Recql (RecQ like helicase) - Rat Genome Database

Name: Recql
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Recql (RecQ like helicase) Rattus norvegicus

Analyze

Symbol:

Recql

Name:

RecQ like helicase

RGD ID:

1311071

Description:

Predicted to enable DNA helicase activity and DNA/DNA annealing activity. Predicted to be involved in DNA unwinding involved in DNA replication; double-strand break repair via homologous recombination; and replication fork processing. Predicted to be located in nucleoplasm. Predicted to be active in chromosome and cytoplasm. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and pancreatic cancer. Orthologous to human RECQL (RecQ like helicase); INTERACTS WITH 2,6-dinitrotoluene; acrylamide; allethrin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ATP-dependent DNA helicase Q1; DNA-dependent ATPase Q1; LOC312824; RecQ helicase-like; RecQ protein-like; RecQ protein-like (DNA helicase Q1-like); recQ protein-like 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RECQL (RecQ like helicase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Recql (RecQ protein-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Recql (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RECQL (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RECQL (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Recql (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RECQL (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RECQL (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Recql (RecQ like helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PGM2L1 (phosphoglucomutase 2 like 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RECQL (RecQ like helicase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Recql (RecQ protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	recql (RecQ helicase-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K02F3.12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	recql	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI		GRCr8
mRatBN7.2	4	175,308,337 - 175,332,965 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	175,304,117 - 175,332,945 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	181,603,185 - 181,627,672 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	177,387,454 - 177,411,941 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	176,008,012 - 176,032,500 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	176,581,892 - 176,606,520 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	176,581,897 - 176,606,382 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	179,927,255 - 179,951,742 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	180,172,380 - 180,196,866 (-)	NCBI
Celera	4	163,841,046 - 163,865,533 (-)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

Breast Neoplasms (ISO)

cancer (ISO)

dilated cardiomyopathy 1O (ISO)

Dwarfism (ISO)

epilepsy (ISO)

genetic disease (ISO)

hepatoblastoma (ISO)

hepatocellular carcinoma (ISO)

hereditary breast ovarian cancer syndrome (ISO)

Hereditary Neoplastic Syndromes (ISO)

lung cancer (ISO)

pancreatic cancer (ISO)

RECON PROGEROID SYNDROME (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

allethrin (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

clofibric acid (EXP)

cocaine (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dibenz[a,h]anthracene (ISO)

dicrotophos (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenvalerate (EXP)

flutamide (EXP)

FR900359 (ISO)

glafenine (EXP)

ivermectin (ISO)

ketamine (EXP)

kojic acid (ISO)

levonorgestrel (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monosodium L-glutamate (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

paracetamol (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

piroxicam (ISO)

propanal (ISO)

pyrethrins (EXP)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

selenium atom (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

Testosterone propionate (ISO)

testosterone undecanoate (ISO)

thapsigargin (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA duplex unwinding (IEA)

DNA geometric change (IEA)

DNA recombination (IEA)

DNA replication (IEA)

DNA unwinding involved in DNA replication (IBA,IEA)

double-strand break repair via homologous recombination (IBA,IEA)

replication fork processing (IEA,ISO,ISS)

Cellular Component

chromosome (IBA,IEA)

cytoplasm (IBA,IEA)

mediator complex (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO,ISS)

Molecular Function

3'-5' DNA helicase activity (IBA,IEA,ISO,ISS)

ATP binding (IEA)

ATP hydrolysis activity (IEA)

DNA helicase activity (ISO)

DNA/DNA annealing activity (IEA,ISO)

double-stranded DNA helicase activity (IEA,ISO,ISS)

four-way junction helicase activity (IBA,IEA)

helicase activity (IEA)

hydrolase activity (IEA)

isomerase activity (IEA)

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Single nucleotide polymorphism in RECQL and survival in resectable pancreatic adenocarcinoma.	Cotton RT, etal., HPB (Oxford). 2009;11(5):435-44.
2.	Anticancer activity of RecQL1 helicase siRNA in mouse xenograft models.	Futami K, etal., Cancer Sci. 2008 Jun;99(6):1227-36. Epub 2008 Apr 14.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Significant effect of homologous recombination DNA repair gene polymorphisms on pancreatic cancer survival.	Li D, etal., Cancer Res. 2006 Mar 15;66(6):3323-30.
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11562355	PMID:12477932	PMID:15489334	PMID:19177149	PMID:19946888

Genomics

Comparative Map Data

Recql
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI		GRCr8
mRatBN7.2	4	175,308,337 - 175,332,965 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	175,304,117 - 175,332,945 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	181,603,185 - 181,627,672 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	177,387,454 - 177,411,941 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	176,008,012 - 176,032,500 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	176,581,892 - 176,606,520 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	176,581,897 - 176,606,382 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	179,927,255 - 179,951,742 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	180,172,380 - 180,196,866 (-)	NCBI
Celera	4	163,841,046 - 163,865,533 (-)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

RECQL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	21,468,910 - 21,501,635 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	21,468,910 - 21,501,669 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	21,621,844 - 21,654,569 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	21,513,965 - 21,545,796 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	21,514,353 - 21,545,796	NCBI
Celera	12	26,777,229 - 26,809,985 (-)	NCBI		Celera
Cytogenetic Map	12	p12.1	NCBI
HuRef	12	21,395,874 - 21,428,641 (-)	NCBI		HuRef
CHM1_1	12	21,587,472 - 21,620,203 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	21,347,594 - 21,380,648 (-)	NCBI		T2T-CHM13v2.0

Recql
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	142,296,068 - 142,332,802 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	142,296,068 - 142,332,813 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	142,350,342 - 142,387,100 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	142,350,342 - 142,387,087 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	142,310,420 - 142,335,607 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	142,319,368 - 142,344,253 (-)	NCBI		MGSCv36	mm8
Celera	6	145,421,861 - 145,447,035 (-)	NCBI		Celera
Cytogenetic Map	6	G2	NCBI
cM Map	6	73.91	NCBI

Recql
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	17,113,408 - 17,148,708 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	17,115,443 - 17,148,708 (-)	NCBI	ChiLan1.0	ChiLan1.0

RECQL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	75,300,616 - 75,333,274 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	75,297,014 - 75,329,247 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	64,796,383 - 64,829,165 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	67,400,315 - 67,432,724 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	67,400,315 - 67,432,724 (+)	Ensembl	panpan1.1		panPan2

RECQL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	25,590,326 - 25,636,304 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	25,590,831 - 25,636,685 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	20,715,583 - 20,761,524 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	25,818,962 - 25,865,150 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	25,819,030 - 25,865,148 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	25,611,850 - 25,658,034 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	25,634,863 - 25,681,036 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	20,891,461 - 20,937,671 (-)	NCBI		UU_Cfam_GSD_1.0

Recql
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	87,426,992 - 87,463,355 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936548	5,362,517 - 5,384,338 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936548	5,349,878 - 5,384,603 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RECQL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	51,953,451 - 52,003,740 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	51,953,460 - 51,995,619 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	55,229,615 - 55,272,155 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RECQL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	21,334,601 - 21,366,943 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	21,331,584 - 21,366,979 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	13,777,790 - 13,810,627 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Recql
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	17,185,129 - 17,220,707 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	17,183,624 - 17,220,954 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Recql
48 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	71
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000065576
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat

Markers in Region

RH130945

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	175,308,472 - 175,308,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	176,582,028 - 176,582,219	NCBI	Rnor6.0
Rnor_5.0	4	240,795,811 - 240,796,002	UniSTS	Rnor5.0
RGSC_v3.4	4	179,927,388 - 179,927,579	UniSTS	RGSC3.4
Celera	4	163,841,179 - 163,841,370	UniSTS
RH 3.4 Map	4	1031.2	UniSTS
Cytogenetic Map	4	q44	UniSTS

BI295118

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	175,317,447 - 175,317,546 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	176,591,002 - 176,591,100	NCBI	Rnor6.0
Rnor_5.0	4	240,804,785 - 240,804,883	UniSTS	Rnor5.0
RGSC_v3.4	4	179,936,362 - 179,936,460	UniSTS	RGSC3.4
Celera	4	163,850,153 - 163,850,251	UniSTS
RH 3.4 Map	4	1044.7	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH141072

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	175,310,780 - 175,310,971 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	176,584,336 - 176,584,526	NCBI	Rnor6.0
Rnor_5.0	4	240,798,119 - 240,798,309	UniSTS	Rnor5.0
RGSC_v3.4	4	179,929,696 - 179,929,886	UniSTS	RGSC3.4
Celera	4	163,843,487 - 163,843,677	UniSTS
RH 3.4 Map	4	1032.2	UniSTS
Cytogenetic Map	4	q44	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	47	31	19	31	2	3	74	35	41	11	2
Low		6	10	10		10	6	8					6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000065576 ⟹ ENSRNOP00000060671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	175,308,342 - 175,332,828 (-)	Ensembl
Rnor_6.0 Ensembl	4	176,581,897 - 176,606,382 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086365 ⟹ ENSRNOP00000073537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	175,309,759 - 175,322,961 (-)	Ensembl
Rnor_6.0 Ensembl	4	176,582,006 - 176,596,591 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110058 ⟹ ENSRNOP00000077921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	175,308,344 - 175,332,945 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114762 ⟹ ENSRNOP00000085782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	175,304,117 - 175,332,917 (-)	Ensembl

RefSeq Acc Id:

NM_001012098 ⟹ NP_001012098

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,838 (-)	NCBI
mRatBN7.2	4	175,308,340 - 175,332,828 (-)	NCBI
Rnor_6.0	4	176,581,895 - 176,606,382 (-)	NCBI
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI
RGSC_v3.4	4	179,927,255 - 179,951,742 (-)	RGD
Celera	4	163,841,046 - 163,865,533 (-)	RGD

Sequence:

show sequence

CGGGGGGTTTAGGAGCCGGGCGCCTCTGCCGTCTGCCGACGGTTTCAGGAGCCCTGGCCGCCGC
GGCATGTGCTTCTGCCTCCTGTGGAGCCGGCGCGGTGGAGGGATGCGCTCAGGGGCCCCTGCCG
ACCTCGACAGTACTGCTGGTGGACATGTTACCATATTTGTTCTCTCACTTCAGAAGGACGTTTG
GATCTCCGGTTCAGTTTTAGAATGGCTTCCATCCCAGCTCTAACGGATGAACTGGAGTCTGTGT
CCAGTGAGCTCCATGCAGTTGACATCCAGATTCAAGAACTTACAGAGAGGCAGCACGAGCTCCT
TCAGAGAAAGTCAGTCCTGACAAAGAGAATCAAGCAGTGCTTAGAGGACTCTGCTGCCGAGGCG
AGCGGCGACTGTGACACGTCTCCAGCTGCATGGAGTAAAGAAGATTTCCCATGGTCCGGAAAGG
TAAAACATGTGCTGCGAGATGTGTTTAAACTGCAGAAGTTCAGACCTCTGCAGCTGGAGACTGT
CAATGCCACCATGGCGAGAAAGGACATCTTTCTTGTCATGCCCACAGGAGGAGGGAAGAGCTTG
TGCTACCAGCTGCCAGCGCTGTGCTCAGACGGTTTTACACTGGTGATTTGTCCACTCATCTCTC
TTATGGAAGATCAGCTGATGGTTTTACAACAGTTGGGGATTTCAGCTACTATGTTGAATTCTTC
TAGCTCTAAGGAACATGTAAAATGTGTGCACACTGAAATGATGAATAAAAACTCCCACTTAAAG
CTGATTTATGTGACTCCAGAGAAAATTGCAAAAAGCAAGATGTTCATGTCGAGGCTAGAGAAAG
CCTATGAGGCCGGGAGACTGACTGGAGTGGCGGTGGATGAAGTGCATTGCTGCAGTCAGTGGGG
ACATGACTTCAGGCCGGATTACAAAGCACTCGGCATCTTGAAGCGCCAGTTTCCCAACATCTCA
CTGATTGGGCTGACAGCAACAGCAACCAACCATGTTTTGAAGGATGCACAGAAAATCCTATGTG
TGGAGAAATGTTTGACATTTACAGCGTCTTTCAACAGACCAAATCTCTACTATGAGGTTCGGCA
GAAGCCCTCGAGTGCTGAAGACTTTATCGAAAACATTGCAAACCTTATTAATGGACGGTACAAA
GGAAAGTCAGGAATCATATACTGTTTTTCTCAGAAAGACTCTGAACAAGTCACCATTAGCTTAC
AGAAGCTGGGGGTCCGTGCAGGCACTTACCATGCCAACATGGAGCCGGAGGACAGGACCAAGGT
TCACACGCAGTGGTCAGCCAATGAGCTTCAGGTGGTAGTGGCAACAGTCGCATTTGGCATGGGA
ATTGATAAGCCTGACGTGAGGTTTGTCATCCATCATTCAATGAGCAAATCCATGGAGAATTACT
ACCAAGAGAGTGGGCGTGCCGGTCGAGATGACTGGAGAGCAGACTGTATTCTGTATTACGGCTT
CGGAGACATATTCAGGATCAGCTCGATGGTGGTCATGGAGAATGTGGGACAGCAGAAGCTGTAT
GAGATGGTGTCATACTGCCAGAATATCAGCAAGTGTCGCCGTGCGTTAATAGCCCAACATTTTG
ATGAAGTGTGGAATGCAGACGCCTGTAACAAAATGTGTGACAACTGCTGTAAAGACGACTCGTT
TGAGAAAAAGAATATAACCGAGCACTGCCAAGCCCTGATCAAGATTCTGAAGCAGGCAGAAGGA
CTGAATGAAAAGCTCACCCCACTGAAGCTGATTGATGCTTGGATGGGAAAGGGAGCAGCCAAGT
TCAGAGTGGCTGGCGTTGCTGTCCCAGCCCTTCCCCGAGAAGACCTGGAGAAAATCATCGTACA
TGCTCTCCTGCAGCAGTATCTCAAGGAAGACTACAGCTTCACGGCTTATGCTACCATCTCGTAT
CTGAAGGTGGGACCCAGAGCTAGTCTTCTTAGCAACGAAGGCCATGCTGTCACTATGCAAGTGA
AGAGGTCCACACAGAGCAGCGTTAGGGCTGCGTCACCTGAAGCTTGTGAAGTGGATTCAAAGGG
GAAAGAAAAGAGCTCAGCAGTACTATGCTGACATGGGCTCACCTTTCCAAGTGGGTGACATTTT
AAGCTGAGCAATGTGGATGACTTCTGGTGAGAAAAGCTGCTGTTCTTGTTCAGATAGAAACAGT
AAGTCGACAGTAATGAATGTATCAGCAAGAAGGCTCTGCACAATCTGCACTCTGATCTAAGTAA
ACCGAGACAGCAAGCCTCCTGAAACCCCAGCCTTACTATGATGTTCAGGCAAACAAAGGATCTG
GTGCTTTGTATGAGTCAAGGTTTATTGTCAACTGTGTACTAGGAGTGTTCATCTGCAAATCAGT
CATTAAATGGATCCATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237617 ⟹ XP_006237679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,965 (-)	NCBI
Rnor_6.0	4	176,581,892 - 176,606,515 (-)	NCBI
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI

Sequence:

show sequence

CTTGTGATTGGTGGAGGGGGCTGATCCGGAAGGGTGGGCGCTGCGGGCGAGGCGGCGGGAAGGT
TTTTACACGCGGAACAGCTGACAGGGCCCCTGCCGACCTCGACAGTACTGCTGGTGGACATGTT
ACCATATTTGTTCTCTCACTTCAGAAGGACGTTTGGATCTCCGGTTCAGTTTTAGAATGGCTTC
CATCCCAGCTCTAACGGATGAACTGGAGTCTGTGTCCAGTGAGCTCCATGCAGTTGACATCCAG
ATTCAAGAACTTACAGAGAGGCAGCACGAGCTCCTTCAGAGAAAGTCAGTCCTGACAAAGAGAA
TCAAGCAGTGCTTAGAGGACTCTGCTGCCGAGGCGAGCGGCGACTGTGACACGTCTCCAGCTGC
ATGGAGTAAAGAAGATTTCCCATGGTCCGGAAAGGTAAAACATGTGCTGCGAGATGTGTTTAAA
CTGCAGAAGTTCAGACCTCTGCAGCTGGAGACTGTCAATGCCACCATGGCGAGAAAGGACATCT
TTCTTGTCATGCCCACAGGAGGAGGGAAGAGCTTGTGCTACCAGCTGCCAGCGCTGTGCTCAGA
CGGTTTTACACTGGTGATTTGTCCACTCATCTCTCTTATGGAAGATCAGCTGATGGTTTTACAA
CAGTTGGGGATTTCAGCTACTATGTTGAATTCTTCTAGCTCTAAGGAACATGTAAAATGTGTGC
ACACTGAAATGATGAATAAAAACTCCCACTTAAAGCTGATTTATGTGACTCCAGAGAAAATTGC
AAAAAGCAAGATGTTCATGTCGAGGCTAGAGAAAGCCTATGAGGCCGGGAGACTGACTGGAGTG
GCGGTGGATGAAGTGCATTGCTGCAGTCAGTGGGGACATGACTTCAGGCCGGATTACAAAGCAC
TCGGCATCTTGAAGCGCCAGTTTCCCAACATCTCACTGATTGGGCTGACAGCAACAGCAACCAA
CCATGTTTTGAAGGATGCACAGAAAATCCTATGTGTGGAGAAATGTTTGACATTTACAGCGTCT
TTCAACAGACCAAATCTCTACTATGAGGTTCGGCAGAAGCCCTCGAGTGCTGAAGACTTTATCG
AAAACATTGCAAACCTTATTAATGGACGGTACAAAGGAAAGTCAGGAATCATATACTGTTTTTC
TCAGAAAGACTCTGAACAAGTCACCATTAGCTTACAGAAGCTGGGGGTCCGTGCAGGCACTTAC
CATGCCAACATGGAGCCGGAGGACAGGACCAAGGTTCACACGCAGTGGTCAGCCAATGAGCTTC
AGGTGGTAGTGGCAACAGTCGCATTTGGCATGGGAATTGATAAGCCTGACGTGAGGTTTGTCAT
CCATCATTCAATGAGCAAATCCATGGAGAATTACTACCAAGAGAGTGGGCGTGCCGGTCGAGAT
GACTGGAGAGCAGACTGTATTCTGTATTACGGCTTCGGAGACATATTCAGGATCAGCTCGATGG
TGGTCATGGAGAATGTGGGACAGCAGAAGCTGTATGAGATGGTGTCATACTGCCAGAATATCAG
CAAGTGTCGCCGTGCGTTAATAGCCCAACATTTTGATGAAGTGTGGAATGCAGACGCCTGTAAC
AAAATGTGTGACAACTGCTGTAAAGACGACTCGTTTGAGAAAAAGAATATAACCGAGCACTGCC
AAGCCCTGATCAAGATTCTGAAGCAGGCAGAAGGACTGAATGAAAAGCTCACCCCACTGAAGCT
GATTGATGCTTGGATGGGAAAGGGAGCAGCCAAGTTCAGAGTGGCTGGCGTTGCTGTCCCAGCC
CTTCCCCGAGAAGACCTGGAGAAAATCATCGTACATGCTCTCCTGCAGCAGTATCTCAAGGAAG
ACTACAGCTTCACGGCTTATGCTACCATCTCGTATCTGAAGGTGGGACCCAGAGCTAGTCTTCT
TAGCAACGAAGGCCATGCTGTCACTATGCAAGTGAAGAGGTCCACACAGAGCAGCGTTAGGGCT
GCGTCACCTGAAGCTTGTGAAGTGGATTCAAAGGGGAAAGAAAAGAGCTCAGGTAACTTCCAGA
AGTCTAAAAACAGGCTTCAGCCATCTGGCTCTAAGAACACAGGCGCTAAGAAAAGAAAACTTCA
TGATGCTTGAGTGTTACTTAATCTGACACAATGTAACTGCTTATGTGTGTTTATGTGTGGGTCA
CTTTTATAATCAGCTATAATTTTTGAAACAACTTTATGTTTTATACATATAAAGCTGTTATTTT
CAGAGCTTACTTACATAATAATGAGAAGTACAACTTTCATGTAAAGTTGTCTAAACATGATATA
TCTGACATTAAGTCCACGTAGCTTTTGTAAGCCCATTTGCCTTGCTGTAACTAGCTGTTATCTT
CTGACGTGACTCTCCTTTAAAGCAGTACTATGCTGACATGGGCTCACCTTTCCAAGTGGGTGAC
ATTTTAAGCTGAGCAATGTGGATGACTTCTGGTGAGAAAAGCTGCTGTTCTTGTTCAGATAGAA
ACAGTAAGTCGACAGTAATGAATGTATCAGCAAGAAGGCTCTGCACAATCTGCACTCTGATCTA
AGTAAACCGAGACAGCAAGCCTCCTGAAACCCCAGCCTTACTATGATGTTCAGGCAAACAAAGG
ATCTGGTGCTTTGTATGAGTCAAGGTTTATTGTCAACTGTGTACTAGGAGTGTTCATCTGCAAA
TCAGTCATTAAATGGATCCATCCTAAGGA

hide sequence

RefSeq Acc Id:

XM_006237618 ⟹ XP_006237680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,891 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,867 (-)	NCBI
Rnor_6.0	4	176,581,892 - 176,606,421 (-)	NCBI
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI

Sequence:

show sequence

GGCTGCGCCCGTTTCGGCGCGTGGGGCTGCGGCTGTCTTCGGGGGGTTTAGGAGCCGGGCGCCT
CTGCCGTCTGCCGACGGTTTCAGGAGCCCTGGCCGCCGCGGCATGTGCTTCTGCCTCCTGTGGA
GCCGGCGCGGTGGAGGGATGCGCTCAGGAAGGACGTTTGGATCTCCGGTTCAGTTTTAGAATGG
CTTCCATCCCAGCTCTAACGGATGAACTGGAGTCTGTGTCCAGTGAGCTCCATGCAGTTGACAT
CCAGATTCAAGAACTTACAGAGAGGCAGCACGAGCTCCTTCAGAGAAAGTCAGTCCTGACAAAG
AGAATCAAGCAGTGCTTAGAGGACTCTGCTGCCGAGGCGAGCGGCGACTGTGACACGTCTCCAG
CTGCATGGAGTAAAGAAGATTTCCCATGGTCCGGAAAGGTAAAACATGTGCTGCGAGATGTGTT
TAAACTGCAGAAGTTCAGACCTCTGCAGCTGGAGACTGTCAATGCCACCATGGCGAGAAAGGAC
ATCTTTCTTGTCATGCCCACAGGAGGAGGGAAGAGCTTGTGCTACCAGCTGCCAGCGCTGTGCT
CAGACGGTTTTACACTGGTGATTTGTCCACTCATCTCTCTTATGGAAGATCAGCTGATGGTTTT
ACAACAGTTGGGGATTTCAGCTACTATGTTGAATTCTTCTAGCTCTAAGGAACATGTAAAATGT
GTGCACACTGAAATGATGAATAAAAACTCCCACTTAAAGCTGATTTATGTGACTCCAGAGAAAA
TTGCAAAAAGCAAGATGTTCATGTCGAGGCTAGAGAAAGCCTATGAGGCCGGGAGACTGACTGG
AGTGGCGGTGGATGAAGTGCATTGCTGCAGTCAGTGGGGACATGACTTCAGGCCGGATTACAAA
GCACTCGGCATCTTGAAGCGCCAGTTTCCCAACATCTCACTGATTGGGCTGACAGCAACAGCAA
CCAACCATGTTTTGAAGGATGCACAGAAAATCCTATGTGTGGAGAAATGTTTGACATTTACAGC
GTCTTTCAACAGACCAAATCTCTACTATGAGGTTCGGCAGAAGCCCTCGAGTGCTGAAGACTTT
ATCGAAAACATTGCAAACCTTATTAATGGACGGTACAAAGGAAAGTCAGGAATCATATACTGTT
TTTCTCAGAAAGACTCTGAACAAGTCACCATTAGCTTACAGAAGCTGGGGGTCCGTGCAGGCAC
TTACCATGCCAACATGGAGCCGGAGGACAGGACCAAGGTTCACACGCAGTGGTCAGCCAATGAG
CTTCAGGTGGTAGTGGCAACAGTCGCATTTGGCATGGGAATTGATAAGCCTGACGTGAGGTTTG
TCATCCATCATTCAATGAGCAAATCCATGGAGAATTACTACCAAGAGAGTGGGCGTGCCGGTCG
AGATGACTGGAGAGCAGACTGTATTCTGTATTACGGCTTCGGAGACATATTCAGGATCAGCTCG
ATGGTGGTCATGGAGAATGTGGGACAGCAGAAGCTGTATGAGATGGTGTCATACTGCCAGAATA
TCAGCAAGTGTCGCCGTGCGTTAATAGCCCAACATTTTGATGAAGTGTGGAATGCAGACGCCTG
TAACAAAATGTGTGACAACTGCTGTAAAGACGACTCGTTTGAGAAAAAGAATATAACCGAGCAC
TGCCAAGCCCTGATCAAGATTCTGAAGCAGGCAGAAGGACTGAATGAAAAGCTCACCCCACTGA
AGCTGATTGATGCTTGGATGGGAAAGGGAGCAGCCAAGTTCAGAGTGGCTGGCGTTGCTGTCCC
AGCCCTTCCCCGAGAAGACCTGGAGAAAATCATCGTACATGCTCTCCTGCAGCAGTATCTCAAG
GAAGACTACAGCTTCACGGCTTATGCTACCATCTCGTATCTGAAGGTGGGACCCAGAGCTAGTC
TTCTTAGCAACGAAGGCCATGCTGTCACTATGCAAGTGAAGAGGTCCACACAGAGCAGCGTTAG
GGCTGCGTCACCTGAAGCTTGTGAAGTGGATTCAAAGGGGAAAGAAAAGAGCTCAGGTAACTTC
CAGAAGTCTAAAAACAGGCTTCAGCCATCTGGCTCTAAGAACACAGGCGCTAAGAAAAGAAAAC
TTCATGATGCTTGAGTGTTACTTAATCTGACACAATGTAACTGCTTATGTGTGTTTATGTGTGG
GTCACTTTTATAATCAGCTATAATTTTTGAAACAACTTTATGTTTTATACATATAAAGCTGTTA
TTTTCAGAGCTTACTTACATAATAATGAGAAGTACAACTTTCATGTAAAGTTGTCTAAACATGA
TATATCTGACATTAAGTCCACGTAGCTTTTGTAAGCCCATTTGCCTTGCTGTAACTAGCTGTTA
TCTTCTGACGTGACTCTCCTTTAAAGCAGTACTATGCTGACATGGGCTCACCTTTCCAAGTGGG
TGACATTTTAAGCTGAGCAATGTGGATGACTTCTGGTGAGAAAAGCTGCTGTTCTTGTTCAGAT
AGAAACAGTAAGTCGACAGTAATGAATGTATCAGCAAGAAGGCTCTGCACAATCTGCACTCTGA
TCTAAGTAAACCGAGACAGCAAGCCTCCTGAAACCCCAGCCTTACTATGATGTTCAGGCAAACA
AAGGATCTGGTGCTTTGTATGAGTCAAGGTTTATTGTCAACTGTGTACTAGGAGTGTTCATCTG
CAAATCAGTCATTAAATGGATCCATCCTAAGGA

hide sequence

RefSeq Acc Id:

XM_006237619 ⟹ XP_006237681

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,960 (-)	NCBI
Rnor_6.0	4	176,581,892 - 176,606,520 (-)	NCBI
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI

Sequence:

show sequence

AATGACTTGTGATTGGTGGAGGGGGCTGATCCGGAAGGGTGGGCGCTGCGGGCGAGGCGGCGGG
AAGGTTTTTACACGCGGAACAGCTGACAGAAGGACGTTTGGATCTCCGGTTCAGTTTTAGAATG
GCTTCCATCCCAGCTCTAACGGATGAACTGGAGTCTGTGTCCAGTGAGCTCCATGCAGTTGACA
TCCAGATTCAAGAACTTACAGAGAGGCAGCACGAGCTCCTTCAGAGAAAGTCAGTCCTGACAAA
GAGAATCAAGCAGTGCTTAGAGGACTCTGCTGCCGAGGCGAGCGGCGACTGTGACACGTCTCCA
GCTGCATGGAGTAAAGAAGATTTCCCATGGTCCGGAAAGGTAAAACATGTGCTGCGAGATGTGT
TTAAACTGCAGAAGTTCAGACCTCTGCAGCTGGAGACTGTCAATGCCACCATGGCGAGAAAGGA
CATCTTTCTTGTCATGCCCACAGGAGGAGGGAAGAGCTTGTGCTACCAGCTGCCAGCGCTGTGC
TCAGACGGTTTTACACTGGTGATTTGTCCACTCATCTCTCTTATGGAAGATCAGCTGATGGTTT
TACAACAGTTGGGGATTTCAGCTACTATGTTGAATTCTTCTAGCTCTAAGGAACATGTAAAATG
TGTGCACACTGAAATGATGAATAAAAACTCCCACTTAAAGCTGATTTATGTGACTCCAGAGAAA
ATTGCAAAAAGCAAGATGTTCATGTCGAGGCTAGAGAAAGCCTATGAGGCCGGGAGACTGACTG
GAGTGGCGGTGGATGAAGTGCATTGCTGCAGTCAGTGGGGACATGACTTCAGGCCGGATTACAA
AGCACTCGGCATCTTGAAGCGCCAGTTTCCCAACATCTCACTGATTGGGCTGACAGCAACAGCA
ACCAACCATGTTTTGAAGGATGCACAGAAAATCCTATGTGTGGAGAAATGTTTGACATTTACAG
CGTCTTTCAACAGACCAAATCTCTACTATGAGGTTCGGCAGAAGCCCTCGAGTGCTGAAGACTT
TATCGAAAACATTGCAAACCTTATTAATGGACGGTACAAAGGAAAGTCAGGAATCATATACTGT
TTTTCTCAGAAAGACTCTGAACAAGTCACCATTAGCTTACAGAAGCTGGGGGTCCGTGCAGGCA
CTTACCATGCCAACATGGAGCCGGAGGACAGGACCAAGGTTCACACGCAGTGGTCAGCCAATGA
GCTTCAGGTGGTAGTGGCAACAGTCGCATTTGGCATGGGAATTGATAAGCCTGACGTGAGGTTT
GTCATCCATCATTCAATGAGCAAATCCATGGAGAATTACTACCAAGAGAGTGGGCGTGCCGGTC
GAGATGACTGGAGAGCAGACTGTATTCTGTATTACGGCTTCGGAGACATATTCAGGATCAGCTC
GATGGTGGTCATGGAGAATGTGGGACAGCAGAAGCTGTATGAGATGGTGTCATACTGCCAGAAT
ATCAGCAAGTGTCGCCGTGCGTTAATAGCCCAACATTTTGATGAAGTGTGGAATGCAGACGCCT
GTAACAAAATGTGTGACAACTGCTGTAAAGACGACTCGTTTGAGAAAAAGAATATAACCGAGCA
CTGCCAAGCCCTGATCAAGATTCTGAAGCAGGCAGAAGGACTGAATGAAAAGCTCACCCCACTG
AAGCTGATTGATGCTTGGATGGGAAAGGGAGCAGCCAAGTTCAGAGTGGCTGGCGTTGCTGTCC
CAGCCCTTCCCCGAGAAGACCTGGAGAAAATCATCGTACATGCTCTCCTGCAGCAGTATCTCAA
GGAAGACTACAGCTTCACGGCTTATGCTACCATCTCGTATCTGAAGGTGGGACCCAGAGCTAGT
CTTCTTAGCAACGAAGGCCATGCTGTCACTATGCAAGTGAAGAGGTCCACACAGAGCAGCGTTA
GGGCTGCGTCACCTGAAGCTTGTGAAGTGGATTCAAAGGGGAAAGAAAAGAGCTCAGGTAACTT
CCAGAAGTCTAAAAACAGGCTTCAGCCATCTGGCTCTAAGAACACAGGCGCTAAGAAAAGAAAA
CTTCATGATGCTTGAGTGTTACTTAATCTGACACAATGTAACTGCTTATGTGTGTTTATGTGTG
GGTCACTTTTATAATCAGCTATAATTTTTGAAACAACTTTATGTTTTATACATATAAAGCTGTT
ATTTTCAGAGCTTACTTACATAATAATGAGAAGTACAACTTTCATGTAAAGTTGTCTAAACATG
ATATATCTGACATTAAGTCCACGTAGCTTTTGTAAGCCCATTTGCCTTGCTGTAACTAGCTGTT
ATCTTCTGACGTGACTCTCCTTTAAAGCAGTACTATGCTGACATGGGCTCACCTTTCCAAGTGG
GTGACATTTTAAGCTGAGCAATGTGGATGACTTCTGGTGAGAAAAGCTGCTGTTCTTGTTCAGA
TAGAAACAGTAAGTCGACAGTAATGAATGTATCAGCAAGAAGGCTCTGCACAATCTGCACTCTG
ATCTAAGTAAACCGAGACAGCAAGCCTCCTGAAACCCCAGCCTTACTATGATGTTCAGGCAAAC
AAAGGATCTGGTGCTTTGTATGAGTCAAGGTTTATTGTCAACTGTGTACTAGGAGTGTTCATCT
GCAAATCAGTCATTAAATGGATCCATCCTAAGGA

hide sequence

RefSeq Acc Id:

XM_006237620 ⟹ XP_006237682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,883 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,858 (-)	NCBI
Rnor_6.0	4	176,581,892 - 176,606,420 (-)	NCBI
Rnor_5.0	4	240,795,675 - 240,820,290 (-)	NCBI

Sequence:

show sequence

GCTGCGCCCGTTTCGGCGCGTGGGGCTGCGGCTGTCTTCGGGGGGTTTAGGAGCCGGGCGCCTC
TGCCGTCTGCCGACGGTTTCAGGAGCCCTGGCCGCCGCGGCATGTGCTTCTGCCTCCTGTGGAG
CCGGCGCGGTGGAGGGATGCGCTCAGGGTTAGCAAGGACGTTTGGATCTCCGGTTCAGTTTTAG
AATGGCTTCCATCCCAGCTCTAACGGATGAACTGGAGTCTGTGTCCAGTGAGCTCCATGCAGTT
GACATCCAGATTCAAGAACTTACAGAGAGGCAGCACGAGCTCCTTCAGAGAAAGTCAGTCCTGA
CAAAGAGAATCAAGCAGTGCTTAGAGGACTCTGCTGCCGAGGCGAGCGGCGACTGTGACACGTC
TCCAGCTGCATGGAGTAAAGAAGATTTCCCATGGTCCGGAAAGGTAAAACATGTGCTGCGAGAT
GTGTTTAAACTGCAGAAGTTCAGACCTCTGCAGCTGGAGACTGTCAATGCCACCATGGCGAGAA
AGGACATCTTTCTTGTCATGCCCACAGGAGGAGGGAAGAGCTTGTGCTACCAGCTGCCAGCGCT
GTGCTCAGACGGTTTTACACTGGTGATTTGTCCACTCATCTCTCTTATGGAAGATCAGCTGATG
GTTTTACAACAGTTGGGGATTTCAGCTACTATGTTGAATTCTTCTAGCTCTAAGGAACATGTAA
AATGTGTGCACACTGAAATGATGAATAAAAACTCCCACTTAAAGCTGATTTATGTGACTCCAGA
GAAAATTGCAAAAAGCAAGATGTTCATGTCGAGGCTAGAGAAAGCCTATGAGGCCGGGAGACTG
ACTGGAGTGGCGGTGGATGAAGTGCATTGCTGCAGTCAGTGGGGACATGACTTCAGGCCGGATT
ACAAAGCACTCGGCATCTTGAAGCGCCAGTTTCCCAACATCTCACTGATTGGGCTGACAGCAAC
AGCAACCAACCATGTTTTGAAGGATGCACAGAAAATCCTATGTGTGGAGAAATGTTTGACATTT
ACAGCGTCTTTCAACAGACCAAATCTCTACTATGAGGTTCGGCAGAAGCCCTCGAGTGCTGAAG
ACTTTATCGAAAACATTGCAAACCTTATTAATGGACGGTACAAAGGAAAGTCAGGAATCATATA
CTGTTTTTCTCAGAAAGACTCTGAACAAGTCACCATTAGCTTACAGAAGCTGGGGGTCCGTGCA
GGCACTTACCATGCCAACATGGAGCCGGAGGACAGGACCAAGGTTCACACGCAGTGGTCAGCCA
ATGAGCTTCAGGTGGTAGTGGCAACAGTCGCATTTGGCATGGGAATTGATAAGCCTGACGTGAG
GTTTGTCATCCATCATTCAATGAGCAAATCCATGGAGAATTACTACCAAGAGAGTGGGCGTGCC
GGTCGAGATGACTGGAGAGCAGACTGTATTCTGTATTACGGCTTCGGAGACATATTCAGGATCA
GCTCGATGGTGGTCATGGAGAATGTGGGACAGCAGAAGCTGTATGAGATGGTGTCATACTGCCA
GAATATCAGCAAGTGTCGCCGTGCGTTAATAGCCCAACATTTTGATGAAGTGTGGAATGCAGAC
GCCTGTAACAAAATGTGTGACAACTGCTGTAAAGACGACTCGTTTGAGAAAAAGAATATAACCG
AGCACTGCCAAGCCCTGATCAAGATTCTGAAGCAGGCAGAAGGACTGAATGAAAAGCTCACCCC
ACTGAAGCTGATTGATGCTTGGATGGGAAAGGGAGCAGCCAAGTTCAGAGTGGCTGGCGTTGCT
GTCCCAGCCCTTCCCCGAGAAGACCTGGAGAAAATCATCGTACATGCTCTCCTGCAGCAGTATC
TCAAGGAAGACTACAGCTTCACGGCTTATGCTACCATCTCGTATCTGAAGGTGGGACCCAGAGC
TAGTCTTCTTAGCAACGAAGGCCATGCTGTCACTATGCAAGTGAAGAGGTCCACACAGAGCAGC
GTTAGGGCTGCGTCACCTGAAGCTTGTGAAGTGGATTCAAAGGGGAAAGAAAAGAGCTCAGGTA
ACTTCCAGAAGTCTAAAAACAGGCTTCAGCCATCTGGCTCTAAGAACACAGGCGCTAAGAAAAG
AAAACTTCATGATGCTTGAGTGTTACTTAATCTGACACAATGTAACTGCTTATGTGTGTTTATG
TGTGGGTCACTTTTATAATCAGCTATAATTTTTGAAACAACTTTATGTTTTATACATATAAAGC
TGTTATTTTCAGAGCTTACTTACATAATAATGAGAAGTACAACTTTCATGTAAAGTTGTCTAAA
CATGATATATCTGACATTAAGTCCACGTAGCTTTTGTAAGCCCATTTGCCTTGCTGTAACTAGC
TGTTATCTTCTGACGTGACTCTCCTTTAAAGCAGTACTATGCTGACATGGGCTCACCTTTCCAA
GTGGGTGACATTTTAAGCTGAGCAATGTGGATGACTTCTGGTGAGAAAAGCTGCTGTTCTTGTT
CAGATAGAAACAGTAAGTCGACAGTAATGAATGTATCAGCAAGAAGGCTCTGCACAATCTGCAC
TCTGATCTAAGTAAACCGAGACAGCAAGCCTCCTGAAACCCCAGCCTTACTATGATGTTCAGGC
AAACAAAGGATCTGGTGCTTTGTATGAGTCAAGGTTTATTGTCAACTGTGTACTAGGAGTGTTC
ATCTGCAAATCAGTCATTAAATGGATCCATCCTAAGGA

hide sequence

RefSeq Acc Id:

XM_039107700 ⟹ XP_038963628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,877 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,867 (-)	NCBI

RefSeq Acc Id:

XM_039107701 ⟹ XP_038963629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,891 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,867 (-)	NCBI

RefSeq Acc Id:

XM_039107702 ⟹ XP_038963630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI
mRatBN7.2	4	175,308,639 - 175,332,960 (-)	NCBI

RefSeq Acc Id:

XM_039107703 ⟹ XP_038963631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,891 (-)	NCBI
mRatBN7.2	4	175,308,337 - 175,332,867 (-)	NCBI

RefSeq Acc Id:

XM_063286165 ⟹ XP_063142235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,958 (-)	NCBI

RefSeq Acc Id:

XM_063286166 ⟹ XP_063142236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI

RefSeq Acc Id:

XM_063286167 ⟹ XP_063142237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI

RefSeq Acc Id:

XM_063286169 ⟹ XP_063142239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,875 (-)	NCBI

RefSeq Acc Id:

XM_063286170 ⟹ XP_063142240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,957 (-)	NCBI

RefSeq Acc Id:

XM_063286171 ⟹ XP_063142241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,968 (-)	NCBI

RefSeq Acc Id:

XM_063286172 ⟹ XP_063142242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	177,039,351 - 177,063,873 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012098	(Get FASTA)	NCBI Sequence Viewer
	XP_006237679	(Get FASTA)	NCBI Sequence Viewer
	XP_006237680	(Get FASTA)	NCBI Sequence Viewer
	XP_006237681	(Get FASTA)	NCBI Sequence Viewer
	XP_006237682	(Get FASTA)	NCBI Sequence Viewer
	XP_038963628	(Get FASTA)	NCBI Sequence Viewer
	XP_038963629	(Get FASTA)	NCBI Sequence Viewer
	XP_038963630	(Get FASTA)	NCBI Sequence Viewer
	XP_038963631	(Get FASTA)	NCBI Sequence Viewer
	XP_063142235	(Get FASTA)	NCBI Sequence Viewer
	XP_063142236	(Get FASTA)	NCBI Sequence Viewer
	XP_063142237	(Get FASTA)	NCBI Sequence Viewer
	XP_063142239	(Get FASTA)	NCBI Sequence Viewer
	XP_063142240	(Get FASTA)	NCBI Sequence Viewer
	XP_063142241	(Get FASTA)	NCBI Sequence Viewer
	XP_063142242	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79026	(Get FASTA)	NCBI Sequence Viewer
	EDM01501	(Get FASTA)	NCBI Sequence Viewer
	EDM01502	(Get FASTA)	NCBI Sequence Viewer
	EDM01503	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060671
	ENSRNOP00000060671.1
	ENSRNOP00000073537.2
	ENSRNOP00000077921
	ENSRNOP00000077921.1
	ENSRNOP00000085782
	ENSRNOP00000085782.1
GenBank Protein	Q6AYJ1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012098 ⟸ NM_001012098

- UniProtKB:

Q6AYJ1 (UniProtKB/Swiss-Prot), A6IMT6 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASIPALTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIKQCLEDSAAEASGDCDTS
PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL
CSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPE
KIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTAT
ATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIY
CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVR
FVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQ
NISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIKILKQAEGLNEKLTP
LKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALLQQYLKEDYSFTAYATISYLKVGPRA
SLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSKGKEKSSAVLC

hide sequence

RefSeq Acc Id:	XP_006237681 ⟸ XM_006237619
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y8C0 (UniProtKB/TrEMBL), A6IMT7 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASIPALTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIKQCLEDSAAEASGDCDTS PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL CSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPE KIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTAT ATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIY CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVR FVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQ NISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIKILKQAEGLNEKLTP LKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALLQQYLKEDYSFTAYATISYLKVGPRA SLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSKGKEKSSGNFQKSKNRLQPSGSKNTGAKKR KLHDA hide sequence

RefSeq Acc Id:	XP_006237679 ⟸ XM_006237617
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y8C0 (UniProtKB/TrEMBL), A6IMT7 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASIPALTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIKQCLEDSAAEASGDCDTS PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL CSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPE KIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTAT ATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIY CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVR FVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQ NISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIKILKQAEGLNEKLTP LKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALLQQYLKEDYSFTAYATISYLKVGPRA SLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSKGKEKSSGNFQKSKNRLQPSGSKNTGAKKR KLHDA hide sequence

RefSeq Acc Id:	XP_006237680 ⟸ XM_006237618
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y8C0 (UniProtKB/TrEMBL), A6IMT7 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASIPALTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIKQCLEDSAAEASGDCDTS PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL CSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPE KIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTAT ATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIY CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVR FVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQ NISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIKILKQAEGLNEKLTP LKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALLQQYLKEDYSFTAYATISYLKVGPRA SLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSKGKEKSSGNFQKSKNRLQPSGSKNTGAKKR KLHDA hide sequence

RefSeq Acc Id:	XP_006237682 ⟸ XM_006237620
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y8C0 (UniProtKB/TrEMBL), A6IMT7 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASIPALTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIKQCLEDSAAEASGDCDTS PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL CSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPE KIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTAT ATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIY CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVR FVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQ NISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIKILKQAEGLNEKLTP LKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALLQQYLKEDYSFTAYATISYLKVGPRA SLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSKGKEKSSGNFQKSKNRLQPSGSKNTGAKKR KLHDA hide sequence

RefSeq Acc Id:

ENSRNOP00000060671 ⟸ ENSRNOT00000065576

RefSeq Acc Id:

ENSRNOP00000073537 ⟸ ENSRNOT00000086365

RefSeq Acc Id:	XP_038963628 ⟸ XM_039107700
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A2E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963631 ⟸ XM_039107703
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A2E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963629 ⟸ XM_039107701
- Peptide Label:	isoform X3
- UniProtKB:	Q6AYJ1 (UniProtKB/Swiss-Prot), A6IMT6 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963630 ⟸ XM_039107702
- Peptide Label:	isoform X3
- UniProtKB:	Q6AYJ1 (UniProtKB/Swiss-Prot), A6IMT6 (UniProtKB/TrEMBL), A0A8I6A2E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000085782 ⟸ ENSRNOT00000114762

RefSeq Acc Id:

ENSRNOP00000077921 ⟸ ENSRNOT00000110058

RefSeq Acc Id:	XP_063142236 ⟸ XM_063286166
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063142241 ⟸ XM_063286171
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063142237 ⟸ XM_063286167
- Peptide Label:	isoform X3
- UniProtKB:	Q6AYJ1 (UniProtKB/Swiss-Prot), A6IMT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142235 ⟸ XM_063286165
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063142240 ⟸ XM_063286170
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063142239 ⟸ XM_063286169
- Peptide Label:	isoform X3
- UniProtKB:	Q6AYJ1 (UniProtKB/Swiss-Prot), A6IMT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142242 ⟸ XM_063286172
- Peptide Label:	isoform X4

Protein Domains

Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYJ1-F1-model_v2	AlphaFold	Q6AYJ1	1-621	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693486

Promoter ID:

EPDNEW_R4010

Type:

initiation region

Name:

Recql_1

Description:

RecQ like helicase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	176,606,447 - 176,606,507	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311071	AgrOrtholog
BioCyc Gene	G2FUF-42495	BioCyc
Ensembl Genes	ENSRNOG00000012602	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065576	ENTREZGENE
	ENSRNOT00000065576.3	UniProtKB/Swiss-Prot
	ENSRNOT00000086365.2	UniProtKB/TrEMBL
	ENSRNOT00000110058.1	UniProtKB/TrEMBL
	ENSRNOT00000114762.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7114009	IMAGE-MGC_LOAD
InterPro	DEAD/DEAH_box_helicase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DNA_helicase_ATP-dep_RecQ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Helicase_ATP-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Helicase_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RecQ_Zn-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:312824	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93953	IMAGE-MGC_LOAD
NCBI Gene	312824	ENTREZGENE
PANTHER	ATP-DEPENDENT DNA HELICASE Q1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DNA HELICASE RECQ FAMILY MEMBER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Helicase_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RecQ_Zn_bind	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Recql	PhenoGen
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012602	RatGTEx
SMART	DEXDc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HELICc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K5S2_RAT	UniProtKB/TrEMBL
	A0A8I5Y8C0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2E6	ENTREZGENE, UniProtKB/TrEMBL
	A6IMT6	ENTREZGENE, UniProtKB/TrEMBL
	A6IMT7	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYJ1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Recql	RecQ like helicase	Recql	RecQ helicase-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-03-13	Recql	RecQ helicase-like	Recql	RecQ protein-like (DNA helicase Q1-like)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-24	Recql	RecQ protein-like (DNA helicase Q1-like)	Recql	RecQ protein-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Recql	RecQ protein-like	Recql_predicted	RecQ protein-like (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Recql_predicted	RecQ protein-like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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