGATGAGACATCTAGGCTTGATCTTGATTTTGAGGAGTGGGATGTTGCTGGCCT
GCCTTGGTGGTTTCTAGGGAATTTGAGAAACAACTATATACCTAGAAGTAATGGCTCAACTGAT
TTACAGACAAATCAGATGGTTGAAGGGGGAAAAGATGATGACCTTGAGGACTCCAAGTCCTTAA
GTGATGATACTGATGTGGAAGTCACTTCTGAGGATGAGTGGCAGTGTACGGAATGCAAGAAGTT
TAATTCTCCAAGCAAGAGGTACTGTTTTCGTTGCTGGGCCTTGAGGAAGGATTGGTATTCGGAT
TGCTCTAAATTAACTCATTCTCTCTCTACATCTAATATCACTGCCATACCTGAAAAGAAGGACA
ATGAAGGAATCGATGTCCCCGATTGTCGGAGAACCATTTCCGCTCCTGTGGTTAGGCCTAAAGA
TGGATATTTAAAGGAGGAAAAGCCCAGGTTTGACCCTTGCAACTCAGTGGAATTTTTGGATTTG
GCCCATGGTTCTGAAAGCCAAGAGATCATCTCAAGCACAAGAGAACAAACAGATATTTTCTCTG
AGCAGAAGACAGAAACAGAAAGTATGGAAGATTTCCAGAATGTCTTGAAGCCCTGTAGCTTATG
TGAAAAAAGGCCTCGGGATGGGAACATTATTCATGGGAAGACGAGCCATCTGACTACATGTTTC
CACTGTGCCAGGAGACTGAAGAAGTCTGGGGCTTCATGTCCTGCTTGTAAGAAAGAGATTCAGT
TGGTTATTAAGGTTTTTATAGCATAGTTGAGTCAGTTGCAGAGAAATACTAGGAGTACCAGGTC
ATTTATCAAAAGTCAGTATTCTTAGAGGAAGGGGCAGAAGATTACCAATTTTGATGCCAGTCTG
GGCCATATAATGAGACCTCGGTCTTAAAAGGATCAGTATTGAGCATCTTTTATAAATGTGACCC
ATCATATATATTTATTTATATAAGCATATATGGAATTTTAGATCAGTTTTGAGGGTTTCATTGA
TGAGAAGATACATAAATAACTTTGTTTTCCTTCCGAATTGTAAACCCGAGAGGCAATAATACCA
ATACAAACATAACAATGCATTCTTTTATTCACTTCCAAAATTATTGCAAGAATAATATAATACA
TTAGTCGATTTATTCTTTACCCTGCTGTTATGTAATGTTCTTGAGGCATCAAAGTCTAAGGTAG
TTATTAAAAAACATACTAGGGCTAACACTGAAGAGAGCAGATCTGATGAGCAGTCGCTCATTGT
GCAGCCAAGGATGACATTAAACTCTTCATCCCCTCATCCCCTTATCTCTGCCATCTACACACCT
CTGCTTACTGTGCCCATGTGAAATCTTAGTTTTAGAACAAATACCACAGGTGTACATCTCACAG
CCTTATTAGTTATCAGTCCTAAAAGAGAAAAGGTGCAGACTTTGTAGCCAGCACTTTGCATTTG
TCAGAAGCTGGCTAGGTGTTCTGTATCTTGTGCTCTGGAGTTGTTCCCATTCTAAGGCAGTGGC
CTATGATGGGACTTGAGCAAGTGTGGGAGCAGTGTAGCAGCTGTGAAAGGGACGGAAACAAATT
GATCACTTCAGTTCTGCTTAGTCATTTTAGACCACATCAATTTAGTAGAATACCGACAAATGAC
CTGAAGGTCTTTGAACTGAACCCCTTGTATCTGTTCTGTGTCCACTGAACCCATAGAGGCCATC
TTGATGTTTCCCCAGGGATATGAATATGTCATTTTAAAGACAAGTTCCTAGAACTATTGAACTT
GAGGGTAATCTAGCCATCTTGGCCTTCCTTTGGCTCCTGCTGTTAGGAAGGGTGATATCTAGTC
CCGTTATGTCATTATGTCTCTGCTGGATCGGGACCACTGGGGCTCTTGTAATCAGTACTGAGGG
GAGCTCTGTTAGCTTATGTTCTTACATTGCCCCCATGTTTCCTGTCCGTCCCGTGCTTTACCAG
TAGACCCCAATTCCCAGGAGATAAGTTATCATAGTTACTCTCTATTGCCGTGACAAAGCACCAG
TGCAAAATAGAAAAGGAAGTATTAATTGGGTTTGCTTTTGAGACAGTTAAGAATCCATGATGGC
AGGAACAACTGAGAGCTCACATCTTGATCTGCAAGTCGGAGGCAGAGAAAGAACCCTGGGAAAC
CCCAGGGCCTGCCCCCCAGTGTCGTACTTGGTCTACAGTTTCTACCAACTGGGGGCCAAGTATT
CAAACTTATGAGCCTATGGTTTATATTTTCATGTAAAGTGCCACATTCCACTCCCTAGTCACCA
TAGGCTCTTGGCCATATTACAATGCAAAATGCATTTTAGCCCAACCTCAAAATTCCTCAGAGTC
TTTTTTTACTCTTGACATAATTTAAAGTCACAGTCTCTTCTGAACTCAAAGGAGTCTCATAATT
GTAACCCCCTGAAAAAGCAAAAAAGCAAATTATACATTTCTAACACACAATGGCACAGAATATA
CATTACTATTCCAAAAAGTTATATTTCAGCAATAGTGAGAAAATTCTGAACCAACGCTCGACTG
AAACCCAGCAGGGCAATTTACAAGTCCCGTAACTCCATGTCTATATCAAAGGGTTTATAGTTAC
CCTTTTGGATTTGTTGACTGCAACATACTTTGCCTGATTCCATTTCTTGTGTGCAGCCCTCCCT
GACAGATAGCACACGGTTCTGACGCCTCTGGCATTCATAGGTCCCAGTGCAACTCAGGCTTTAC
TTTCACAGCTTCATGCAGTGGCCTCTTGGGGCTTCTTGCCCTCTCAGGGCCTTCATGCAGAAAC
TGCCTCACAACCCATTCTGTGATATTAGTGACTCCTTAACTATGGAGAAAGATTCCACAGCCAT
GTATCCTCCCATGTATCCTTCATGACTCTAAGCCAGATGACATTGCTGAGTTCTGCATGCCTCA
CATGGAGCCTGACCTTGAGTCACTCCCAGTGGTGTTCATGTGTTGTTGCCTTTAGAAGCAGAGA
ATTCCTTAGGCCTTTTCCTTTCATAAGTTGGAATCCTAACTGGGCGGAGCTTTATCCTGTTCAT
CCCTCTTTATCTGGCTTCTCCTTAATCTCTATCTCTTTGAGCACATTAACTTCCCTGTGGGCTT
TTCTTGGAGATTTTTTATTGTAGTCCTGTATAAAAATGCTGCAGAGCCAGAATTAAGCTTTCCT
GCAATTTCCTCTATCAAAGAAATTAGTCTCATTACTTTTCACTTCGGGCTTAGGCAGATTCTTG
GGACAAGGGTAGAAGGCAGCTACATTCTTTGCCAAAAGAAAACAAGAGTAAGTCTTTAGCCAGT
TACTAATGTTTTACCCCTAAGCCTCTTGCTCTAGCCCTCCACAGATCATACTCTCAGCAAGGCT
GTCTCCTAGGCTTCTACTGGACCCATTAAGCTCTGCTTACAGCCTTGAACCCTTTATTTTCTTA
GTTCAAAGTCCCAGAGTTTTCTACATTCCTCCAAAAAAAAAAAAAAAACCATATGGTTAGGTCT
TTCACAGCTAAGATCCGCTTCCTGGTACCAGCTTCTGTGTCTTGGCTACTCTTCAATTGCTATG
ACAAAGCACCTGACTAAGGCAGAGAATATAGGAAAGCATTTATAGGGTTTATAGTTTAAGAGGG
TTTTAGTTCATGATAGAAGAACAGTTGAGAACTTTTATCTTGATCTGCAAGTAGGATGCAAAAA
GAAAACTCCGGGAAGGGCATGTTCTTCTGAAACTTCAAAGCCTTCACCTTGTGACACACCTCCC
CAACAAAGCCTTATCTCCTAGTCCTTTCCAAATAGTTCCTCCAACTGGGGACCAAATATTCCAA
CATGAGCGCTGGGGAGCATTCTCCTTCAAACCACTAGTTTCCCAAGGAGCTCTTTCCTAACCAC
ATCTTGTGCTTCCCCCAGTTGATGATTTCACTAGTTAACTTAGGTAGTTTTGCCTTTCTCAGTG
GTCACATCTTCTGCTCATATTGAAGATCCTGCAGCTCCAGTTGGGCTTGATGTGCATTTTCTTT
GAGGAACTGATAACAGACATGTTTATCTGCATCTCCATGATAGTGAGAAAAAGTAGCTTCGAGG
TAATCATAGCTGTTATCAGTCTCAGTCCCTAGTTGAGAATAGGCTGTGATCTACCTAGCCCTGG
ACTCTAGTTATTTCCTAGACATGGACCTCCTGGGTGGAATTGGGTCATTAGGATGTTTAATTCC
AAGCATAACTTTCAAGATAGGATGCGTTATATAGTACATCAGTTTCATCTAAGGCTTTTCTTAA
TCTTTAGGGGTAGAATTTAGCTGTTTTGCCATGACTGGCCTGGGCCTTACCCTATATCTCAGGC
TGGTCTTCTTTTCAGTGACCTTCCCGCTTTTGCCTCTCCATTGCTGGAATTCTAGGCATGTGAT
GACTAAATTTCTTATTTTAAGTCATTTAAGTTAGGTTTTGTTATGCTATTTTGGACAAAAAGTG
CAGAGCAGAGATGATAGATTATTAGAACAGTCTCCAGGGCCTCACTGTTACTGCGTTCCTCACA
GGGGCCTTCATGATTGATGATGTGCTTCAGTTTACTGCTGTGTCAGGTGAGAGGGTCAGAGCAA
GGCTCCACACAGGTTACTGCCTCCCTGGCCTACTTAGGACACAGTAGATTCATGATCGAGGGCT
GGAACTGGTAGATTAGAGCAGCCAGACTGGCCCTTCCCTGCCACAGGATTGTATAATAGAACAT
GGCACCACCAGGCATTTGTGACCGTGGATGTGTTCATTATTTATGTATATTTAGATGTGTGTGA
TACTTGGCATGGTTTGAAAGAATTTATTCTGAAAGCCAGGATCATTTTAATCTTTGTGTGTCAA
TTCAGTGTAATGTTGGGGCCTTTGAAAAGTTGATTAAGAAATTAGGGAACATTCCCAGTTCCTT
CATGTTACCTGTTTAGTTCTCTCTGGAAAGGAAGACACTTGGACCAGCTGTTCGGCTGTTTTGT
TTTGTTCTGTTTCCATGATATTCTATGAATCTCCATGGCTTTAGATACTGTGACTTATTTTCCC
TTTAGCCCAAATTGTTGATTCAGTCTTAAGAATACTATTTTTTGATGCCCCTTGTGTGTGCACA
CTGTCTAGATTGATGCTACCTTTGCTAAAAATGTCGTAAGATAAAGAACTAGCTGTTTAGAACC
TGCACTTCAAAGATAAACCGGGAAGCTGCCCTCTGTGCCAAAAGTAAAGTGTACAATGTTTACA
GATGGGTGACGTTTGCACTGCCATAGGGAATGGTGAGACTATGTTACCAGACCCTTAGATTTAT
GAGTAGGTGGTTGCAGTTAAGCCTATGAGAGGATCTGTTGAGCCTTTTAAGGCTAAGCTGGTAA
GAGTTCCGAGACAGGTGGTTGGTTAGAGTGATTTCCTAGACCTCACTTGGGTCTTTCTGTTGAC
AGTTCTTCATGGCTTCAAGCAGATACCATATGCTTTCTTTAGAGGAGCTGCCAGCCCTCCCTCC
TGTGAGAGATTGTCGCGTAGACATTTTGAAATCTTTCGATGTAATGTGCAATCCCAAGTAATGC
CATTATTGGTGAATGTAGCATTGTTAAACTCTTGCTGTAGGTTATTTCTGATCTTCCCTTGATA
GCCTTCTTTTTTTTGTTTTTTTGTGTTTGTTTTGTTTTCAGAGACTAAAGTCTCACTATTTGGT
TGACCTAGAACTTGCTTTATGACTAGGCTGTCCCCAAACTCACAGAGATCTGCCTTTCTGCCAC
CATGCCCATCCTCAGTAGTTTTCTGAATGACCGATGTCACAGAAAGTGATCTCACATCTGTGGT
GTTGCTTTCCCAGTTTATGTCATTGCATAGGCACAGCACAGTAGAATCCCGTTTCTTAGACTGG
AGGAGTCCGAGATAAGCTAAAAAGGCTAGTAGTTCCTTCAGTGGTTTTAGAGCTTGGCAGATGC
TTTACTGAAGATCAGCATTGTGTTGTGACTCTTGAGGGCCAATATGAGCATTTAATTTGTTACC
CAAAGGTGCTTTGTATTTTTAAACAGCAAGTACTTTGATGTGTGTAGACATTTCCCTTCGTTTT
CCCTCCCTCCCTCCCCATTGCGTTTGAACATTGTTTATGCCAGAGGCCATCTGTCACTCTGGGT
GTTTAGAAGTGCAGTATACTTAAGTAGGGTCCTTCTTCAGCCTGTCCTGAGCAGTGTTGTGGTT
ACAGAGTGGGACCATGAGCTCTCTCAGAGAGGAGGGAAGCTGTGAGGGCAAGCTGGCTTCCTTT
GTGGGGGTGTTGGGGTTTGTTTGAGCACTAAGGAATTTGAGGTCAGTCTTCCCCCTCTTCCTGC
CCATAGTTTTCACTTTCCTTTCAGTAAGAACCACCCCTTAAAAGAAAACAGGAGGAGATGCAGT
GCTTTTGGCCTTAGCCAGCAGCTTGGGGCCTACTCTGGAAGTTGTAAGCTACAGTTTTTCTTAC
CTGTAAAGCCAGCACACACACCTACCTACCCTTCTACCTCAGTTTATTGTGGAGACTATGGAGG
AGCAACTCTTAACAACTCTGACTGCCTTGAAGGTGGAGGAAGCTTGTAGTCTTGGTCAACTGTG
CTCTGAGGTTTATATTGAGAATTCTTTATGTTCTGGAAGTGTTTACTTCTCCTTGATGCCTGCT
TAGTAGAACCTGCATTGTTTGCTGTAAGTCTCTGCTCACCTGCTCGTCCTTTCCTTGGCACCAG
GCTCTTGATTAGGAAGAGTCATCTCCAGATGCTTTGAGAAGCACATGTAAGTTTCCGTAGCACA
CTCTGCTGATGGAGCGCTTGCTCTTCTGTGGGCTTGCTGTGTAGGAACTGGTTCTGCATACACT
TGAGTAGCTGGCATAAGATGCCCTGCTGCTGGTGTGCAGGAGGAGGTTTCATGGCATTCCCAGT
CTGGTGCTTGCCAGTGCAGGAGCAAACGAGGGTAATAAACTGAGAAGAACGGCAGCTTACTAAC
GAGGCCAGAGGGAAATGTTTCCGTGTGTCCTTGTGTAACTTTTTACAGCGCCACTAAGTTAATA
GCCCTGTACCTGGGTGTTTGCACTATGTAATGCTTCTAATGCCTTTTTATTGTGTTTTTGTGTG
ATTAAACAATTTTCATTTCA

hide sequence

RefSeq Acc Id:

XM_006249779 ⟹ XP_006249841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,474,285 (-)	NCBI
Rnor_6.0	13	49,786,776 - 49,828,780 (-)	NCBI
Rnor_5.0	13	54,857,103 - 54,899,109 (-)	NCBI

Sequence:

show sequence

TTGTGAACGCTGGGTATGAGAGGCCGGAAGTGGTGCTGCCGTTGCTCGCAGTTTCAAAATGCTG
TGCAGGCCTTAGGACCTTCAACTGCCACCCCTCCCCCAGCTAGGAGGGGGGAGCGACTCATGGA
GCGGCCGTAAGTTGCTAACTGAGTTTGGAATCTTCACTGCCAAAATGACATCACATTCCACCTC
TGCCCAGTGTTCAGCATCTGACAGTGCTTGCAGAATTTCTTCGGAACAAATCAATCAGGTACGA
CCAAAACTGCAGCTTCTCAAGATTTTGCAAGCAGCAGGTGCTCAGGGGGAAGTTTTCACCATGA
AAGAGGTAATGCACTATCTAGGCCAGTATATAATGGTGAAGCAGCTCTATGATCAACAGGAGCA
ACATCTGGTGTACTGTGGTGGAGACCTTTTGGGAGATCTACTTGGATGTCAGAGCTTTTCTGTG
AAAGATCCAAGCCCTCTGTATGACATGCTAAGAAAGAACCTTGTTACGTCAGCCTCTGTTAACA
CAGATGCTGCTCAGACTCTCGCTCTCGCACAGGATCACACTATGGATATTCCAAGTCAAGACCG
ACTGAAGCACGGTGCAACAGAGTGCTCCAACCCCAGAAAAAGAACTGAAGAAGATGATACTCAC
ACACTGCCTACCTCACGACGTAAATGCAGAGATTCCAGAGCAGATGAAGACTTGATAGAACATT
TATCTCAAGATGAGACATCTAGGCTTGATCTTGATTTTGAGGAGTGGGATGTTGCTGGCCTGCC
TTGGTGGTTTCTAGGGAATTTGAGAAACAACTATATACCTAGAAGTAATGGCTCAACTGATTTA
CAGACAAATCAGATGGTTGAAGGGGGAAAAGATGATGACCTTGAGGACTCCAAGTCCTTAAGTG
ATGATACTGATGTGGAAGTCACTTCTGAGGATGAGTGGCAGTGTACGGAATGCAAGAAGTTTAA
TTCTCCAAGCAAGAGGTACTGTTTTCGTTGCTGGGCCTTGAGGAAGGATTGGTATTCGGATTGC
TCTAAATTAACTCATTCTCTCTCTACATCTAATATCACTGCCATACCTGAAAAGAAGGACAATG
AAGGAATCGATGTCCCCGATTGTCGGAGAACCATTTCCGCTCCTGTGGTTAGGCCTAAAGATGG
ATATTTAAAGGAGGAAAAGCCCAGGTTTGACCCTTGCAACTCAGTGGAATTTTTGGATTTGGCC
CATGGTTCTGAAAGCCAAGAGATCATCTCAAGCACAAGAGAACAAACAGATATTTTCTCTGAGC
AGAAGACAGAAACAGAAAGTATGGAAGATTTCCAGAATGTCTTGAAGCCCTGTAGCTTATGTGA
AAAAAGGCCTCGGGATGGGAACATTATTCATGGGAAGACGAGCCATCTGACTACATGTTTCCAC
TGTGCCAGGAGACTGAAGAAGTCTGGGGCTTCATGTCCTGCTTGTAAGAAAGAGATTCAGTTGG
TTATTAAGGTTTTTATAGCATAGTTGAGTCAGTTGCAGAGAAATACTAGGAGTACCAGGTCATT
TATCAAAAGTCAGTATTCTTAGAGGAAGGGGCAGAAGATTACCAATTTTGATGCCAGTCTGGGC
CATATAATGAGACCTCGGTCTTAAAAGGATCAGTATTGAGCATCTTTTATAAATGTGACCCATC
ATATATATTTATTTATATAAGCATATATGGAATTTTAGATCAGTTTTGAGGGTTTCATTGATGA
GAAGATACATAAATAACTTTGTTTTCCTTCCGAATTGTAAACCCGAGAGGCAATAATACCAATA
CAAACATAACAATGCATTCTTTTATTCACTTCCAAAATTATTGCAAGAATAATATAATACATTA
GTCGATTTATTCTTTACCCTGCTGTTATGTAATGTTCTTGAGGCATCAAAGTCTAAGGTAGTTA
TTAAAAAACATACTAGGGCTAACACTGAAGAGAGCAGATCTGATGAGCAGTCGCTCATTGTGCA
GCCAAGGATGACATTAAACTCTTCATCCCCTCATCCCCTTATCTCTGCCATCTACACACCTCTG
CTTACTGTGCCCATGTGAAATCTTAGTTTTAGAACAAATACCACAGGTGTACATCTCACAGCCT
TATTAGTTATCAGTCCTAAAAGAGAAAAGGTGCAGACTTTGTAGCCAGCACTTTGCATTTGTCA
GAAGCTGGCTAGGTGTTCTGTATCTTGTGCTCTGGAGTTGTTCCCATTCTAAGGCAGTGGCCTA
TGATGGGACTTGAGCAAGTGTGGGAGCAGTGTAGCAGCTGTGAAAGGGACGGAAACAAATTGAT
CACTTCAGTTCTGCTTAGTCATTTTAGACCACATCAATTTAGTAGAATACCGACAAATGACCTG
AAGGTCTTTGAACTGAACCCCTTGTATCTGTTCTGTGTCCACTGAACCCATAGAGGCCATCTTG
ATGTTTCCCCAGGGATATGAATATGTCATTTTAAAGACAAGTTCCTAGAACTATTGAACTTGAG
GGTAATCTAGCCATCTTGGCCTTCCTTTGGCTCCTGCTGTTAGGAAGGGTGATATCTAGTCCCG
TTATGTCATTATGTCTCTGCTGGATCGGGACCACTGGGGCTCTTGTAATCAGTACTGAGGGGAG
CTCTGTTAGCTTATGTTCTTACATTGCCCCCATGTTTCCTGTCCGTCCCGTGCTTTACCAGTAG
ACCCCAATTCCCAGGAGATAAGTTATCATAGTTACTCTCTATTGCCGTGACAAAGCACCAGTGC
AAAATAGAAAAGGAAGTATTAATTGGGTTTGCTTTTGAGACAGTTAAGAATCCATGATGGCAGG
AACAACTGAGAGCTCACATCTTGATCTGCAAGTCGGAGGCAGAGAAAGAACCCTGGGAAACCCC
AGGGCCTGCCCCCCAGTGTCGTACTTGGTCTACAGTTTCTACCAACTGGGGGCCAAGTATTCAA
ACTTATGAGCCTATGGTTTATATTTTCATGTAAAGTGCCACATTCCACTCCCTAGTCACCATAG
GCTCTTGGCCATATTACAATGCAAAATGCATTTTAGCCCAACCTCAAAATTCCTCAGAGTCTTT
TTTTACTCTTGACATAATTTAAAGTCACAGTCTCTTCTGAACTCAAAGGAGTCTCATAATTGTA
ACCCCCTGAAAAAGCAAAAAAGCAAATTATACATTTCTAACACACAATGGCACAGAATATACAT
TACTATTCCAAAAAGTTATATTTCAGCAATAGTGAGAAAATTCTGAACCAACGCTCGACTGAAA
CCCAGCAGGGCAATTTACAAGTCCCGTAACTCCATGTCTATATCAAAGGGTTTATAGTTACCCT
TTTGGATTTGTTGACTGCAACATACTTTGCCTGATTCCATTTCTTGTGTGCAGCCCTCCCTGAC
AGATAGCACACGGTTCTGACGCCTCTGGCATTCATAGGTCCCAGTGCAACTCAGGCTTTACTTT
CACAGCTTCATGCAGTGGCCTCTTGGGGCTTCTTGCCCTCTCAGGGCCTTCATGCAGAAACTGC
CTCACAACCCATTCTGTGATATTAGTGACTCCTTAACTATGGAGAAAGATTCCACAGCCATGTA
TCCTCCCATGTATCCTTCATGACTCTAAGCCAGATGACATTGCTGAGTTCTGCATGCCTCACAT
GGAGCCTGACCTTGAGTCACTCCCAGTGGTGTTCATGTGTTGTTGCCTTTAGAAGCAGAGAATT
CCTTAGGCCTTTTCCTTTCATAAGTTGGAATCCTAACTGGGCGGAGCTTTATCCTGTTCATCCC
TCTTTATCTGGCTTCTCCTTAATCTCTATCTCTTTGAGCACATTAACTTCCCTGTGGGCTTTTC
TTGGAGATTTTTTATTGTAGTCCTGTATAAAAATGCTGCAGAGCCAGAATTAAGCTTTCCTGCA
ATTTCCTCTATCAAAGAAATTAGTCTCATTACTTTTCACTTCGGGCTTAGGCAGATTCTTGGGA
CAAGGGTAGAAGGCAGCTACATTCTTTGCCAAAAGAAAACAAGAGTAAGTCTTTAGCCAGTTAC
TAATGTTTTACCCCTAAGCCTCTTGCTCTAGCCCTCCACAGATCATACTCTCAGCAAGGCTGTC
TCCTAGGCTTCTACTGGACCCATTAAGCTCTGCTTACAGCCTTGAACCCTTTATTTTCTTAGTT
CAAAGTCCCAGAGTTTTCTACATTCCTCCAAAAAAAAAAAAAAAACCATATGGTTAGGTCTTTC
ACAGCTAAGATCCGCTTCCTGGTACCAGCTTCTGTGTCTTGGCTACTCTTCAATTGCTATGACA
AAGCACCTGACTAAGGCAGAGAATATAGGAAAGCATTTATAGGGTTTATAGTTTAAGAGGGTTT
TAGTTCATGATAGAAGAACAGTTGAGAACTTTTATCTTGATCTGCAAGTAGGATGCAAAAAGAA
AACTCCGGGAAGGGCATGTTCTTCTGAAACTTCAAAGCCTTCACCTTGTGACACACCTCCCCAA
CAAAGCCTTATCTCCTAGTCCTTTCCAAATAGTTCCTCCAACTGGGGACCAAATATTCCAACAT
GAGCGCTGGGGAGCATTCTCCTTCAAACCACTAGTTTCCCAAGGAGCTCTTTCCTAACCACATC
TTGTGCTTCCCCCAGTTGATGATTTCACTAGTTAACTTAGGTAGTTTTGCCTTTCTCAGTGGTC
ACATCTTCTGCTCATATTGAAGATCCTGCAGCTCCAGTTGGGCTTGATGTGCATTTTCTTTGAG
GAACTGATAACAGACATGTTTATCTGCATCTCCATGATAGTGAGAAAAAGTAGCTTCGAGGTAA
TCATAGCTGTTATCAGTCTCAGTCCCTAGTTGAGAATAGGCTGTGATCTACCTAGCCCTGGACT
CTAGTTATTTCCTAGACATGGACCTCCTGGGTGGAATTGGGTCATTAGGATGTTTAATTCCAAG
CATAACTTTCAAGATAGGATGCGTTATATAGTACATCAGTTTCATCTAAGGCTTTTCTTAATCT
TTAGGGGTAGAATTTAGCTGTTTTGCCATGACTGGCCTGGGCCTTACCCTATATCTCAGGCTGG
TCTTCTTTTCAGTGACCTTCCCGCTTTTGCCTCTCCATTGCTGGAATTCTAGGCATGTGATGAC
TAAATTTCTTATTTTAAGTCATTTAAGTTAGGTTTTGTTATGCTATTTTGGACAAAAAGTGCAG
AGCAGAGATGATAGATTATTAGAACAGTCTCCAGGGCCTCACTGTTACTGCGTTCCTCACAGGG
GCCTTCATGATTGATGATGTGCTTCAGTTTACTGCTGTGTCAGGTGAGAGGGTCAGAGCAAGGC
TCCACACAGGTTACTGCCTCCCTGGCCTACTTAGGACACAGTAGATTCATGATCGAGGGCTGGA
ACTGGTAGATTAGAGCAGCCAGACTGGCCCTTCCCTGCCACAGGATTGTATAATAGAACATGGC
ACCACCAGGCATTTGTGACCGTGGATGTGTTCATTATTTATGTATATTTAGATGTGTGTGATAC
TTGGCATGGTTTGAAAGAATTTATTCTGAAAGCCAGGATCATTTTAATCTTTGTGTGTCAATTC
AGTGTAATGTTGGGGCCTTTGAAAAGTTGATTAAGAAATTAGGGAACATTCCCAGTTCCTTCAT
GTTACCTGTTTAGTTCTCTCTGGAAAGGAAGACACTTGGACCAGCTGTTCGGCTGTTTTGTTTT
GTTCTGTTTCCATGATATTCTATGAATCTCCATGGCTTTAGATACTGTGACTTATTTTCCCTTT
AGCCCAAATTGTTGATTCAGTCTTAAGAATACTATTTTTTGATGCCCCTTGTGTGTGCACACTG
TCTAGATTGATGCTACCTTTGCTAAAAATGTCGTAAGATAAAGAACTAGCTGTTTAGAACCTGC
ACTTCAAAGATAAACCGGGAAGCTGCCCTCTGTGCCAAAAGTAAAGTGTACAATGTTTACAGAT
GGGTGACGTTTGCACTGCCATAGGGAATGGTGAGACTATGTTACCAGACCCTTAGATTTATGAG
TAGGTGGTTGCAGTTAAGCCTATGAGAGGATCTGTTGAGCCTTTTAAGGCTAAGCTGGTAAGAG
TTCCGAGACAGGTGGTTGGTTAGAGTGATTTCCTAGACCTCACTTGGGTCTTTCTGTTGACAGT
TCTTCATGGCTTCAAGCAGATACCATATGCTTTCTTTAGAGGAGCTGCCAGCCCTCCCTCCTGT
GAGAGATTGTCGCGTAGACATTTTGAAATCTTTCGATGTAATGTGCAATCCCAAGTAATGCCAT
TATTGGTGAATGTAGCATTGTTAAACTCTTGCTGTAGGTTATTTCTGATCTTCCCTTGATAGCC
TTCTTTTTTTTGTTTTTTTGTGTTTGTTTTGTTTTCAGAGACTAAAGTCTCACTATTTGGTTGA
CCTAGAACTTGCTTTATGACTAGGCTGTCCCCAAACTCACAGAGATCTGCCTTTCTGCCACCAT
GCCCATCCTCAGTAGTTTTCTGAATGACCGATGTCACAGAAAGTGATCTCACATCTGTGGTGTT
GCTTTCCCAGTTTATGTCATTGCATAGGCACAGCACAGTAGAATCCCGTTTCTTAGACTGGAGG
AGTCCGAGATAAGCTAAAAAGGCTAGTAGTTCCTTCAGTGGTTTTAGAGCTTGGCAGATGCTTT
ACTGAAGATCAGCATTGTGTTGTGACTCTTGAGGGCCAATATGAGCATTTAATTTGTTACCCAA
AGGTGCTTTGTATTTTTAAACAGCAAGTACTTTGATGTGTGTAGACATTTCCCTTCGTTTTCCC
TCCCTCCCTCCCCATTGCGTTTGAACATTGTTTATGCCAGAGGCCATCTGTCACTCTGGGTGTT
TAGAAGTGCAGTATACTTAAGTAGGGTCCTTCTTCAGCCTGTCCTGAGCAGTGTTGTGGTTACA
GAGTGGGACCATGAGCTCTCTCAGAGAGGAGGGAAGCTGTGAGGGCAAGCTGGCTTCCTTTGTG
GGGGTGTTGGGGTTTGTTTGAGCACTAAGGAATTTGAGGTCAGTCTTCCCCCTCTTCCTGCCCA
TAGTTTTCACTTTCCTTTCAGTAAGAACCACCCCTTAAAAGAAAACAGGAGGAGATGCAGTGCT
TTTGGCCTTAGCCAGCAGCTTGGGGCCTACTCTGGAAGTTGTAAGCTACAGTTTTTCTTACCTG
TAAAGCCAGCACACACACCTACCTACCCTTCTACCTCAGTTTATTGTGGAGACTATGGAGGAGC
AACTCTTAACAACTCTGACTGCCTTGAAGGTGGAGGAAGCTTGTAGTCTTGGTCAACTGTGCTC
TGAGGTTTATATTGAGAATTCTTTATGTTCTGGAAGTGTTTACTTCTCCTTGATGCCTGCTTAG
TAGAACCTGCATTGTTTGCTGTAAGTCTCTGCTCACCTGCTCGTCCTTTCCTTGGCACCAGGCT
CTTGATTAGGAAGAGTCATCTCCAGATGCTTTGAGAAGCACATGTAAGTTTCCGTAGCACACTC
TGCTGATGGAGCGCTTGCTCTTCTGTGGGCTTGCTGTGTAGGAACTGGTTCTGCATACACTTGA
GTAGCTGGCATAAGATGCCCTGCTGCTGGTGTGCAGGAGGAGGTTTCATGGCATTCCCAGTCTG
GTGCTTGCCAGTGCAGGAGCAAACGAGGGTAATAAACTGAGAAGAACGGCAGCTTACTAACGAG
GCCAGAGGGAAATGTTTCCGTGTGTCCTTGTGTAACTTTTTACAGCGCCACTAAGTTAATAGCC
CTGTACCTGGGTGTTTGCACTATGTAATGCTTCTAATGCCTTTTTATTGTGTTTTTGTGTGATT
AAACAATTTTCATTTCA

hide sequence

RefSeq Acc Id:

XM_039090700 ⟹ XP_038946628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,068,238 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,516,164 (-)	NCBI

RefSeq Acc Id:

XM_039090702 ⟹ XP_038946630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,068,241 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,516,165 (-)	NCBI

RefSeq Acc Id:

XM_039090703 ⟹ XP_038946631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,474,285 (-)	NCBI

RefSeq Acc Id:

XM_039090705 ⟹ XP_038946633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,474,285 (-)	NCBI

RefSeq Acc Id:

XM_039090706 ⟹ XP_038946634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,009,274 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,454,280 (-)	NCBI

RefSeq Acc Id:

XM_039090708 ⟹ XP_038946636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,990,699 - 47,026,367 (-)	NCBI
mRatBN7.2	13	44,432,596 - 44,474,285 (-)	NCBI

RefSeq Acc Id:

XM_063272288 ⟹ XP_063128358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI

RefSeq Acc Id:

XM_063272289 ⟹ XP_063128359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,984,681 - 47,026,367 (-)	NCBI

RefSeq Acc Id:

XM_063272291 ⟹ XP_063128361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,922,236 - 47,026,367 (-)	NCBI

RefSeq Acc Id:

XM_063272292 ⟹ XP_063128362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,996,729 - 47,026,367 (-)	NCBI

RefSeq Acc Id:

XM_063272293 ⟹ XP_063128363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,001,794 - 47,026,367 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012026	(Get FASTA)	NCBI Sequence Viewer
	XP_006249839	(Get FASTA)	NCBI Sequence Viewer
	XP_006249840	(Get FASTA)	NCBI Sequence Viewer
	XP_006249841	(Get FASTA)	NCBI Sequence Viewer
	XP_038946628	(Get FASTA)	NCBI Sequence Viewer
	XP_038946630	(Get FASTA)	NCBI Sequence Viewer
	XP_038946631	(Get FASTA)	NCBI Sequence Viewer
	XP_038946633	(Get FASTA)	NCBI Sequence Viewer
	XP_038946634	(Get FASTA)	NCBI Sequence Viewer
	XP_038946636	(Get FASTA)	NCBI Sequence Viewer
	XP_063128358	(Get FASTA)	NCBI Sequence Viewer
	XP_063128359	(Get FASTA)	NCBI Sequence Viewer
	XP_063128361	(Get FASTA)	NCBI Sequence Viewer
	XP_063128362	(Get FASTA)	NCBI Sequence Viewer
	XP_063128363	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83647	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012984
	ENSRNOP00000012984.6
	ENSRNOP00000076729
	ENSRNOP00000076729.1
	ENSRNOP00000084671
	ENSRNOP00000084671.1
GenBank Protein	Q5XIN1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012026 ⟸ NM_001012026

- UniProtKB:

Q5XIN1 (UniProtKB/Swiss-Prot), A6IC66 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSHSTSAQCSASDSACRISSEQINQQVRPKLQLLKILQAAGAQGEVFTMKEVMHYLGQYIMVK
QLYDQQEQHLVYCGGDLLGDLLGCQSFSVKDPSPLYDMLRKNLVTSASVNTDAAQTLALAQDHT
MDIPSQDRLKHGATECSNPRKRTEEDDTHTLPTSRRKCRDSRADEDLIEHLSQDETSRLDLDFE
EWDVAGLPWWFLGNLRNNYIPRSNGSTDLQTNQDIGTAIVSDTTDDLWFLNETVSEQLGVGVKV
EAANCEQPSEVGRTRDKKMVEGGKDDDLEDSKSLSDDTDVEVTSEDEWQCTECKKFNSPSKRYC
FRCWALRKDWYSDCSKLTHSLSTSNITAIPEKKDNEGIDVPDCRRTISAPVVRPKDGYLKEEKP
RFDPCNSVEFLDLAHGSESQEIISSTREQTDIFSEQKTETESMEDFQNVLKPCSLCEKRPRDGN
IIHGKTSHLTTCFHCARRLKKSGASCPACKKEIQLVIKVFIA

hide sequence

RefSeq Acc Id:	XP_006249841 ⟸ XM_006249779
- Peptide Label:	isoform X4
- UniProtKB:	A6IC66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSHSTSAQCSASDSACRISSEQINQVRPKLQLLKILQAAGAQGEVFTMKEVMHYLGQYIMVKQ LYDQQEQHLVYCGGDLLGDLLGCQSFSVKDPSPLYDMLRKNLVTSASVNTDAAQTLALAQDHTM DIPSQDRLKHGATECSNPRKRTEEDDTHTLPTSRRKCRDSRADEDLIEHLSQDETSRLDLDFEE WDVAGLPWWFLGNLRNNYIPRSNGSTDLQTNQMVEGGKDDDLEDSKSLSDDTDVEVTSEDEWQC TECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSNITAIPEKKDNEGIDVPDCRRTISAP VVRPKDGYLKEEKPRFDPCNSVEFLDLAHGSESQEIISSTREQTDIFSEQKTETESMEDFQNVL KPCSLCEKRPRDGNIIHGKTSHLTTCFHCARRLKKSGASCPACKKEIQLVIKVFIA hide sequence

RefSeq Acc Id:	XP_006249839 ⟸ XM_006249777
- Peptide Label:	isoform X2
- UniProtKB:	A6IC66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSHSTSAQCSASDSACRISSEQINQVRPKLQLLKILQAAGAQGEVFTMKEVMHYLGQYIMVKQ LYDQQEQHLVYCGGDLLGDLLGCQSFSVKDPSPLYDMLRKNLVTSASVNTDAAQTLALAQDHTM DIPSQDRLKHGATECSNPRKRTEEDDTHTLPTSRRKCRDSRADEDLIEHLSQDETSRLDLDFEE WDVAGLPWWFLGNLRNNYIPRSNGSTDLQTNQDIGTAIVSDTTDDLWFLNETVSEQLGVGVKVE AANCEQPSEVGRTRDKKMVEGGKDDDLEDSKSLSDDTDVEVTSEDEWQCTECKKFNSPSKRYCF RCWALRKDWYSDCSKLTHSLSTSNITAIPEKKDNEGIDVPDCRRTISAPVVRPKDGYLKEEKPR FDPCNSVEFLDLAHGSESQEIISSTREQTDIFSEQKTETESMEDFQNVLKPCSLCEKRPRDGNI IHGKTSHLTTCFHCARRLKKSGASCPACKKEIQLVIKVFIA hide sequence

RefSeq Acc Id:	XP_006249840 ⟸ XM_006249778
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A2G0 (UniProtKB/TrEMBL), A6IC66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSHSTSAQCSASDSACRISSEQINQQVRPKLQLLKILQAAGAQGEVFTMKEVMHYLGQYIMVK QLYDQQEQHLVYCGGDLLGDLLGCQSFSVKDPSPLYDMLRKNLVTSASVNTDAAQTLALAQDHT MDIPSQDRLKHGATECSNPRKRTEEDDTHTLPTSRRKCRDSRADEDLIEHLSQDETSRLDLDFE EWDVAGLPWWFLGNLRNNYIPRSNGSTDLQTNQMVEGGKDDDLEDSKSLSDDTDVEVTSEDEWQ CTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSNITAIPEKKDNEGIDVPDCRRTISA PVVRPKDGYLKEEKPRFDPCNSVEFLDLAHGSESQEIISSTREQTDIFSEQKTETESMEDFQNV LKPCSLCEKRPRDGNIIHGKTSHLTTCFHCARRLKKSGASCPACKKEIQLVIKVFIA hide sequence

RefSeq Acc Id:

ENSRNOP00000012984 ⟸ ENSRNOT00000012984

RefSeq Acc Id:	XP_038946630 ⟸ XM_039090702
- Peptide Label:	isoform X2
- UniProtKB:	A6IC66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946628 ⟸ XM_039090700
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q5T6 (UniProtKB/TrEMBL), A6IC66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946636 ⟸ XM_039090708
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038946631 ⟸ XM_039090703
- Peptide Label:	isoform X5
- UniProtKB:	A6IC66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946633 ⟸ XM_039090705
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZK52 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946634 ⟸ XM_039090706
- Peptide Label:	isoform X9

RefSeq Acc Id:

ENSRNOP00000084671 ⟸ ENSRNOT00000112527

RefSeq Acc Id:

ENSRNOP00000076729 ⟸ ENSRNOT00000116113

RefSeq Acc Id:	XP_063128361 ⟸ XM_063272291
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063128358 ⟸ XM_063272288
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063128359 ⟸ XM_063272289
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063128362 ⟸ XM_063272292
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063128363 ⟸ XM_063272293
- Peptide Label:	isoform X13

Protein Domains

DM2 RanBP2-type RING-type SWIB/MDM2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIN1-F1-model_v2	AlphaFold	Q5XIN1	1-490	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698818

Promoter ID:

EPDNEW_R9342

Type:

initiation region

Name:

Mdm4_1

Description:

MDM4, p53 regulator

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	49,828,737 - 49,828,797	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309306	AgrOrtholog
BioCyc Gene	G2FUF-18297	BioCyc
Ensembl Genes	ENSRNOG00000009696	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012984	ENTREZGENE
	ENSRNOT00000012984.6	UniProtKB/TrEMBL
	ENSRNOT00000112527.1	UniProtKB/TrEMBL
	ENSRNOT00000116113.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.245.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zn-finger domain of Sec23/24	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135053	IMAGE-MGC_LOAD
InterPro	MDM4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	p53_neg-reg_MDM_2/4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SWIB_MDM2_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SWIB_MDM2_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RanBP2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RanBP2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:304798	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94476	IMAGE-MGC_LOAD
NCBI Gene	304798	ENTREZGENE
PANTHER	MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN MDM4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SWIB	UniProtKB/TrEMBL
	zf-C3HC4_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-RanBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mdm4	PhenoGen
PIRSF	MDM4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	p53_MDM_2/4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SWIB_MDM2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_RANBP2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_RANBP2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009696	RatGTEx
Superfamily-SCOP	SSF47592	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF90209	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZK52	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2G0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q5T6	ENTREZGENE, UniProtKB/TrEMBL
	A6IC66	ENTREZGENE, UniProtKB/TrEMBL
	MDM4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Mdm4	MDM4 regulator of p53	Mdm4	MDM4, p53 regulator	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-03-07	Mdm4	MDM4, p53 regulator	Mdm4	Mdm4 p53 binding protein homolog (mouse)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-24	Mdm4	Mdm4 p53 binding protein homolog (mouse)	Mdm4	transformed mouse 3T3 cell double minute 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Mdm4	transformed mouse 3T3 cell double minute 4	Mdm4_predicted	transformed mouse 3T3 cell double minute 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mdm4_predicted	transformed mouse 3T3 cell double minute 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)