Khdc3 (KH domain containing 3, subcortical maternal complex member) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Khdc3 (KH domain containing 3, subcortical maternal complex member) Rattus norvegicus
Analyze
Symbol: Khdc3
Name: KH domain containing 3, subcortical maternal complex member
RGD ID: 1311617
Description: Predicted to enable RNA binding activity. Predicted to be involved in several processes, including positive regulation of dendrite development; positive regulation of double-strand break repair via homologous recombination; and positive regulation of embryonic development. Predicted to act upstream of or within mitotic spindle assembly and mitotic spindle assembly checkpoint signaling. Predicted to be located in several cellular components, including apical cortex; centrosome; and ooplasm. Predicted to be part of subcortical maternal complex. Human ortholog(s) of this gene implicated in gestational trophoblastic neoplasm. Orthologous to human KHDC3L (KH domain containing 3 like, subcortical maternal complex member); INTERACTS WITH bisphenol A; diclofenac; diethylstilbestrol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ecat1; ES cell associated transcript 1; ES cell-associated transcript 1 protein; KH domain-containing protein 3; LOC300826; protein Filia; RGD1311617; similar to Calphotin CG4795-PA
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8882,722,980 - 82,724,884 (+)NCBIGRCr8
mRatBN7.2873,842,344 - 73,844,248 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl873,842,344 - 73,844,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx879,365,352 - 79,367,256 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0877,638,001 - 77,639,905 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0875,475,342 - 75,477,246 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0879,781,941 - 79,783,845 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl879,781,983 - 79,783,592 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0873,303,948 - 73,306,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4877,866,809 - 77,868,713 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1877,885,904 - 77,887,514 (+)NCBI
Celera867,911,791 - 67,913,695 (-)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell cortex  (ISO,ISS)
centrosome  (ISO,ISS)
chromosome  (IEA)
cytoplasm  (ISO,ISS)
mitochondrion  (ISO,ISS)
nucleus  (IEA,ISO,ISS)
protein-containing complex  (IBA,IEA,ISO)
subcortical maternal complex  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18057100   PMID:18804437   PMID:19376971   PMID:26537248  


Genomics

Comparative Map Data
Khdc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8882,722,980 - 82,724,884 (+)NCBIGRCr8
mRatBN7.2873,842,344 - 73,844,248 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl873,842,344 - 73,844,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx879,365,352 - 79,367,256 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0877,638,001 - 77,639,905 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0875,475,342 - 75,477,246 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0879,781,941 - 79,783,845 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl879,781,983 - 79,783,592 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0873,303,948 - 73,306,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4877,866,809 - 77,868,713 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1877,885,904 - 77,887,514 (+)NCBI
Celera867,911,791 - 67,913,695 (-)NCBICelera
Cytogenetic Map8q24NCBI
KHDC3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38673,362,658 - 73,364,171 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl673,362,658 - 73,364,171 (+)EnsemblGRCh38hg38GRCh38
GRCh37674,072,381 - 74,073,894 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36674,129,121 - 74,130,615 (+)NCBINCBI36Build 36hg18NCBI36
Celera674,466,955 - 74,468,453 (+)NCBICelera
Cytogenetic Map6q13NCBI
HuRef671,270,839 - 71,272,337 (+)NCBIHuRef
CHM1_1674,239,196 - 74,240,694 (+)NCBICHM1_1
T2T-CHM13v2.0674,539,355 - 74,540,868 (+)NCBIT2T-CHM13v2.0
Khdc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39973,008,660 - 73,013,915 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl973,009,118 - 73,011,720 (+)EnsemblGRCm39 Ensembl
GRCm38973,101,381 - 73,106,631 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl973,101,836 - 73,104,438 (+)EnsemblGRCm38mm10GRCm38
MGSCv37972,950,205 - 72,952,250 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36972,899,593 - 72,901,545 (+)NCBIMGSCv36mm8
Celera970,288,684 - 70,290,729 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map940.08NCBI
KHDC3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2593,242,733 - 93,343,618 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1691,168,480 - 91,271,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0671,089,817 - 71,190,700 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1674,478,303 - 74,479,826 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl674,478,303 - 74,479,826 (+)Ensemblpanpan1.1panPan2
KHDC3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11235,434,123 - 35,435,679 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1235,434,123 - 35,468,943 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1235,302,631 - 35,303,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01235,984,872 - 35,986,564 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11235,525,693 - 35,526,646 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01235,547,520 - 35,548,473 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01235,672,969 - 35,674,735 (+)NCBIUU_Cfam_GSD_1.0
KHDC3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1152,996,706 - 52,999,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2159,332,357 - 59,333,914 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KHDC3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1171,781,156 - 1,783,344 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl171,781,026 - 1,783,111 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660587,697,113 - 7,699,291 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Khdc3
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:36
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000034366
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3
Low 1 2 3 2 7 1
Below cutoff 2 29 13 6 14 6 1 2 16 14 17 9 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000079458   ⟹   ENSRNOP00000074731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl873,842,344 - 73,844,176 (+)Ensembl
Rnor_6.0 Ensembl879,781,983 - 79,783,592 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098905   ⟹   ENSRNOP00000093965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl873,842,344 - 73,843,995 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113238   ⟹   ENSRNOP00000088813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl873,842,344 - 73,844,248 (+)Ensembl
RefSeq Acc Id: NM_001106837   ⟹   NP_001100307
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8882,722,980 - 82,724,884 (+)NCBI
mRatBN7.2873,842,344 - 73,844,248 (+)NCBI
Rnor_6.0879,781,941 - 79,783,845 (+)NCBI
Rnor_5.0873,303,948 - 73,306,026 (-)NCBI
RGSC_v3.4877,866,809 - 77,868,713 (+)RGD
Celera867,911,791 - 67,913,695 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001100307   ⟸   NM_001106837
- UniProtKB: D3ZVV1 (UniProtKB/Swiss-Prot),   A0A8I6AXU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074731   ⟸   ENSRNOT00000079458
RefSeq Acc Id: ENSRNOP00000093965   ⟸   ENSRNOT00000098905
RefSeq Acc Id: ENSRNOP00000088813   ⟸   ENSRNOT00000113238
Protein Domains
KH   KH-like RNA-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVV1-F1-model_v2 AlphaFold D3ZVV1 1-434 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311617 AgrOrtholog
BioCyc Gene G2FUF-29851 BioCyc
Ensembl Genes ENSRNOG00000054460 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055007243 UniProtKB/Swiss-Prot
  ENSRNOG00060015883 UniProtKB/Swiss-Prot
  ENSRNOG00065016463 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000079458.2 UniProtKB/TrEMBL
  ENSRNOT00000098905.1 UniProtKB/TrEMBL
  ENSRNOT00000113238 ENTREZGENE
  ENSRNOT00000113238.1 UniProtKB/Swiss-Prot
  ENSRNOT00055012060 UniProtKB/Swiss-Prot
  ENSRNOT00060027227 UniProtKB/Swiss-Prot
  ENSRNOT00065027405 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MOEP19_KH-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:300826 UniProtKB/Swiss-Prot
NCBI Gene 300826 ENTREZGENE
PANTHER KH DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OOCYTE-EXPRESSED PROTEIN HOMOLOG-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MOEP19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Khdc3 PhenoGen
RatGTEx ENSRNOG00000054460 RatGTEx
  ENSRNOG00055007243 RatGTEx
  ENSRNOG00060015883 RatGTEx
  ENSRNOG00065016463 RatGTEx
UniProt A0A8I6AXU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2URF1_RAT UniProtKB/TrEMBL
  D3ZVV1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-16 Khdc3  KH domain containing 3, subcortical maternal complex member  Ecat1  ES cell associated transcript 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-18 Ecat1  ES cell associated transcript 1  RGD1311617_predicted  similar to Calphotin CG4795-PA (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311617_predicted  similar to Calphotin CG4795-PA (predicted)  LOC300826_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC300826_predicted  similar to Calphotin CG4795-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL