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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA alkylation repair
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Accession:GO:0006307 term browser browse the term
Definition:The repair of alkylation damage in DNA, e.g. the removal of a non-physiological alkyl group from a nucleobase. This is usually mediated by DNA alkyltransferases.
Synonyms:related_synonym: DNA dealkylation involved in DNA repair


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DNA alkylation repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
IBA		 (PMID:18432238), (PMID:20714506)
(MGI:3796299|PMID:18519673)
GO_REF:0000033		 RGD
GO_Central		 PMID:18432238 PMID:18519673 PMID:20714506 GO_REF:0000033 MGI:3796299 NCBI chr12:42,494,187...42,500,929
Ensembl chr12:42,496,300...42,500,914 		JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in IEA
ISO		 GO_REF:0000002
(PMID:20714506), (PMID:22055184)		 InterPro
RGD		 PMID:20714506 PMID:22055184 GO_REF:0000002 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000 		JBrowse link
G Ascc1 activating signal cointegrator 1 complex subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:27,941,053...28,031,272
Ensembl chr20:27,941,283...28,031,272 		JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO
ISS		 (PMID:22055184)
GO_REF:0000024		 RGD
UniProt		 PMID:22055184 GO_REF:0000024 NCBI chr20:53,510,137...53,795,446
Ensembl chr20:53,510,184...53,790,165 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in IEA
ISO		 GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698)		 Ensembl
RGD		 PMID:18775698 GO_REF:0000107 MGI:3817348 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within IDA
ISO		 (PMID:1554415) RGD PMID:1554415 PMID:15025514 RGD:2316914 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756 		JBrowse link
G Otud4 OTU deubiquitinase 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25944111)		 Ensembl
RGD		 PMID:25944111 GO_REF:0000107 NCBI chr19:28,236,713...28,279,815
Ensembl chr19:28,236,713...28,279,815 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:25944111)		 Ensembl
UniProt
RGD		 PMID:25944111 GO_REF:0000024 GO_REF:0000107 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked involved_in IEA
ISO		 GO_REF:0000107
(PMID:25944111)		 Ensembl
RGD		 PMID:25944111 GO_REF:0000107 NCBI chr  X:9,588,825...9,726,993
Ensembl chr  X:9,588,825...9,696,711 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    response to stimulus 10517
      response to stress 4178
        cellular response to stress 1993
          DNA damage response 860
            DNA repair 545
              DNA alkylation repair 9
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11448
      organic substance metabolic process 10963
        organic cyclic compound metabolic process 6032
          nucleobase-containing compound metabolic process 5530
            nucleic acid metabolic process 4955
              DNA metabolic process 962
                DNA repair 545
                  DNA alkylation repair 9
paths to the root