Nfatc2 (nuclear factor of activated T-cells 2)

Gene: Nfatc2 (nuclear factor of activated T-cells 2) Rattus norvegicus

Analyze

Symbol:

Nfatc2

Name:

nuclear factor of activated T-cells 2

RGD ID:

1307690

Description:

Predicted to enable several functions, including 14-3-3 protein binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and phosphatase binding activity. Predicted to be involved in several processes, including calcineurin-NFAT signaling cascade; positive regulation of B cell proliferation; and regulation of gene expression. Predicted to act upstream of or within several processes, including cellular response to calcium ion; myotube cell development; and positive regulation of myoblast fusion. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of chromatin; ribonucleoprotein complex; and transcription factor AP-1 complex. Predicted to be active in cytoplasm and nucleus. Used to study pulmonary hypertension. Orthologous to human NFATC2 (nuclear factor of activated T cells 2); PARTICIPATES IN calcineurin signaling pathway; nuclear factor of activated T-cells signaling pathway; Wnt signaling, non-canonical pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC311658; nuclear factor of activated T-cells, cytoplasmic 2; nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	177,615,189 - 177,747,493 (-)	NCBI		GRCr8
mRatBN7.2	3	157,195,970 - 157,328,640 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	157,198,872 - 157,328,325 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	160,994,216 - 161,108,788 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	169,493,353 - 169,607,936 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	167,235,037 - 167,349,622 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	165,241,750 - 165,374,644 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	165,245,238 - 165,360,292 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	171,380,993 - 171,514,802 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	159,656,032 - 159,773,643 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	159,560,378 - 159,679,702 (-)	NCBI
Celera	3	155,769,159 - 155,882,096 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy 1A (ISO)

genetic disease (ISO)

JOINT CONTRACTURES, OSTEOCHONDROMAS, AND B-CELL LYMPHOMA (ISO)

nervous system disease (ISO)

pulmonary hypertension (IMP,ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acetic acid (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bleomycin A2 (ISO)

buta-1,3-diene (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

Calcimycin (ISO)

calcitriol (ISO)

calcium atom (ISO)

calcium(0) (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dieldrin (ISO)

dioxygen (ISO)

endosulfan (EXP)

entinostat (ISO)

erastin (ISO)

ethanol (ISO)

ferrostatin-1 (ISO)

fisetin (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

harmine (ISO)

hydralazine (ISO)

hydroquinone (ISO)

hydroxychloroquine (ISO)

ionomycin (ISO)

KN-93 (ISO)

L-methionine (ISO)

methanol (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylisothiazolinone (ISO)

Muscarine (ISO)

N,N-diethyl-m-toluamide (EXP)

nicotine (ISO)

nitrofen (EXP)

Nor-9-carboxy-delta9-THC (ISO)

p-menthan-3-ol (ISO)

paracetamol (ISO)

permethrin (EXP)

phorbol 13-acetate 12-myristate (ISO)

pirinixic acid (ISO)

quercetin (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium acetate trihydrate (ISO)

sodium arsenite (ISO)

thapsigargin (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell receptor signaling pathway (ISO)

biological_process (ND)

calcineurin-NFAT signaling cascade (IBA,ISO)

cartilage development (ISO)

cell migration (ISO)

cellular response to calcium ion (ISO)

DNA damage response (ISO)

DNA-templated transcription (ISO)

gene expression (ISO)

myotube cell development (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

negative regulation of vascular associated smooth muscle cell differentiation (ISO)

positive regulation of B cell proliferation (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of gene expression (ISO)

positive regulation of myoblast fusion (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

response to xenobiotic stimulus (ISO)

transcription by RNA polymerase II (ISO)

Cellular Component

chromatin (ISO)

cytoplasm (ISO)

cytosol (ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO)

ribonucleoprotein complex (ISO)

transcription factor AP-1 complex (ISO)

transcription regulator complex (IBA,ISO)

Molecular Function

14-3-3 protein binding (ISO)

chromatin binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

molecular adaptor activity (ISO)

phosphatase binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

B cell receptor signaling pathway (IEA)

calcineurin signaling pathway (ISO)

mitogen activated protein kinase signaling pathway (IEA)

nuclear factor of activated T-cells signaling pathway (ISO)

T cell receptor signaling pathway (IEA)

vascular endothelial growth factor signaling pathway (IEA)

Wnt signaling pathway (IEA)

Wnt signaling, non-canonical pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The nuclear factor of activated T cells in pulmonary arterial hypertension can be therapeutically targeted.	Bonnet S, etal., Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11418-23. Epub 2007 Jun 27.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Expression of the transcription factor NFATp in a neuronal cell line and in the murine nervous system.	Ho AM, etal., J Biol Chem. 1994 Nov 11;269(45):28181-6.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation
12.	Calcium-calcineurin signaling in the regulation of cardiac hypertrophy.	Wilkins BJ and Molkentin JD, Biochem Biophys Res Commun. 2004 Oct 1;322(4):1178-91.

Additional References at PubMed

PMID:7650004	PMID:8235597	PMID:8668213	PMID:8940147	PMID:8973343	PMID:10755616	PMID:11278367	PMID:12091710	PMID:12370307	PMID:12453415	PMID:12656674	PMID:12757709
PMID:15319455	PMID:15790681	PMID:15857835	PMID:17875758	PMID:18319259	PMID:18676376	PMID:19561615	PMID:19752193	PMID:21295565	PMID:21709260	PMID:21871017	PMID:23123061
PMID:23219532	PMID:23853098	PMID:24161931	PMID:24301466	PMID:25318679	PMID:26248042	PMID:27522126	PMID:28153703	PMID:28560440	PMID:33070779	PMID:33179105	PMID:34036377
PMID:37951197

Genomics

Comparative Map Data

Nfatc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	177,615,189 - 177,747,493 (-)	NCBI		GRCr8
mRatBN7.2	3	157,195,970 - 157,328,640 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	157,198,872 - 157,328,325 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	160,994,216 - 161,108,788 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	169,493,353 - 169,607,936 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	167,235,037 - 167,349,622 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	165,241,750 - 165,374,644 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	165,245,238 - 165,360,292 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	171,380,993 - 171,514,802 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	159,656,032 - 159,773,643 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	159,560,378 - 159,679,702 (-)	NCBI
Celera	3	155,769,159 - 155,882,096 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

NFATC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	51,386,963 - 51,562,839 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	51,386,957 - 51,562,831 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	50,003,500 - 50,179,378 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	49,441,172 - 49,592,665 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	49,441,311 - 49,592,665	NCBI
Celera	20	46,712,014 - 46,883,320 (-)	NCBI		Celera
Cytogenetic Map	20	q13.2	NCBI
HuRef	20	46,752,104 - 46,926,810 (-)	NCBI		HuRef
CHM1_1	20	49,909,009 - 50,084,547 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	53,157,543 - 53,333,581 (-)	NCBI		T2T-CHM13v2.0

Nfatc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	168,318,330 - 168,443,900 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	168,318,330 - 168,443,577 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	168,476,410 - 168,601,657 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	168,476,410 - 168,601,657 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	168,301,910 - 168,427,155 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	168,167,615 - 168,292,860 (-)	NCBI		MGSCv36	mm8
Celera	2	174,418,074 - 174,542,304 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	88.91	NCBI

Nfatc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	7,035,876 - 7,153,237 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	7,035,876 - 7,153,199 (+)	NCBI	ChiLan1.0	ChiLan1.0

NFATC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	57,138,601 - 57,315,559 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	57,131,719 - 57,308,528 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	47,734,054 - 47,910,435 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	48,858,238 - 49,034,007 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	48,858,238 - 49,034,007 (-)	Ensembl	panpan1.1		panPan2

NFATC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	37,606,977 - 37,734,813 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	37,609,561 - 37,771,132 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	36,848,834 - 36,994,081 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	38,316,651 - 38,461,824 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	38,320,200 - 38,479,698 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	37,552,559 - 37,697,657 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	37,686,199 - 37,831,205 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	38,231,487 - 38,376,716 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101976824
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	188,030,736 - 188,129,333 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	3,467,178 - 3,578,882 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	3,453,475 - 3,579,292 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NFATC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	52,743,568 - 52,906,821 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	52,743,570 - 52,907,373 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	59,183,329 - 59,348,705 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NFATC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	12,412,935 - 12,585,275 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	12,430,744 - 12,540,131 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	60,814,273 - 60,985,872 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nfatc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	4,366,406 - 4,484,432 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624790	4,366,440 - 4,484,279 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nfatc2
599 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	133
Count of miRNA genes:	97
Interacting mature miRNAs:	117
Transcripts:	ENSRNOT00000065615
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	149040888	168026850	Rat

Markers in Region

D3Rat141

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	157,322,804 - 157,323,038 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	165,368,814 - 165,369,047	NCBI	Rnor6.0
Rnor_5.0	3	171,508,982 - 171,509,215	UniSTS	Rnor5.0
RGSC_v3.4	3	159,783,634 - 159,783,868	RGD	RGSC3.4
RGSC_v3.4	3	159,783,635 - 159,783,868	UniSTS	RGSC3.4
RGSC_v3.1	3	159,689,670 - 159,689,904	RGD
Celera	3	155,890,790 - 155,891,023	UniSTS
SHRSP x BN Map	3	78.8999	RGD
SHRSP x BN Map	3	78.8999	UniSTS
Cytogenetic Map	3	q42	UniSTS

D3Rat142

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	157,309,278 - 157,309,487 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	165,355,460 - 165,355,668	NCBI	Rnor6.0
Rnor_5.0	3	171,495,526 - 171,495,734	UniSTS	Rnor5.0
RGSC_v3.4	3	159,768,810 - 159,769,019	RGD	RGSC3.4
RGSC_v3.4	3	159,768,811 - 159,769,019	UniSTS	RGSC3.4
RGSC_v3.1	3	159,674,847 - 159,675,055	RGD
Celera	3	155,877,270 - 155,877,494	UniSTS
RH 3.4 Map	3	1442.4	UniSTS
RH 3.4 Map	3	1442.4	RGD
SHRSP x BN Map	3	78.8999	UniSTS
SHRSP x BN Map	3	78.8999	RGD
Cytogenetic Map	3	q42	UniSTS

Nfatc2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	151,960,823 - 151,962,481 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	156,532,524 - 156,534,181	NCBI	Rnor6.0
Rnor_6.0	X	155,795,871 - 155,797,528	NCBI	Rnor6.0
Rnor_5.0	1	151,515,195 - 151,516,852	UniSTS	Rnor5.0
Rnor_5.0	1	152,273,584 - 152,275,241	UniSTS	Rnor5.0
RGSC_v3.4	3	159,751,583 - 159,751,874	UniSTS	RGSC3.4
Celera	1	135,932,603 - 135,934,260	UniSTS
Cytogenetic Map	X	q37	UniSTS
Cytogenetic Map	3	q42	UniSTS

Nfatc2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	157,292,345 - 157,292,637 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	165,338,534 - 165,338,825	NCBI	Rnor6.0
Rnor_5.0	3	171,478,298 - 171,478,589	UniSTS	Rnor5.0
RGSC_v3.4	3	159,751,583 - 159,751,874	UniSTS	RGSC3.4
Celera	3	155,860,462 - 155,860,753	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium					2
Low	3	43	34	18	17	18	8	11	63	35	33	11	8
Below cutoff			23	23		23			11		8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000065615 ⟹ ENSRNOP00000059260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	157,199,459 - 157,314,117 (-)	Ensembl
Rnor_6.0 Ensembl	3	165,245,238 - 165,360,292 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102500 ⟹ ENSRNOP00000078664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	157,198,872 - 157,314,117 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103552 ⟹ ENSRNOP00000082665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	157,237,889 - 157,328,325 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105625 ⟹ ENSRNOP00000096538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	157,237,889 - 157,314,117 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110172 ⟹ ENSRNOP00000086352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	157,223,642 - 157,314,117 (-)	Ensembl

RefSeq Acc Id:

NM_001107805 ⟹ NP_001101275

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,618,314 - 177,732,974 (-)	NCBI
mRatBN7.2	3	157,199,459 - 157,314,117 (-)	NCBI
Rnor_6.0	3	165,245,238 - 165,360,292 (-)	NCBI
Rnor_5.0	3	171,380,993 - 171,514,802 (-)	NCBI
RGSC_v3.4	3	159,656,032 - 159,773,643 (-)	RGD
Celera	3	155,769,159 - 155,882,096 (-)	RGD

Sequence:

show sequence

CACAGACACGGTGACCCCTGCTCTGCGCCAGCCTCCTCCGGGCACCGCAACCCTACACGGCCCG
CAGCCGGAACGCCCCGAGCCATGGACGCCCCGGAGCCGCAGTCCGACCCCGACGGCGGGGACGG
CCCCGGCCACGAGCCCGGGGGCAGTTCCCAAGACGAGCTGGACTTTTCCATCCTCTTCGATTAT
GACTATCTGAACCCTATCGAAGAAGAACCGATCGCACATAAGGCCATCAGCTCACCCTCCGGAC
TCGCATACCCGGATGATGTCCTGGACTATGGCCTCAAGCCATGCAACCCTCTCGCCAGTCTCTC
TGGCGAGCCCCCTGGCCGGTTCGGAGAGTCGGATAGTATAGGGTTCCAGAACTTTCTGAGCCCG
GCCAAGCCAGCAGGGGCTTCGGGCCCGAGCCCTCGGATCGAGATCACTCCATCCCACGAACTGA
TGCAGGCAGGGGGGGCCCTCCGTGGGAGAGATGCCGGCCTGTCCCCCGAGCAGCCGGCCCTGGC
TCTGGCCGGCATGGCCGCCAGCCCGAGGTTCACACTGCCCGTGCCCGGCTTCGAGGGCTACCGC
GAGCCGCTTTGCTTGAGCCCCGCTAGCAGCGGCTCCTCTGCCAGCTTCATTTCTGACACCTTCT
CCCCCTACACCTCGCCCTGCGTCTCACCCAATAACGCCGGGCCCGACGACCTGTGTCCCCAGTT
TCAAAACATCCCTGCTCATTATTCCCCCAGAACCTCTCCAATAATGTCACCTCGAACCAGCCTC
GCCGAGGACAGCTGCCTGGGCCGACACTCGCCCGTGCCCCGTCCGGCATCCCGCTCCTCCTCAC
CCGGTGCCAAGCGGAGGCATTCGTGCGCAGAGGCCTTGGTTGCCCCTCTGCCCGCAGCCTCACC
CCAGCGCTCCCGGAGCCCCTCGCCACAGCCCTCGCCTCACGTGGCACCCCAGGACGACGGCATC
CCCGCTGGGTACCCCCCCACGGCCGGCTCTGCTGTTCTCATGGATGCCCTCAACAGCCTGGCCA
CCGACTCGCCCTGCGGGATCCCCTCTAAGATATGGAAGACCAGTCCTGATCCAACTCCCGTGTC
CACTGCTCCATCCAAGGCAGGCCTGGCCCGCCACATCTACCCTGCTGTGGAGTTCCTGGGGCCG
TGTGAGCAGGAGGAGAGGAGGAATTCCGCTCCAGAGTCCATCCTGCTGGTACCACCCACCTGGC
CCAAGCAATTGGTGCCGGCCATTCCCATCTGCAGCATCCCCGTGACTGCATCCCTCCCACCACT
AGAGTGGCCACTCTCCAACCAGTCGGGCTCCTATGAGCTTCGGATTGAGGTCCAGCCCAAGCCC
CATCACCGAGCCCACTATGAGACAGAGGGCAGCCGTGGCGCTGTCAAAGCCCCAACAGGAGGAC
ACCCTGTGGTGCAGCTCCACGGCTACATGGAGAACAAGCCTCTGGGGCTTCAGATCTTCATCGG
GACGGCTGATGAACGGATCCTTAAGCCACACGCCTTCTACCAAGTACACAGGATCACTGGGAAA
ACAGTGACAACCACTAGCTATGAGAAGATTGTGGGCAACACCAAGGTCCTGGAGATCCCCCTGG
AGCCAAAGAACAACATGCGGGCCACCATCGACTGCGCAGGCATCCTGAAGCTCCGAAACGCTGA
CATCGAGCTGCGGAAGGGTGAGACAGACATAGGCAGAAAGAACACGCGTGTGCGCCTTGTGTTC
CGTGTGCACATCCCGGAGCCCAGTGGACGCATCGTCTCCCTGCAGGCTGCATCCAACCCCATCG
AGTGCTCTCAGCGCTCTGCCCACGAGCTGCCCATGGTGGAGAGACAAGACATGGACAGCTGCCT
GGTCTACGGCGGCCAGCAGATGATCCTCACGGGCCAGAACTTCACAGCTGAGTCCAAGGTTGTG
TTCATGGAGAAGACTACAGATGGGCAGCAGATTTGGGAGATGGAAGCTACAGTGGATAAAGACA
AGAGCCAGCCTAACATGCTTTTTGTTGAGATCCCCGAGTATCGGAACAAGCACATCCGGGTGCC
CGTGAAAGTGAACTTCTACGTCATCAACGGAAAGAGAAAACGAAGTCAGCCACAGCACTTTACT
TACCACCCAGTCCCCGCCATCAAGACAGAGCCCAGCGATGAGTATGAACCGTCTTTGATCTGCA
GCCCCGCCCACGGAGGCCTGGGGAGCCAGCCATATTACCCACAGCACCCAATGCTGGCCGAGTC
CCCCTCCTGTCTTGTGGCCACCATGGCCCCTTGCCAACAGTTCCGCTCAGGGCTCTCATCCCCT
GATGCTCGCTACCAGCAGCAGAGCCCCGCAGCCGCCCTCTACCAGAGGAGCAAGAGCCTGAGTC
CAGGCCTGCTGGGCTACCAGCAGCCGTCCCTCTTGGCAGCACCCTTGGGTCTGGCTGATGCCCA
CCGTTCTGTGCTGGTGCATGCTGGTTCGCAGGGGCAGGGGCAGGGGCAGGGCTCCACCTTGCCA
CACACCTCCTCGGCCAGCCAGCAGGCCTCACCCGTGATCCACTACTCACCCACCAACCAGCAGC
TTCGTGGTGGGGGTCACCAGGAGTTCCAGCATATCATGTACTGTGAGAACTTCGGCCCCAGCTC
TGTCAGGCCTGGCCTGCCTCCCGTCAACCAAGGTCAGAGGCTGAGCCCAGGGTCCTACCCCACG
GTCATCCAACAACAGACTGCCCCGAGCCAAAGAGCTGCCAAAAACGGACCCCCGGTCAGTGACC
AGAAGGAAGCCCTGCCCAGTGGAGTGACAGTCAAACAGGAGCAGAACCTGGACCAGACTTACCT
GGATGACGTTAATGAAATCATCAGGAAGGAGTTTTCGGGACCTCCCTCCCGAAATCAGACCTAG
AAGCAAACAGTATCGCACGACGCCTTCTACTTTGGACCCCTTCTGTCTCCTCCCGCCGTCTCTG
ACTGGAACACTGCACGTGCGCAGTGCAGGCAGTTGGTGTTGGAGCCTGGGAGCCTGCTGCCTCT
CGAAGAGCATCTTAGCTGATGTCCACGGTGACTGGACAAGAAAAGCAACTGCCTGCTGACCAAA
GCCTCACTCTCAACTCACCAGGATGCTGAGCCCGAGACCTGGGGGCTGCGCTGGCGGGAGAACC
GGAGGAACCATGGTACCCCACAGACATGGCTCCATCGAGAAGGGTCTTCAGACAGAGCAACCAA
AAGCGCATGGCCCAAGAGTCCCGCCCGGTCTCTGTAGGAGCTGAACTGGACAGTCATCTATGCA
CCAGCTGGGCCATACCAAAGCTTCATTTTGAATTTTCTCTTTCCAAAGTCAAACTGCCTTGACC
CTGACAGGACCACCTGTTCCACCTTCTCAGCCTTAAGTTATAACACATGTACGTGTTTGCTAGC
TTCTGGGCCTTTGTTGTGTTTTCCTCTGCTTCGAAGAGCCAACCAAAGAGGCTGCCCGGCTGCG
CCCTCCCTCGTCCAGCTACTCCCTCTCACCCAGCTACTCCCTCTTGGCCAGCTACTCCCTAACC
CTGCTGCCTGCACCAGACCTCTGGTGGGATCCAGCCTGGGCTGCCTGTTGAGCACAATGTTTCT
GAAGGTTCCCCTCTCCACCTCCTCCACCCAGAAGTCAAGAGAACCTTCTTCTGGGTTCTTGCAT
TGACTGTTAAGGAGCTAAGACCACCAAAACTAGTCAAAACCTACAGGTGTTTT

hide sequence

RefSeq Acc Id:

XM_006235653 ⟹ XP_006235715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,656,114 - 177,733,101 (-)	NCBI
mRatBN7.2	3	157,237,235 - 157,314,245 (-)	NCBI
Rnor_6.0	3	165,283,039 - 165,360,286 (-)	NCBI
Rnor_5.0	3	171,380,993 - 171,514,802 (-)	NCBI

Sequence:

show sequence

CACGGTGACCCCTGCTCTGCGCCAGCCTCCTCCGGGCACCGCAACCCTACACGGCCCGCAGCCG
GAACGCCCCGAGCCATGGACGCCCCGGAGCCGCAGTCCGACCCCGACGGCGGGGACGGCCCCGG
CCACGAGCCCGGGGGCAGTTCCCAAGACGAGCTGGACTTTTCCATCCTCTTCGATTATGACTAT
CTGAACCCTATCGAAGAAGAACCGATCGCACATAAGGCCATCAGCTCACCCTCCGGACTCGCAT
ACCCGGATGATGTCCTGGACTATGGCCTCAAGCCATGCAACCCTCTCGCCAGTCTCTCTGGCGA
GCCCCCTGGCCGGTTCGGAGAGTCGGATAGTATAGGGTTCCAGAACTTTCTGAGCCCGGCCAAG
CCAGCAGGGGCTTCGGGCCCGAGCCCTCGGATCGAGATCACTCCATCCCACGAACTGATGCAGG
CAGGGGGGGCCCTCCGTGGGAGAGATGCCGGCCTGTCCCCCGAGCAGCCGGCCCTGGCTCTGGC
CGGCATGGCCGCCAGCCCGAGGTTCACACTGCCCGTGCCCGGCTTCGAGGGCTACCGCGAGCCG
CTTTGCTTGAGCCCCGCTAGCAGCGGCTCCTCTGCCAGCTTCATTTCTGACACCTTCTCCCCCT
ACACCTCGCCCTGCGTCTCACCCAATAACGCCGGGCCCGACGACCTGTGTCCCCAGTTTCAAAA
CATCCCTGCTCATTATTCCCCCAGAACCTCTCCAATAATGTCACCTCGAACCAGCCTCGCCGAG
GACAGCTGCCTGGGCCGACACTCGCCCGTGCCCCGTCCGGCATCCCGCTCCTCCTCACCCGGTG
CCAAGCGGAGGCATTCGTGCGCAGAGGCCTTGGTTGCCCCTCTGCCCGCAGCCTCACCCCAGCG
CTCCCGGAGCCCCTCGCCACAGCCCTCGCCTCACGTGGCACCCCAGGACGACGGCATCCCCGCT
GGGTACCCCCCCACGGCCGGCTCTGCTGTTCTCATGGATGCCCTCAACAGCCTGGCCACCGACT
CGCCCTGCGGGATCCCCTCTAAGATATGGAAGACCAGTCCTGATCCAACTCCCGTGTCCACTGC
TCCATCCAAGGCAGGCCTGGCCCGCCACATCTACCCTGCTGTGGAGTTCCTGGGGCCGTGTGAG
CAGGAGGAGAGGAGGAATTCCGCTCCAGAGTCCATCCTGCTGGTACCACCCACCTGGCCCAAGC
AATTGGTGCCGGCCATTCCCATCTGCAGCATCCCCGTGACTGCATCCCTCCCACCACTAGAGTG
GCCACTCTCCAACCAGTCGGGCTCCTATGAGCTTCGGATTGAGGTCCAGCCCAAGCCCCATCAC
CGAGCCCACTATGAGACAGAGGGCAGCCGTGGCGCTGTCAAAGCCCCAACAGGAGGACACCCTG
TGGTGCAGCTCCACGGCTACATGGAGAACAAGCCTCTGGGGCTTCAGATCTTCATCGGGACGGC
TGATGAACGGATCCTTAAGCCACACGCCTTCTACCAAGTACACAGGATCACTGGGAAAACAGTG
ACAACCACTAGCTATGAGAAGATTGTGGGCAACACCAAGGTCCTGGAGATCCCCCTGGAGCCAA
AGAACAACATGCGGGCCACCATCGACTGCGCAGGCATCCTGAAGCTCCGAAACGCTGACATCGA
GCTGCGGAAGGGTGAGACAGACATAGGCAGAAAGAACACGCGTGTGCGCCTTGTGTTCCGTGTG
CACATCCCGGAGCCCAGTGGACGCATCGTCTCCCTGCAGGCTGCATCCAACCCCATCGAGTGCT
CTCAGCGCTCTGCCCACGAGCTGCCCATGGTGGAGAGACAAGACATGGACAGCTGCCTGGTCTA
CGGCGGCCAGCAGATGATCCTCACGGGCCAGAACTTCACAGCTGAGTCCAAGGTTGTGTTCATG
GAGAAGACTACAGGACCTGCAGGGACCTGTGAGACTCAGCCTTTGCCCATCTCTCTGATCTCAG
CTGACCGTCTCTCCCCCTGGCTTTCCCGGCTGCAGAGAAACCCTCCTGCTCGCTCTGTCTTCAG
ATGCTCCGTGCTCCTTCCTGCCCCAGGATCTTCGCTTGTGCTGCTGGCTCTGTAACATTCTGCC
CCTGTTCCCTCGAGTACCGTGTCTCCTCTTACACGGAAGCCATTCTCCCCCGAGAGGCGTTCGT
GTTCAAATGCTCGTGGCTCAACCGCCCCTCCCCTCAACCCAATGTCATCTCCTGTCCCTTCGAT
ACTCTTTATTCTTCAGGTGGCACTCAGAGTTCCACCTGTCTATCTCCTCTCTCTTGGGACCTCT
GGCTCCCATACTCGACTGTCGGTTCCTGGGGAGCAGGGATAATACGCTGTTTGCTGCTGCACTC
ACAATGGTAGCATTATGTCTGCTAAGTGTGCATGTGTGTTGTGCTGAAGGAAGGCAGTGTCCCC
CTTCGTTGTCCCTCCCGCCATGAGAAGCAGCTGTACTATCTCCCATTTTACAGACGAGTTGACT
GAGGTCCAACGATATCAAACCAGAGACACCCTGGGTTAGCCCCCCCCCAACCGGGGAAAGATCT
GGAACCCTACGGTGTGCCATGTTGTCACGTCCAAGAGAAGTCAAGAGGGTAGTACTGTTCCTGT
GTGCTCTGAAAAATAAACGATGCGTAGCCTGTCAGGGAAGGTCAGGCTGGGAGGCCAGGCCGTT
CCTGCCCTTGCTAGGAACCCTGGCCCCTGGCCCCTGGCCCTGAGCAGAGTCGGGGGTCCCAGCA
AAACATTGCAAAACAGGAAAAAATCTAAGGACACAAAAACACAAGCCGTGTGGTTGAGGAGACA
GGGTTGCCATGACTCCAGGCGACTCTCGAGGCTGGCGTGATCCAGTGTTTTGGAAGGTTCCTCC
ATGTGATACAGGGTTTTGGAATTCTTCAGCTGGTAAGTCCTTCTTAATTCAGGCCCCTGGCCCT
GGCCAAGCCACTCCCGGGCTCTCTGTGTCCCGCGGGGGCGTAGGCTGGACGCAAGCCCACATCA
AATTACTCAACTCTACAACTAAAAGGTTTTGAAGCGGGTTCCTCGGTTTGTTGGATGGTTTTCT
TGGCTCGGTCTGATGGCAGAGGCTCCCATCACCTGTCGGGAAGGCAAATTGATTCTTTTTTTTT
TTTTTTTTCAAGAGGAGGCGTGGGCGGTGGAATTCCCTTTTTCCCACTGAGTCACCGAGGCCAG
CCGTGACTCACTTTATTATTCCCAGGTTCCCAGAGGCTATATCATTTTGGGCTTTGTTTAATAA
ATAGAATCGTGTATGCGCTTAAAATA

hide sequence

RefSeq Acc Id:

XM_017591799 ⟹ XP_017447288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,615,189 - 177,733,101 (-)	NCBI
mRatBN7.2	3	157,195,970 - 157,314,245 (-)	NCBI
Rnor_6.0	3	165,241,750 - 165,360,286 (-)	NCBI

Sequence:

show sequence

CACGGTGACCCCTGCTCTGCGCCAGCCTCCTCCGGGCACCGCAACCCTACACGGCCCGCAGCCG
GAACGCCCCGAGCCATGGACGCCCCGGAGCCGCAGTCCGACCCCGACGGCGGGGACGGCCCCGG
CCACGAGCCCGGGGGCAGTTCCCAAGACGAGCTGGACTTTTCCATCCTCTTCGATTATGACTAT
CTGAACCCTATCGAAGAAGAACCGATCGCACATAAGGCCATCAGCTCACCCTCCGGACTCGCAT
ACCCGGATGATGTCCTGGACTATGGCCTCAAGCCATGCAACCCTCTCGCCAGTCTCTCTGGCGA
GCCCCCTGGCCGGTTCGGAGAGTCGGATAGTATAGGGTTCCAGAACTTTCTGAGCCCGGCCAAG
CCAGCAGGGGCTTCGGGCCCGAGCCCTCGGATCGAGATCACTCCATCCCACGAACTGATGCAGG
CAGGGGGGGCCCTCCGTGGGAGAGATGCCGGCCTGTCCCCCGAGCAGCCGGCCCTGGCTCTGGC
CGGCATGGCCGCCAGCCCGAGGTTCACACTGCCCGTGCCCGGCTTCGAGGGCTACCGCGAGCCG
CTTTGCTTGAGCCCCGCTAGCAGCGGCTCCTCTGCCAGCTTCATTTCTGACACCTTCTCCCCCT
ACACCTCGCCCTGCGTCTCACCCAATAACGCCGGGCCCGACGACCTGTGTCCCCAGTTTCAAAA
CATCCCTGCTCATTATTCCCCCAGAACCTCTCCAATAATGTCACCTCGAACCAGCCTCGCCGAG
GACAGCTGCCTGGGCCGACACTCGCCCGTGCCCCGTCCGGCATCCCGCTCCTCCTCACCCGGTG
CCAAGCGGAGGCATTCGTGCGCAGAGGCCTTGGTTGCCCCTCTGCCCGCAGCCTCACCCCAGCG
CTCCCGGAGCCCCTCGCCACAGCCCTCGCCTCACGTGGCACCCCAGGACGACGGCATCCCCGCT
GGGTACCCCCCCACGGCCGGCTCTGCTGTTCTCATGGATGCCCTCAACAGCCTGGCCACCGACT
CGCCCTGCGGGATCCCCTCTAAGATATGGAAGACCAGTCCTGATCCAACTCCCGTGTCCACTGC
TCCATCCAAGGCAGGCCTGGCCCGCCACATCTACCCTGCTGTGGAGTTCCTGGGGCCGTGTGAG
CAGGAGGAGAGGAGGAATTCCGCTCCAGAGTCCATCCTGCTGGTACCACCCACCTGGCCCAAGC
AATTGGTGCCGGCCATTCCCATCTGCAGCATCCCCGTGACTGCATCCCTCCCACCACTAGAGTG
GCCACTCTCCAACCAGTCGGGCTCCTATGAGCTTCGGATTGAGGTCCAGCCCAAGCCCCATCAC
CGAGCCCACTATGAGACAGAGGGCAGCCGTGGCGCTGTCAAAGCCCCAACAGGAGGACACCCTG
TGGTGCAGCTCCACGGCTACATGGAGAACAAGCCTCTGGGGCTTCAGATCTTCATCGGGACGGC
TGATGAACGGATCCTTAAGCCACACGCCTTCTACCAAGTACACAGGATCACTGGGAAAACAGTG
ACAACCACTAGCTATGAGAAGATTGTGGGCAACACCAAGGTCCTGGAGATCCCCCTGGAGCCAA
AGAACAACATGCGGGCCACCATCGACTGCGCAGGCATCCTGAAGCTCCGAAACGCTGACATCGA
GCTGCGGAAGGGTGAGACAGACATAGGCAGAAAGAACACGCGTGTGCGCCTTGTGTTCCGTGTG
CACATCCCGGAGCCCAGTGGACGCATCGTCTCCCTGCAGGCTGCATCCAACCCCATCGAGTGCT
CTCAGCGCTCTGCCCACGAGCTGCCCATGGTGGAGAGACAAGACATGGACAGCTGCCTGGTCTA
CGGCGGCCAGCAGATGATCCTCACGGGCCAGAACTTCACAGCTGAGTCCAAGGTTGTGTTCATG
GAGAAGACTACAGATGGGCAGCAGATTTGGGAGATGGAAGCTACAGTGGATAAAGACAAGAGCC
AGCCTAACATGCTTTTTGTTGAGATCCCCGAGTATCGGAACAAGCACATCCGGGTGCCCGTGAA
AGTGAACTTCTACGTCATCAACGGAAAGAGAAAACGAAGTCAGCCACAGCACTTTACTTACCAC
CCAGTCCCCGCCATCAAGACAGAGCCCAGCGATGAGTATGAACCGTCTTTGATCTGCAGCCCCG
CCCACGGAGGCCTGGGGAGCCAGCCATATTACCCACAGCACCCAATGCTGGCCGAGTCCCCCTC
CTGTCTTGTGGCCACCATGGCCCCTTGCCAACAGTTCCGCTCAGGGCTCTCATCCCCTGATGCT
CGCTACCAGCAGCAGAGCCCCGCAGCCGCCCTCTACCAGAGGAGCAAGAGCCTGAGTCCAGGCC
TGCTGGGCTACCAGCAGCCGTCCCTCTTGGCAGCACCCTTGGGTCTGGCTGATGCCCACCGTTC
TGTGCTGGTGCATGCTGGTTCGCAGGGGCAGGGGCAGGGGCAGGGCTCCACCTTGCCACACACC
TCCTCGGCCAGCCAGCAGGCCTCACCCGTGATCCACTACTCACCCACCAACCAGCAGCTTCGTG
GTGGGGGTCACCAGGAGTTCCAGCATATCATGTACTGTGAGAACTTCGGCCCCAGCTCTGTCAG
GCCTGGCCTGCCTCCCGTCAACCAAGGTCAGAGGCTGAGCCCAGGGTCCTACCCCACGGTCATC
CAACAACAGACTGCCCCGAGCCAAAGAGCTGCCAAAAACGGACCCCCGGTCAGTGACCAGAAGG
AAGCCCTGCCCAGTGGAGTGACAGTCAAACAGGAGCAGAACCTGGACCAGACTTACCTGGATGA
CGAGTTGATAGACACACACCTTAGCTGGATACAAAACATATTATGAGACCGAGTGACTGGTCTT
TGATCCGAGAAATCAAAGTGAAAGTTAATGAAATCATCAGGAAGGAGTTTTCGGGACCTCCCTC
CCGAAATCAGACCTAGAAGCAAACAGTATCGCACGACGCCTTCTACTTTGGACCCCTTCTGTCT
CCTCCCGCCGTCTCTGACTGGAACACTGCACGTGCGCAGTGCAGGCAGTTGGTGTTGGAGCCTG
GGAGCCTGCTGCCTCTCGAAGAGCATCTTAGCTGATGTCCACGGTGACTGGACAAGAAAAGCAA
CTGCCTGCTGACCAAAGCCTCACTCTCAACTCACCAGGATGCTGAGCCCGAGACCTGGGGGCTG
CGCTGGCGGGAGAACCGGAGGAACCATGGTACCCCACAGACATGGCTCCATCGAGAAGGGTCTT
CAGACAGAGCAACCAAAAGCGCATGGCCCAAGAGTCCCGCCCGGTCTCTGTAGGAGCTGAACTG
GACAGTCATCTATGCACCAGCTGGGCCATACCAAAGCTTCATTTTGAATTTTCTCTTTCCAAAG
TCAAACTGCCTTGACCCTGACAGGACCACCTGTTCCACCTTCTCAGCCTTAAGTTATAACACAT
GTACGTGTTTGCTAGCTTCTGGGCCTTTGTTGTGTTTTCCTCTGCTTCGAAGAGCCAACCAAAG
AGGCTGCCCGGCTGCGCCCTCCCTCGTCCAGCTACTCCCTCTCACCCAGCTACTCCCTCTTGGC
CAGCTACTCCCTAACCCTGCTGCCTGCACCAGACCTCTGGTGGGATCCAGCCTGGGCTGCCTGT
TGAGCACAATGTTTCTGAAGGTTCCCCTCTCCACCTCCTCCACCCAGAAGTCAAGAGAACCTTC
TTCTGGGTTCTTGCATTGACTGTTAAGGAGCTAAGACCACCAAAACTAGTCAAAACCTACAGGT
GTTTTTCATGACCACCACCAAACAGAACAAAGGGGCTGAAATCTCCCTCTGCCCTAAACTCAAA
GCAGGAAAGTGCTGGCTTCACCCCAGTTTTTTGTTTTAACCTGAATCCATTTAAAGCCTCCATA
GACTGCAAAGCGCTCGCTGCATGTGCTGTAAGTCAAGTGGATCCACGCCAGCGTATGCCTTAGT
GTGATCAAGCCCTGCTTGACCAGGTTGTGTGTCCTGTGGAATCCACACACTCTCCCTGCTTTGG
GCAGTCCTTCATGGTCTTCCTCCCCTGGTGCAGTTTTCTTCTCCCCCTGCCTTTTCCCCAGATA
TCTCTGTTGGGCATCTTTGTAAAGTGACTTTCTCGGCTTTGTCTGCTAGGCAGAGGACCCGAGA
AGCAAGCCACAGTGACTAAATAGCCATGATTGGTTTCTTTTTTTTTTTTTTTTTTTTTTCAGAG
CTGGGGACCTAACCCAGGGCCTTGCGCTTGCTAGGCGAGCGGTCTACCACTGAGCTAAATCCCC
AACCCCATGGTTGGTTTCTTATACCCCCACTCGCTCTCTTGACAAGGCCACCCGAAAATAAATC
TTGGGAGCTGGGCCAGCCATAGCGGCCTCTCCAGACAGATACCCCATGCCTAGGATTCAGCTTG
AAGTTGAAAAGTGTGTCTCTCCCATAGCAGCAGCGCTGGGCTTTCATCCACCGACCCTATGCAT
AGACCTGAGCAGAATTCTCCTTTGAACCCAGAATGTCCTCAAGAAGTTGAGCACTAAGCCTCTG
TGATTCTGAGTACTTCCTGCTAAACAAGAAACGTTCTGCTGGCCCTTTACGGACAGCAGCTTCT
GACTGGAGCAAGGCTGGCTTCTCTGGGGAAGGGTAATGAGGGTTTGGTGAGTGATTAGTTCGCA
CTTGCCCTGGCCGAGAGCCACACTTTGCACATGAGGGAATCAGGCCCTTCCTCAGATATCTCCA
AGTTTTACCCAAGTGCCTTCCTGCAATTGTAGTCGGTAACTCAGCTGCACTGTCCACAGGCTTT
GTCCTGTGACAAAGGGCTAACTCAGTTCCCATTAGTCTTCTAGACGTGTCAGCGAGGAAGACTC
CTATACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATTTACGCACATGTGT
ACAGTGCTCGTCCCCTTATACTGTCTTAGCTCGATAGCCTCAGAAGCTTACTTGCTCATAAACA
AATACCCCCATCAGCCAAGGAAGGAGAGCATTTATTACCAGACAAACAGGCCAGAGAACGTGTA
TGAGCAGCAGACAGCAATCAAGAAGGTTTGGTCAGTTACAGACTCCAGGGGAAACGTCGCAGGG
AGGGATGGGAAGATGCAGTCTGATCTAAGCGAGTGAGAGAAGATGCCGCAGCAGTGAAGACGAG
TGAACCGCACGTGGGTCAGAGGGGTGGAAGTGTGTCCTTGCCACATCCGTGGTGCCGTTAGGGT
GGCGCTCCGACAGTTCCGTGTTGCTAAAGGTGACGCTTTCTCGTCAAAGTCCACAGATCTTCCT
GGTTGTACAAAGACACCACTGCTGGGACATATATCTATCCACCCAGATGAGTATGGTATTAAAT
TCTATTTTCTTACTTGTATTTTGATGCTTTTTAATCTGCCCTTAAAATATCTCACCCCCTGTTG
GAGTTAGGACATATTTATAAATGGCCAGATGTCTTTTTCTCATCTATGTCTTCATTTTCTGTAA
GAGAAATGGTATATTCTTGATTTATTTTTTCATTCCGGAAAACAAATCCAAAGACTCACCTCGG
GTCCTGTCAAGACCTCGGGATGGGAGGGGAGGAGACTCTGTAGAAGAGAACATCTTTTCCTAGC
TTGAGAAAGGTGCCTACTCCTTCGTCCTCAAGCCAGAGCTGTCCCTGAGAAGTGTGCACAAAGG
GTTTAATTGGTGGTTGTGATTTAAAGCCACAGAACTCTGTCTTTCTATCGACAAGATCCTACAG
GCAAACCGATACAGACAGAGCCAACCACGTGGAGTCCTCACAGGTGACCGATGTGCAGCGCCCA
AAGAACGGCCACCATTTTCCCAGCACATCGGAGCCATGGACAGAGTAAGCTGGTTCCTCCCAAG
ACCTGGGATGGCTTGTTCACACGTAGCAGCCTGGTCATTCATCACCACCAGACACCACCAGCCA
CGGCCCGCTGCCGGTGACACCGTCATACCGAGAGGCCGGAAGCCAATGTGTTTTAATTATCACT
CAGAACCTAAGGGAGGCTGAACTGGTTTATTTTCGTACCACAGTGCCCAGCATTTGACAGACCA
TGGCAGGAAAGGGGGCGGGGCTATTTAACAACTGTATTCATCTGGCGCTTCAGAAAAGACACAC
AGGCGGCCAGGCTAGGGTAAGTATTCCTGAGCTCTTTGCTGGCCGGGAAGCCTGGAGGAACCTG
ACACATCCTCACCACTGGTGTCTCCCGACCCTGGGCATCAACTTCATGGACCCAAACCAGCCAG
CTGCAGAACTCGAAGTTTTCCTCCAGTCTAGCCAGCTGTTTAAATAAGGCACCATCACCTTCCC
CTACAGCCAGCTTCCCCGTGCCTTGACAGAGGGCCACCGTTCTTGTCTAATTCAGTTTGTTTAC
AGCTAACTCTGATAATGGGCTAAGAGTGGTGCTTCCCTGAGCAGGCCCCCTCTGAGATCGCAGT
GGAGTCCCGGAAACTGGAGTCATAGGGTTAATGCCGTCTCTGTGCAGCCCTGGGGCAGATGGGA
CTAAATGTCCCTGCTTTCTCAGGCTTTAGATGAACTGGATGCAGACAGTGATGTCCTGTGAGTA
AGAGCCCAGCGTTCTGGTTGGCCAGAGCATTGTGCGGGAGCATCCTAGACATCAGAGAACCCCT
GTCCCCCTGTCATTTGTCAGCCCTCACAGGAGTCTCACAATCGTCCGATTCCAGGAGGTTGCCC
CAGTGGGGTCTGAAGGCCAGGGTTTGGGAAAATCCCAACTGTCTGAGGAGTCGGAATAGATCAC
ATTCCTATGCAAAAACGATTTTAATCTCCAGTCTCATGCAGTTTATTTTTGCTATATGTAAAGT
ATTTTTATACAGCTTGTATGATGACAGCTTAGCAATAAACAGTTGAGAGCAACTTTAACTTGGG
TGTGTCTGCTTCTCTGGGGGGCGAGTTAGCGTGGCCTTAGGAGTGGGGTTCCGACAGCAAGGGA
AGTTTCAGTAGGTGTACATGGAGTATAAGCTCAGGAGGGGTCCGCTGGCCCTGTGTTGCAGGAA
CACTGGCTCAGAAAGGCTCACCCAAGTGAGAGTCTCAAGGTCAACTAAGATCTGCCCCATCCTC
CCCATTCAGTCTCTGCTATGATCTGCCCCTCTTTTTAGGGTCACAGGCAGGATCGGACTTAAGA
GTCAGTCTTGGGGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGCAACTGCAAGGCC
CTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591803 ⟹ XP_017447292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,656,114 - 177,747,493 (-)	NCBI
mRatBN7.2	3	157,237,235 - 157,328,640 (-)	NCBI
Rnor_6.0	3	165,283,039 - 165,374,644 (-)	NCBI

Sequence:

show sequence

GGCGCTGAGTAAACAGGAGGAAACAGTGAGGGAATCCCGTTATTTTACTGCATTGAAAGCCTAT
AAACACGGAGCGCGGGGAAGGAAGTCGCGTTGCCGCTGGAGTAAGCGACCGCGGAGCGCCGGGA
GCCCGGGGAGTCTGAGCCTGAGCCCGGAGCACGGCAGCGGGAGCACGGAGAGCCGGAGCAGGAG
CACAGGAGCGGGAGCACGGGGAGCCAGAGCCCCGGAGCGGAGCCTGGGCGCTGCAGCCTCTGCG
CCACTCCGCCAGATCGCAGCACACGGTCCCCAGCCCTCTGAGTCCGGCGCCTCCAGATGCAGCG
CTCCGCATTGCGCAGGCCGGGCCCCCGCCAGCCACTCCGCACCATGGGGTCTGCGGACCGAGAA
GAACCGATCGCACATAAGGCCATCAGCTCACCCTCCGGACTCGCATACCCGGATGATGTCCTGG
ACTATGGCCTCAAGCCATGCAACCCTCTCGCCAGTCTCTCTGGCGAGCCCCCTGGCCGGTTCGG
AGAGTCGGATAGTATAGGGTTCCAGAACTTTCTGAGCCCGGCCAAGCCAGCAGGGGCTTCGGGC
CCGAGCCCTCGGATCGAGATCACTCCATCCCACGAACTGATGCAGGCAGGGGGGGCCCTCCGTG
GGAGAGATGCCGGCCTGTCCCCCGAGCAGCCGGCCCTGGCTCTGGCCGGCATGGCCGCCAGCCC
GAGGTTCACACTGCCCGTGCCCGGCTTCGAGGGCTACCGCGAGCCGCTTTGCTTGAGCCCCGCT
AGCAGCGGCTCCTCTGCCAGCTTCATTTCTGACACCTTCTCCCCCTACACCTCGCCCTGCGTCT
CACCCAATAACGCCGGGCCCGACGACCTGTGTCCCCAGTTTCAAAACATCCCTGCTCATTATTC
CCCCAGAACCTCTCCAATAATGTCACCTCGAACCAGCCTCGCCGAGGACAGCTGCCTGGGCCGA
CACTCGCCCGTGCCCCGTCCGGCATCCCGCTCCTCCTCACCCGGTGCCAAGCGGAGGCATTCGT
GCGCAGAGGCCTTGGTTGCCCCTCTGCCCGCAGCCTCACCCCAGCGCTCCCGGAGCCCCTCGCC
ACAGCCCTCGCCTCACGTGGCACCCCAGGACGACGGCATCCCCGCTGGGTACCCCCCCACGGCC
GGCTCTGCTGTTCTCATGGATGCCCTCAACAGCCTGGCCACCGACTCGCCCTGCGGGATCCCCT
CTAAGATATGGAAGACCAGTCCTGATCCAACTCCCGTGTCCACTGCTCCATCCAAGGCAGGCCT
GGCCCGCCACATCTACCCTGCTGTGGAGTTCCTGGGGCCGTGTGAGCAGGAGGAGAGGAGGAAT
TCCGCTCCAGAGTCCATCCTGCTGGTACCACCCACCTGGCCCAAGCAATTGGTGCCGGCCATTC
CCATCTGCAGCATCCCCGTGACTGCATCCCTCCCACCACTAGAGTGGCCACTCTCCAACCAGTC
GGGCTCCTATGAGCTTCGGATTGAGGTCCAGCCCAAGCCCCATCACCGAGCCCACTATGAGACA
GAGGGCAGCCGTGGCGCTGTCAAAGCCCCAACAGGAGGACACCCTGTGGTGCAGCTCCACGGCT
ACATGGAGAACAAGCCTCTGGGGCTTCAGATCTTCATCGGGACGGCTGATGAACGGATCCTTAA
GCCACACGCCTTCTACCAAGTACACAGGATCACTGGGAAAACAGTGACAACCACTAGCTATGAG
AAGATTGTGGGCAACACCAAGGTCCTGGAGATCCCCCTGGAGCCAAAGAACAACATGCGGGCCA
CCATCGACTGCGCAGGCATCCTGAAGCTCCGAAACGCTGACATCGAGCTGCGGAAGGGTGAGAC
AGACATAGGCAGAAAGAACACGCGTGTGCGCCTTGTGTTCCGTGTGCACATCCCGGAGCCCAGT
GGACGCATCGTCTCCCTGCAGGCTGCATCCAACCCCATCGAGTGCTCTCAGCGCTCTGCCCACG
AGCTGCCCATGGTGGAGAGACAAGACATGGACAGCTGCCTGGTCTACGGCGGCCAGCAGATGAT
CCTCACGGGCCAGAACTTCACAGCTGAGTCCAAGGTTGTGTTCATGGAGAAGACTACAGGACCT
GCAGGGACCTGTGAGACTCAGCCTTTGCCCATCTCTCTGATCTCAGCTGACCGTCTCTCCCCCT
GGCTTTCCCGGCTGCAGAGAAACCCTCCTGCTCGCTCTGTCTTCAGATGCTCCGTGCTCCTTCC
TGCCCCAGGATCTTCGCTTGTGCTGCTGGCTCTGTAACATTCTGCCCCTGTTCCCTCGAGTACC
GTGTCTCCTCTTACACGGAAGCCATTCTCCCCCGAGAGGCGTTCGTGTTCAAATGCTCGTGGCT
CAACCGCCCCTCCCCTCAACCCAATGTCATCTCCTGTCCCTTCGATACTCTTTATTCTTCAGGT
GGCACTCAGAGTTCCACCTGTCTATCTCCTCTCTCTTGGGACCTCTGGCTCCCATACTCGACTG
TCGGTTCCTGGGGAGCAGGGATAATACGCTGTTTGCTGCTGCACTCACAATGGTAGCATTATGT
CTGCTAAGTGTGCATGTGTGTTGTGCTGAAGGAAGGCAGTGTCCCCCTTCGTTGTCCCTCCCGC
CATGAGAAGCAGCTGTACTATCTCCCATTTTACAGACGAGTTGACTGAGGTCCAACGATATCAA
ACCAGAGACACCCTGGGTTAGCCCCCCCCCAACCGGGGAAAGATCTGGAACCCTACGGTGTGCC
ATGTTGTCACGTCCAAGAGAAGTCAAGAGGGTAGTACTGTTCCTGTGTGCTCTGAAAAATAAAC
GATGCGTAGCCTGTCAGGGAAGGTCAGGCTGGGAGGCCAGGCCGTTCCTGCCCTTGCTAGGAAC
CCTGGCCCCTGGCCCCTGGCCCTGAGCAGAGTCGGGGGTCCCAGCAAAACATTGCAAAACAGGA
AAAAATCTAAGGACACAAAAACACAAGCCGTGTGGTTGAGGAGACAGGGTTGCCATGACTCCAG
GCGACTCTCGAGGCTGGCGTGATCCAGTGTTTTGGAAGGTTCCTCCATGTGATACAGGGTTTTG
GAATTCTTCAGCTGGTAAGTCCTTCTTAATTCAGGCCCCTGGCCCTGGCCAAGCCACTCCCGGG
CTCTCTGTGTCCCGCGGGGGCGTAGGCTGGACGCAAGCCCACATCAAATTACTCAACTCTACAA
CTAAAAGGTTTTGAAGCGGGTTCCTCGGTTTGTTGGATGGTTTTCTTGGCTCGGTCTGATGGCA
GAGGCTCCCATCACCTGTCGGGAAGGCAAATTGATTCTTTTTTTTTTTTTTTTTCAAGAGGAGG
CGTGGGCGGTGGAATTCCCTTTTTCCCACTGAGTCACCGAGGCCAGCCGTGACTCACTTTATTA
TTCCCAGGTTCCCAGAGGCTATATCATTTTGGGCTTTGTTTAATAAATAGAATCGTGTATGCGC
TTAAAATA

hide sequence

RefSeq Acc Id:

XM_039105142 ⟹ XP_038961070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,615,189 - 177,747,493 (-)	NCBI
mRatBN7.2	3	157,195,970 - 157,328,640 (-)	NCBI

RefSeq Acc Id:

XM_039105143 ⟹ XP_038961071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,615,189 - 177,747,493 (-)	NCBI
mRatBN7.2	3	157,195,970 - 157,328,640 (-)	NCBI

RefSeq Acc Id:

XM_039105144 ⟹ XP_038961072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,615,189 - 177,732,899 (-)	NCBI
mRatBN7.2	3	157,195,970 - 157,314,025 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101275	(Get FASTA)	NCBI Sequence Viewer
	XP_006235715	(Get FASTA)	NCBI Sequence Viewer
	XP_017447288	(Get FASTA)	NCBI Sequence Viewer
	XP_017447292	(Get FASTA)	NCBI Sequence Viewer
	XP_038961070	(Get FASTA)	NCBI Sequence Viewer
	XP_038961071	(Get FASTA)	NCBI Sequence Viewer
	XP_038961072	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96359	(Get FASTA)	NCBI Sequence Viewer
	EDL96360	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059260
	ENSRNOP00000059260.1
	ENSRNOP00000078664
	ENSRNOP00000078664.1
	ENSRNOP00000082665
	ENSRNOP00000082665.1
	ENSRNOP00000086352.1
	ENSRNOP00000096538
	ENSRNOP00000096538.1

RefSeq Acc Id:

NP_001101275 ⟸ NM_001107805

- UniProtKB:

D4A0I8 (UniProtKB/TrEMBL), A6JXQ0 (UniProtKB/TrEMBL), A0A8I6A3G2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDAPEPQSDPDGGDGPGHEPGGSSQDELDFSILFDYDYLNPIEEEPIAHKAISSPSGLAYPDDV
LDYGLKPCNPLASLSGEPPGRFGESDSIGFQNFLSPAKPAGASGPSPRIEITPSHELMQAGGAL
RGRDAGLSPEQPALALAGMAASPRFTLPVPGFEGYREPLCLSPASSGSSASFISDTFSPYTSPC
VSPNNAGPDDLCPQFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRH
SCAEALVAPLPAASPQRSRSPSPQPSPHVAPQDDGIPAGYPPTAGSAVLMDALNSLATDSPCGI
PSKIWKTSPDPTPVSTAPSKAGLARHIYPAVEFLGPCEQEERRNSAPESILLVPPTWPKQLVPA
IPICSIPVTASLPPLEWPLSNQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLH
GYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMR
ATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPEPSGRIVSLQAASNPIECSQRSA
HELPMVERQDMDSCLVYGGQQMILTGQNFTAESKVVFMEKTTDGQQIWEMEATVDKDKSQPNML
FVEIPEYRNKHIRVPVKVNFYVINGKRKRSQPQHFTYHPVPAIKTEPSDEYEPSLICSPAHGGL
GSQPYYPQHPMLAESPSCLVATMAPCQQFRSGLSSPDARYQQQSPAAALYQRSKSLSPGLLGYQ
QPSLLAAPLGLADAHRSVLVHAGSQGQGQGQGSTLPHTSSASQQASPVIHYSPTNQQLRGGGHQ
EFQHIMYCENFGPSSVRPGLPPVNQGQRLSPGSYPTVIQQQTAPSQRAAKNGPPVSDQKEALPS
GVTVKQEQNLDQTYLDDVNEIIRKEFSGPPSRNQT

hide sequence

RefSeq Acc Id:	XP_006235715 ⟸ XM_006235653
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AV80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAPEPQSDPDGGDGPGHEPGGSSQDELDFSILFDYDYLNPIEEEPIAHKAISSPSGLAYPDDV LDYGLKPCNPLASLSGEPPGRFGESDSIGFQNFLSPAKPAGASGPSPRIEITPSHELMQAGGAL RGRDAGLSPEQPALALAGMAASPRFTLPVPGFEGYREPLCLSPASSGSSASFISDTFSPYTSPC VSPNNAGPDDLCPQFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRH SCAEALVAPLPAASPQRSRSPSPQPSPHVAPQDDGIPAGYPPTAGSAVLMDALNSLATDSPCGI PSKIWKTSPDPTPVSTAPSKAGLARHIYPAVEFLGPCEQEERRNSAPESILLVPPTWPKQLVPA IPICSIPVTASLPPLEWPLSNQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLH GYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMR ATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPEPSGRIVSLQAASNPIECSQRSA HELPMVERQDMDSCLVYGGQQMILTGQNFTAESKVVFMEKTTGPAGTCETQPLPISLISADRLS PWLSRLQRNPPARSVFRCSVLLPAPGSSLVLLAL hide sequence

RefSeq Acc Id:	XP_017447288 ⟸ XM_017591799
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZLE7 (UniProtKB/TrEMBL), A0A8I6A3G2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAPEPQSDPDGGDGPGHEPGGSSQDELDFSILFDYDYLNPIEEEPIAHKAISSPSGLAYPDDV LDYGLKPCNPLASLSGEPPGRFGESDSIGFQNFLSPAKPAGASGPSPRIEITPSHELMQAGGAL RGRDAGLSPEQPALALAGMAASPRFTLPVPGFEGYREPLCLSPASSGSSASFISDTFSPYTSPC VSPNNAGPDDLCPQFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRH SCAEALVAPLPAASPQRSRSPSPQPSPHVAPQDDGIPAGYPPTAGSAVLMDALNSLATDSPCGI PSKIWKTSPDPTPVSTAPSKAGLARHIYPAVEFLGPCEQEERRNSAPESILLVPPTWPKQLVPA IPICSIPVTASLPPLEWPLSNQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLH GYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMR ATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPEPSGRIVSLQAASNPIECSQRSA HELPMVERQDMDSCLVYGGQQMILTGQNFTAESKVVFMEKTTDGQQIWEMEATVDKDKSQPNML FVEIPEYRNKHIRVPVKVNFYVINGKRKRSQPQHFTYHPVPAIKTEPSDEYEPSLICSPAHGGL GSQPYYPQHPMLAESPSCLVATMAPCQQFRSGLSSPDARYQQQSPAAALYQRSKSLSPGLLGYQ QPSLLAAPLGLADAHRSVLVHAGSQGQGQGQGSTLPHTSSASQQASPVIHYSPTNQQLRGGGHQ EFQHIMYCENFGPSSVRPGLPPVNQGQRLSPGSYPTVIQQQTAPSQRAAKNGPPVSDQKEALPS GVTVKQEQNLDQTYLDDELIDTHLSWIQNIL hide sequence

RefSeq Acc Id:	XP_017447292 ⟸ XM_017591803
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6G9R9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRSALRRPGPRQPLRTMGSADREEPIAHKAISSPSGLAYPDDVLDYGLKPCNPLASLSGEPPG RFGESDSIGFQNFLSPAKPAGASGPSPRIEITPSHELMQAGGALRGRDAGLSPEQPALALAGMA ASPRFTLPVPGFEGYREPLCLSPASSGSSASFISDTFSPYTSPCVSPNNAGPDDLCPQFQNIPA HYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAEALVAPLPAASPQRSRS PSPQPSPHVAPQDDGIPAGYPPTAGSAVLMDALNSLATDSPCGIPSKIWKTSPDPTPVSTAPSK AGLARHIYPAVEFLGPCEQEERRNSAPESILLVPPTWPKQLVPAIPICSIPVTASLPPLEWPLS NQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADER ILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRK GETDIGRKNTRVRLVFRVHIPEPSGRIVSLQAASNPIECSQRSAHELPMVERQDMDSCLVYGGQ QMILTGQNFTAESKVVFMEKTTGPAGTCETQPLPISLISADRLSPWLSRLQRNPPARSVFRCSV LLPAPGSSLVLLAL hide sequence

RefSeq Acc Id:

ENSRNOP00000059260 ⟸ ENSRNOT00000065615

RefSeq Acc Id:	XP_038961071 ⟸ XM_039105143
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961070 ⟸ XM_039105142
- Peptide Label:	isoform X2
- UniProtKB:	A6JXP9 (UniProtKB/TrEMBL), A0A8I6A3G2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961072 ⟸ XM_039105144
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000078664 ⟸ ENSRNOT00000102500

RefSeq Acc Id:

ENSRNOP00000096538 ⟸ ENSRNOT00000105625

RefSeq Acc Id:

ENSRNOP00000082665 ⟸ ENSRNOT00000103552

RefSeq Acc Id:

ENSRNOP00000086352 ⟸ ENSRNOT00000110172

Protein Domains

RHD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0I8-F1-model_v2	AlphaFold	D4A0I8	1-931	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307690	AgrOrtholog
BioCyc Gene	G2FUF-46697	BioCyc
Ensembl Genes	ENSRNOG00000012175	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065615	ENTREZGENE
	ENSRNOT00000065615.2	UniProtKB/TrEMBL
	ENSRNOT00000102500.1	UniProtKB/TrEMBL
	ENSRNOT00000103552.1	UniProtKB/TrEMBL
	ENSRNOT00000105625.1	UniProtKB/TrEMBL
	ENSRNOT00000110172.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	2.60.40.340	UniProtKB/TrEMBL
InterPro	Ig-like_fold	UniProtKB/TrEMBL
	Ig_E-set	UniProtKB/TrEMBL
	IPT_TIG_rcpt	UniProtKB/TrEMBL
	NFAT	UniProtKB/TrEMBL
	p53-like_TF_DNA-bd	UniProtKB/TrEMBL
	RHD	UniProtKB/TrEMBL
	RHD_dimer	UniProtKB/TrEMBL
	RHD_DNA_bind_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:311658	UniProtKB/TrEMBL
NCBI Gene	311658	ENTREZGENE
PANTHER	NFAT	UniProtKB/TrEMBL
	NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC 2	UniProtKB/TrEMBL
Pfam	RHD	UniProtKB/TrEMBL
	RHD_dimer	UniProtKB/TrEMBL
PhenoGen	Nfatc2	PhenoGen
PRINTS	NUCFACTORATC	UniProtKB/TrEMBL
PROSITE	REL_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012175	RatGTEx
SMART	IPT	UniProtKB/TrEMBL
Superfamily-SCOP	Ig_E-set	UniProtKB/TrEMBL
	P53_like_DNA_bnd	UniProtKB/TrEMBL
UniProt	A0A8I5ZLE7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3G2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AV80	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G9R9	ENTREZGENE, UniProtKB/TrEMBL
	A6JXP9	ENTREZGENE, UniProtKB/TrEMBL
	A6JXQ0	ENTREZGENE, UniProtKB/TrEMBL
	D4A0I8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-29	Nfatc2	nuclear factor of activated T-cells 2	Nfatc2	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Nfatc2	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	Nfatc2_predicted	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Nfatc2_predicted	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)