Gene: Cxcl12 (C-X-C motif chemokine ligand 12) Rattus norvegicus
Symbol: Cxcl12
Name: C-X-C motif chemokine ligand 12
Description: ENCODES a protein that exhibits chemokine activity (ortholog); chemokine receptor binding (ortholog); CXCR chemokine receptor binding (ortholog); INVOLVED IN adult locomotory behavior; brain development; neuron migration; PARTICIPATES IN hypoxia inducible factor pathway; syndecan signaling pathway; chemokine mediated signaling pathway; ASSOCIATED WITH Anti-Glomerular Basement Membrane Disease; Brain Ischemia; Diabetes Mellitus, Experimental; FOUND IN extracellular space; plasma membrane; external side of plasma membrane (ortholog); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C-X-C motif chemokine ligand 12; chemokine (C-X-C motif) ligand 12; chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1); SDF-1 gamma; Sdf1; Stromal cell-derived factor 1; stromal cell-derived factor-1 gamma
Allele / Splice: Cxcl12_v3   Cxcl12_v1   Cxcl12_v2  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.04149,261,044 - 149,273,891 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.04215,195,689 - 215,208,536 (+)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.44153,503,576 - 153,516,423 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14153,748,473 - 153,755,186 (+)NCBI
Celera4139,267,343 - 139,280,188 (+)NCBI
Cytogenetic Map4q42.1NCBImapview

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
More on Cxcl12
Entrez Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Map Viewer
Vista + UCSC

RGD Object Information
RGD ID: 3651
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2016-05-10
Status: ACTIVE