Recql4 (RecQ like helicase 4) - Rat Genome Database

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Gene: Recql4 (RecQ like helicase 4) Rattus norvegicus
Analyze
Symbol: Recql4
Name: RecQ like helicase 4
RGD ID: 1307732
Description: Predicted to enable DNA binding activity and DNA helicase activity. Predicted to be involved in DNA unwinding involved in DNA replication; double-strand break repair via homologous recombination; and telomeric D-loop disassembly. Predicted to act upstream of or within several processes, including negative regulation of sister chromatid cohesion; positive regulation of cell population proliferation; and skeletal system morphogenesis. Predicted to be located in chromosome, telomeric region and nucleoplasm. Predicted to be active in chromosome; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in Baller-Gerold syndrome; Rothmund-Thomson syndrome; and rapadilino syndrome. Orthologous to human RECQL4 (RecQ like helicase 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP-dependent DNA helicase Q4; RecQ helicase-like 4; RecQ protein-like 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,304,092 - 110,311,426 (-)NCBIGRCr8
mRatBN7.27108,423,453 - 108,430,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,423,455 - 108,430,619 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,165,377 - 110,172,538 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,388,951 - 112,396,112 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,349,701 - 112,356,865 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,765,892 - 117,773,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,763,783 - 117,773,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,753,871 - 117,761,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,752,863 - 114,760,027 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,787,094 - 114,794,223 (-)NCBI
Celera7104,773,347 - 104,780,504 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-D  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
diazinon  (ISO)
dioxygen  (ISO)
diuron  (EXP)
Enterolactone  (ISO)
FR900359  (ISO)
fructose  (ISO)
furan  (EXP)
glucose  (ISO)
glycidol  (EXP)
hydroquinone  (ISO)
lead(0)  (ISO)
lidocaine  (EXP)
methimazole  (EXP)
N-ethyl-N-nitrosourea  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
toluene 2,4-diisocyanate  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rothmund-Thomson syndrome due to RECQ4 helicase mutations: report and clinical and molecular comparisons with Bloom syndrome and Werner syndrome. Lindor NM, etal., Am J Med Genet. 2000 Jan 31;90(3):223-8.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. The DNA helicase recql4 is required for normal osteoblast expansion and osteosarcoma formation. Ng AJ, etal., PLoS Genet. 2015 Apr 10;11(4):e1005160. doi: 10.1371/journal.pgen.1005160. eCollection 2015 Apr.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15703196   PMID:16600186   PMID:19177149   PMID:19946888   PMID:22039056  


Genomics

Comparative Map Data
Recql4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,304,092 - 110,311,426 (-)NCBIGRCr8
mRatBN7.27108,423,453 - 108,430,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,423,455 - 108,430,619 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,165,377 - 110,172,538 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,388,951 - 112,396,112 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,349,701 - 112,356,865 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,765,892 - 117,773,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,763,783 - 117,773,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,753,871 - 117,761,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,752,863 - 114,760,027 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,787,094 - 114,794,223 (-)NCBI
Celera7104,773,347 - 104,780,504 (-)NCBICelera
Cytogenetic Map7q34NCBI
RECQL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,511,288 - 144,517,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,511,288 - 144,517,845 (-)EnsemblGRCh38hg38GRCh38
GRCh378145,736,671 - 145,743,217 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,707,479 - 145,714,008 (-)NCBINCBI36Build 36hg18NCBI36
Build 348145,707,621 - 145,713,976NCBI
Celera8141,912,140 - 141,918,890 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,849,825 - 140,856,695 (-)NCBIHuRef
CHM1_18145,774,859 - 145,781,399 (-)NCBICHM1_1
T2T-CHM13v2.08145,681,054 - 145,688,017 (-)NCBIT2T-CHM13v2.0
Recql4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,587,753 - 76,594,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,587,753 - 76,594,748 (-)EnsemblGRCm39 Ensembl
GRCm381576,703,553 - 76,710,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,703,553 - 76,710,548 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,534,171 - 76,540,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,530,996 - 76,537,731 (-)NCBIMGSCv36mm8
Celera1578,197,351 - 78,204,086 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Recql4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,136,216 - 3,142,422 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,136,097 - 3,142,525 (-)NCBIChiLan1.0ChiLan1.0
RECQL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,002,577 - 162,011,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,531,815 - 137,541,127 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl8144,267,101 - 144,276,985 (-)Ensemblpanpan1.1panPan2
RECQL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,930,906 - 37,936,653 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,930,621 - 37,936,753 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,891,440 - 37,897,555 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,404,421 - 38,410,540 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,404,634 - 38,410,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,096,373 - 38,102,486 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,204,789 - 38,210,471 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,681,262 - 38,687,377 (-)NCBIUU_Cfam_GSD_1.0
Recql4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303329,124 - 335,703 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364707,755,253 - 7,761,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RECQL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4287,214 - 293,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14287,206 - 293,629 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24378,111 - 384,633 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RECQL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,725,494 - 138,732,286 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,725,633 - 138,732,096 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,122,625 - 1,129,469 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Recql4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,345,844 - 12,351,637 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,345,326 - 12,351,783 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Recql4
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:97
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000045135
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat

Markers in Region
RH141373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27108,423,264 - 108,423,448 (+)MAPPERmRatBN7.2
Rnor_6.07117,765,702 - 117,765,885NCBIRnor6.0
Rnor_5.07117,753,681 - 117,753,864UniSTSRnor5.0
RGSC_v3.47114,752,673 - 114,752,856UniSTSRGSC3.4
Celera7104,773,157 - 104,773,340UniSTS
RH 3.4 Map7794.2UniSTS
Cytogenetic Map7q34UniSTS
BE109516  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27108,424,081 - 108,424,275 (+)MAPPERmRatBN7.2
Rnor_6.07117,766,519 - 117,766,712NCBIRnor6.0
Rnor_5.07117,754,498 - 117,754,691UniSTSRnor5.0
RGSC_v3.47114,753,490 - 114,753,683UniSTSRGSC3.4
Celera7104,773,974 - 104,774,167UniSTS
RH 3.4 Map7794.2UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 2 2 14 10 21
Low 3 30 45 29 19 29 2 4 59 22 20 11 2
Below cutoff 11 10 10 10 6 7 1 3 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000045135   ⟹   ENSRNOP00000047177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7108,423,455 - 108,430,619 (-)Ensembl
Rnor_6.0 Ensembl7117,763,783 - 117,773,134 (-)Ensembl
RefSeq Acc Id: NM_001130494   ⟹   NP_001123966
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,304,094 - 110,311,258 (-)NCBI
mRatBN7.27108,423,455 - 108,430,619 (-)NCBI
Rnor_6.07117,765,892 - 117,773,056 (-)NCBI
Rnor_5.07117,753,871 - 117,761,090 (-)NCBI
RGSC_v3.47114,752,863 - 114,760,027 (-)RGD
Celera7104,773,347 - 104,780,504 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241806   ⟹   XP_006241868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,304,092 - 110,311,426 (-)NCBI
mRatBN7.27108,423,453 - 108,430,790 (-)NCBI
Rnor_6.07117,765,894 - 117,773,128 (-)NCBI
Rnor_5.07117,753,871 - 117,761,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765566   ⟹   XP_008763788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,304,092 - 110,311,426 (-)NCBI
mRatBN7.27108,423,453 - 108,430,790 (-)NCBI
Rnor_6.07117,765,894 - 117,773,128 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765567   ⟹   XP_008763789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,304,092 - 110,311,426 (-)NCBI
mRatBN7.27108,423,453 - 108,430,790 (-)NCBI
Rnor_6.07117,765,894 - 117,773,128 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078832   ⟹   XP_038934760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,304,092 - 110,311,426 (-)NCBI
mRatBN7.27108,423,453 - 108,430,790 (-)NCBI
RefSeq Acc Id: XR_005486588
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,304,482 - 110,311,426 (-)NCBI
mRatBN7.27108,423,843 - 108,430,790 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001123966   ⟸   NM_001130494
- UniProtKB: A6HSC9 (UniProtKB/TrEMBL),   D4A5W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241868   ⟸   XM_006241806
- Peptide Label: isoform X3
- UniProtKB: D4A5W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763789   ⟸   XM_008765567
- Peptide Label: isoform X2
- UniProtKB: D4A5W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763788   ⟸   XM_008765566
- Peptide Label: isoform X1
- UniProtKB: D4A5W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000047177   ⟸   ENSRNOT00000045135
RefSeq Acc Id: XP_038934760   ⟸   XM_039078832
- Peptide Label: isoform X4
- UniProtKB: D4A5W5 (UniProtKB/TrEMBL)
Protein Domains
CCHC-type   Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5W5-F1-model_v2 AlphaFold D4A5W5 1-1216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695436
Promoter ID:EPDNEW_R5961
Type:single initiation site
Name:Recql4_1
Description:RecQ like helicase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,773,036 - 117,773,096EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307732 AgrOrtholog
BioCyc Gene G2FUF-32907 BioCyc
Ensembl Genes ENSRNOG00000032446 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045135 ENTREZGENE
  ENSRNOT00000045135.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1460 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_C UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  DNA_helicase_ATP-dep_RecQ UniProtKB/TrEMBL
  DNA_rep_checkpnt_protein UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
KEGG Report rno:300057 UniProtKB/TrEMBL
NCBI Gene 300057 ENTREZGENE
PANTHER ATP-DEPENDENT DNA HELICASE Q4 UniProtKB/TrEMBL
  DNA HELICASE RECQ FAMILY MEMBER UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Drc1-Sld2 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PhenoGen Recql4 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032446 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
UniProt A6HSC9 ENTREZGENE, UniProtKB/TrEMBL
  D4A5W5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Recql4  RecQ like helicase 4  Recql4  RecQ helicase-like 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-13 Recql4  RecQ helicase-like 4  Recql4  RecQ protein-like 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Recql4  RecQ protein-like 4   Recql4_predicted  RecQ protein-like 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Recql4_predicted  RecQ protein-like 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED