Gene: Cxcl12 (C-X-C motif chemokine ligand 12) Rattus norvegicus
Symbol: Cxcl12
Name: C-X-C motif chemokine ligand 12
Description: ENCODES a protein that exhibits chemokine activity (ortholog); chemokine receptor binding (ortholog); CXCR chemokine receptor binding (ortholog); INVOLVED IN adult locomotory behavior; brain development; neuron migration; PARTICIPATES IN hypoxia inducible factor pathway; syndecan signaling pathway; chemokine mediated signaling pathway; ASSOCIATED WITH Anti-Glomerular Basement Membrane Disease; Brain Ischemia; Diabetes Mellitus, Experimental; FOUND IN cytoplasm; extracellular space; plasma membrane; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C-X-C motif chemokine ligand 12; chemokine (C-X-C motif) ligand 12; chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1); SDF-1 gamma; Sdf1; Stromal cell-derived factor 1; stromal cell-derived factor-1 gamma
Orthologs:
Allele / Splice: Cxcl12_v3   Cxcl12_v1   Cxcl12_v2  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04149,261,044 - 149,273,891 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.04215,195,689 - 215,208,536 (+)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.44153,503,576 - 153,516,423 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14153,748,473 - 153,755,186 (+)NCBI
Celera4139,267,343 - 139,280,188 (+)NCBI
Cytogenetic Map4q42.1NCBImapview
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Cxcl12
Entrez Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Map Viewer
Vista
Vista + UCSC

RGD Object Information
RGD ID: 3651
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2016-08-09
Status: ACTIVE