Ascc1 (activating signal cointegrator 1 complex subunit 1) - Rat Genome Database

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Gene: Ascc1 (activating signal cointegrator 1 complex subunit 1) Rattus norvegicus
Analyze
Symbol: Ascc1
Name: activating signal cointegrator 1 complex subunit 1
RGD ID: 1359255
Description: Predicted to enable RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in neuromuscular junction. Predicted to be part of DNA repair complex and transcription regulator complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human ASCC1 (activating signal cointegrator 1 complex subunit 1); PARTICIPATES IN estrogen signaling pathway; INTERACTS WITH 3-chloropropane-1,2-diol; bisphenol A; PCB138.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Asc-1; CGI-18; MGC94577
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,484,044 - 28,574,195 (+)NCBIGRCr8
mRatBN7.22027,941,053 - 28,031,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,941,283 - 28,031,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2028,953,068 - 29,042,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,339,329 - 28,428,545 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02029,082,038 - 29,171,106 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,558,330 - 29,648,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,558,689 - 29,648,893 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,364,192 - 31,450,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,301,682 - 27,391,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12027,317,255 - 27,405,305 (+)NCBI
Celera2029,382,698 - 29,471,423 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12077347   PMID:25931508   PMID:26924529  


Genomics

Comparative Map Data
Ascc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,484,044 - 28,574,195 (+)NCBIGRCr8
mRatBN7.22027,941,053 - 28,031,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,941,283 - 28,031,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2028,953,068 - 29,042,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,339,329 - 28,428,545 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02029,082,038 - 29,171,106 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,558,330 - 29,648,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,558,689 - 29,648,893 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,364,192 - 31,450,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,301,682 - 27,391,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12027,317,255 - 27,405,305 (+)NCBI
Celera2029,382,698 - 29,471,423 (+)NCBICelera
Cytogenetic Map20q11NCBI
ASCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381072,096,032 - 72,217,134 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1072,096,032 - 72,217,134 (-)EnsemblGRCh38hg38GRCh38
GRCh371073,855,790 - 73,976,892 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,526,284 - 73,645,700 (-)NCBINCBI36Build 36hg18NCBI36
Build 341073,526,283 - 73,645,700NCBI
Celera1067,139,520 - 67,259,405 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1067,850,149 - 67,971,139 (-)NCBIHuRef
CHM1_11074,137,546 - 74,258,640 (-)NCBICHM1_1
T2T-CHM13v2.01072,966,865 - 73,088,203 (-)NCBIT2T-CHM13v2.0
Ascc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391059,838,414 - 59,935,812 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1059,838,627 - 59,935,810 (+)EnsemblGRCm39 Ensembl
GRCm381060,002,592 - 60,099,990 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,002,805 - 60,099,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv371059,465,587 - 59,562,734 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361059,398,196 - 59,495,343 (+)NCBIMGSCv36mm8
Celera1061,100,129 - 61,197,661 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.67NCBI
Ascc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543719,381,279 - 19,490,822 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543719,381,279 - 19,487,057 (+)NCBIChiLan1.0ChiLan1.0
ASCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2884,239,731 - 84,369,223 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11084,245,052 - 84,375,834 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01068,646,113 - 68,740,097 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11071,082,355 - 71,207,093 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1071,082,355 - 71,207,096 (-)Ensemblpanpan1.1panPan2
ASCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1422,779,644 - 22,876,434 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl422,779,781 - 22,874,215 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha422,907,558 - 23,013,128 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0423,052,702 - 23,156,367 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl423,060,044 - 23,156,328 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1422,952,224 - 23,057,613 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0423,152,670 - 23,258,353 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0423,506,338 - 23,611,910 (-)NCBIUU_Cfam_GSD_1.0
Ascc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721358,203,611 - 58,298,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365216,696,120 - 6,791,873 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365216,695,366 - 6,791,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,975,165 - 75,083,634 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,975,163 - 75,109,283 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,981,917 - 81,116,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,095,335 - 59,205,646 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl959,097,501 - 59,204,874 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604819,732,054 - 19,846,152 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ascc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247545,902,557 - 6,009,560 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247545,902,696 - 6,009,564 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ascc1
396 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:51
Interacting mature miRNAs:58
Transcripts:ENSRNOT00000000701
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat

Markers in Region
D20Rat6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22028,012,816 - 28,012,852 (+)MAPPERmRatBN7.2
mRatBN7.22028,012,725 - 28,012,852 (+)MAPPERmRatBN7.2
Rnor_6.02029,630,142 - 29,630,177NCBIRnor6.0
Rnor_6.02029,630,051 - 29,630,177NCBIRnor6.0
Rnor_5.02031,434,220 - 31,434,346UniSTSRnor5.0
Rnor_5.02031,434,311 - 31,434,346UniSTSRnor5.0
RGSC_v3.42027,373,195 - 27,373,321UniSTSRGSC3.4
RGSC_v3.42027,373,194 - 27,373,321RGDRGSC3.4
RGSC_v3.42027,373,286 - 27,373,321UniSTSRGSC3.4
RGSC_v3.12027,386,994 - 27,387,121RGD
Celera2029,453,620 - 29,453,742UniSTS
Celera2029,453,707 - 29,453,742UniSTS
SHRSP x BN Map2021.46RGD
SHRSP x BN Map2021.46UniSTS
FHH x ACI Map2012.4099RGD
Cytogenetic Map20q11UniSTS
Cox5b  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2029,401,613 - 29,401,809UniSTS
Celera936,689,013 - 36,690,028UniSTS
Cytogenetic Map9q21UniSTS
Cytogenetic Map20q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 57 41 19 41 5 8 74 35 41 11 5
Low 6 3 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP504504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB742862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK357599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000085229   ⟹   ENSRNOP00000075634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2027,941,283 - 28,031,262 (+)Ensembl
Rnor_6.0 Ensembl2029,558,689 - 29,648,893 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099840   ⟹   ENSRNOP00000078475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2027,941,283 - 28,002,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118854   ⟹   ENSRNOP00000079571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2027,942,208 - 28,031,272 (+)Ensembl
RefSeq Acc Id: NM_001007632   ⟹   NP_001007633
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,345 - 28,574,195 (+)NCBI
mRatBN7.22027,941,400 - 28,031,267 (+)NCBI
Rnor_6.02029,558,689 - 29,648,894 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
RGSC_v3.42027,301,682 - 27,391,499 (+)RGD
Celera2029,382,698 - 29,471,423 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256404   ⟹   XP_006256466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,064 - 28,574,195 (+)NCBI
mRatBN7.22027,941,059 - 28,031,272 (+)NCBI
Rnor_6.02029,558,330 - 29,648,899 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256405   ⟹   XP_006256467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,064 - 28,574,195 (+)NCBI
mRatBN7.22027,941,059 - 28,031,272 (+)NCBI
Rnor_6.02029,558,330 - 29,648,899 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256407   ⟹   XP_006256469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,285 - 28,574,195 (+)NCBI
mRatBN7.22027,941,340 - 28,031,272 (+)NCBI
Rnor_6.02029,558,607 - 29,648,899 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256408   ⟹   XP_006256470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,713 - 28,574,195 (+)NCBI
mRatBN7.22027,941,773 - 28,031,272 (+)NCBI
Rnor_6.02029,559,058 - 29,648,899 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256409   ⟹   XP_006256471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,464 - 28,574,195 (+)NCBI
mRatBN7.22027,941,524 - 28,031,272 (+)NCBI
Rnor_6.02029,558,859 - 29,648,899 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256410   ⟹   XP_006256472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,712 - 28,574,195 (+)NCBI
mRatBN7.22027,941,773 - 28,031,272 (+)NCBI
Rnor_6.02029,559,058 - 29,648,899 (+)NCBI
Rnor_5.02031,364,192 - 31,450,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772881   ⟹   XP_008771103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,472 - 28,574,195 (+)NCBI
mRatBN7.22027,941,527 - 28,031,272 (+)NCBI
Rnor_6.02029,558,866 - 29,648,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098614   ⟹   XP_038954542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,044 - 28,539,045 (+)NCBI
mRatBN7.22027,941,053 - 27,992,671 (+)NCBI
RefSeq Acc Id: XM_063279072   ⟹   XP_063135142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,284 - 28,539,045 (+)NCBI
RefSeq Acc Id: XM_063279073   ⟹   XP_063135143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,484,285 - 28,539,045 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001007633   ⟸   NM_001007632
- UniProtKB: G3V619 (UniProtKB/TrEMBL),   A6K3W2 (UniProtKB/TrEMBL),   A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256466   ⟸   XM_006256404
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256467   ⟸   XM_006256405
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256469   ⟸   XM_006256407
- Peptide Label: isoform X3
- UniProtKB: G3V619 (UniProtKB/TrEMBL),   A6K3W2 (UniProtKB/TrEMBL),   A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256471   ⟸   XM_006256409
- Peptide Label: isoform X3
- UniProtKB: G3V619 (UniProtKB/TrEMBL),   A6K3W2 (UniProtKB/TrEMBL),   A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256470   ⟸   XM_006256408
- Peptide Label: isoform X3
- UniProtKB: G3V619 (UniProtKB/TrEMBL),   A6K3W2 (UniProtKB/TrEMBL),   A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256472   ⟸   XM_006256410
- Peptide Label: isoform X3
- UniProtKB: G3V619 (UniProtKB/TrEMBL),   A6K3W2 (UniProtKB/TrEMBL),   A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771103   ⟸   XM_008772881
- Peptide Label: isoform X3
- UniProtKB: G3V619 (UniProtKB/TrEMBL),   A6K3W2 (UniProtKB/TrEMBL),   A0A8I5ZMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075634   ⟸   ENSRNOT00000085229
RefSeq Acc Id: XP_038954542   ⟸   XM_039098614
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000078475   ⟸   ENSRNOT00000099840
RefSeq Acc Id: ENSRNOP00000079571   ⟸   ENSRNOT00000118854
RefSeq Acc Id: XP_063135142   ⟸   XM_063279072
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063135143   ⟸   XM_063279073
- Peptide Label: isoform X5
Protein Domains
A-kinase anchor protein 7-like phosphoesterase   K Homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V619-F1-model_v2 AlphaFold G3V619 1-356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701595
Promoter ID:EPDNEW_R12118
Type:initiation region
Name:Ascc1_1
Description:activating signal cointegrator 1 complex subunit 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02029,558,678 - 29,558,738EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359255 AgrOrtholog
BioCyc Gene G2FUF-3749 BioCyc
Ensembl Genes ENSRNOG00000056647 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085229 ENTREZGENE
  ENSRNOT00000085229.2 UniProtKB/TrEMBL
  ENSRNOT00000099840.1 UniProtKB/TrEMBL
  ENSRNOT00000118854.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
  Cyclic phosphodiesterase UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7190085 IMAGE-MGC_LOAD
InterPro Cyclic_Pdiesterase UniProtKB/TrEMBL
  Euk_LigT UniProtKB/TrEMBL
  IPR004087 UniProtKB/TrEMBL
  KH-I_ASCC1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  KH_type_1 UniProtKB/TrEMBL
  Kinase-A_anchor_nucl_local_sig UniProtKB/TrEMBL
KEGG Report rno:294512 UniProtKB/TrEMBL
MGC_CLONE MGC:94577 IMAGE-MGC_LOAD
NCBI Gene 294512 ENTREZGENE
PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 UniProtKB/TrEMBL
  PTHR13360 UniProtKB/TrEMBL
Pfam AKAP7_NLS UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PhenoGen Ascc1 PhenoGen
PIRSF Euk_LigT UniProtKB/TrEMBL
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056647 RatGTEx
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP LigT-like UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0A8I5ZMZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G2X6_RAT UniProtKB/TrEMBL
  A6K3W2 ENTREZGENE, UniProtKB/TrEMBL
  A6K3W4_RAT UniProtKB/TrEMBL
  A6K3W5_RAT UniProtKB/TrEMBL
  A6K3W6_RAT UniProtKB/TrEMBL
  G3V619 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-29 Ascc1  activating signal cointegrator 1 complex subunit 1      Symbol and Name status set to provisional 70820 PROVISIONAL