Ppp4r3cl1 (protein phosphatase 4 regulatory subunit 3C like 1) - Rat Genome Database

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Gene: Ppp4r3cl1 (protein phosphatase 4 regulatory subunit 3C like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ppp4r3cl1 (Ensembl: AABR07038788.1)
Name: protein phosphatase 4 regulatory subunit 3C like 1
RGD ID: 1563554
Description: ENCODES a protein that exhibits protein phosphatase activator activity (inferred); INVOLVED IN DNA damage response (inferred); FOUND IN nucleoplasm (inferred); protein phosphatase 4 complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC317272; putative SMEK homolog 3; RGD1563554; similar to MGC79482 protein
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X60,371,701 - 60,375,055 (+)NCBIGRCr8
mRatBN7.2X56,396,491 - 56,399,835 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX56,396,804 - 56,399,326 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X60,761,507 - 60,764,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X61,355,021 - 61,358,123 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X78,953,729 - 78,956,251 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX56,887,708 - 56,890,468 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Ppp4r3cl1
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:16
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000049652
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039100489   ⟹   XP_038956417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X60,371,701 - 60,375,055 (+)NCBI
mRatBN7.2X56,396,491 - 56,399,835 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956417 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092812.1
Reference Protein Sequences
RefSeq Acc Id: XP_038956417   ⟸   XM_039100489
- UniProtKB: A0A8I6AEL7 (UniProtKB/TrEMBL)
Protein Domains
Serine/threonine-protein phosphatase 4 regulatory

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2295 BioCyc
Ensembl Genes ENSRNOG00000029559 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049652.6 UniProtKB/TrEMBL
Gene3D-CATH Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  P4R3-like_central_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene 317272 ENTREZGENE
PANTHER ATP SYNTHASE GAMMA-RELATED UniProtKB/TrEMBL
  PROTEIN PPP4R3C UniProtKB/TrEMBL
Pfam PP4R3 UniProtKB/TrEMBL
PhenoGen Ppp4r3cl1 PhenoGen
RatGTEx ENSRNOG00000029559 RatGTEx
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt A0A8I6AEL7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Ppp4r3cl1  protein phosphatase 4 regulatory subunit 3C like 1  RGD1563554  similar to MGC79482 protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1563554  similar to MGC79482 protein   RGD1563554_predicted  similar to MGC79482 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563554_predicted  similar to MGC79482 protein (predicted)  LOC317272  similar to MGC79482 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317272  similar to MGC79482 protein      Symbol and Name status set to provisional 70820 PROVISIONAL