Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:synaptic vesicle recycling
go back to main search page
Accession:GO:0036465 term browser browse the term
Definition:The trafficking of synaptic vesicles from the pre-synaptic membrane so the vesicle can dock and prime for another round of exocytosis and neurotransmitter release. Recycling occurs after synaptic vesicle exocytosis, and is necessary to replenish presynaptic vesicle pools, sustain transmitter release and preserve the structural integrity of the presynaptic membrane. Recycling can occur following transient fusion with the presynaptic membrane (kiss and run), or via endocytosis of presynaptic membrane.
Synonyms:narrow_synonym: kiss-and-run synaptic vesicle recycling;   kiss-and-stay synaptic vesicle recycling


show annotations for term's descendants           Sort by:
synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 acts_upstream_of_or_within ISO MGI:5620801 (PMID:20203623) RGD PMID:20203623 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262 		JBrowse link
G Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 involved_in ISO (PMID:20160091) RGD PMID:20160091 NCBI chr 5:116,120,069...116,283,448
Ensembl chr 5:116,119,676...116,283,448 		JBrowse link
G Git1 GIT ArfGAP 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:62,342,082...62,356,379
Ensembl chr10:62,342,299...62,356,373 		JBrowse link
G Git2 GIT ArfGAP 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,829,717...41,872,621
Ensembl chr12:41,829,730...41,871,097 		JBrowse link
G Otof otoferlin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:25,928,018...26,024,631
Ensembl chr 6:25,928,055...26,024,631 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in IMP PMID:16141272 ParkinsonsUK-UCL PMID:16141272 RGD:8693376 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in ISO (PMID:16141272) RGD PMID:16141272 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24569478)		 UniProt
RGD		 PMID:24569478 GO_REF:0000024 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
clathrin-dependent synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itsn1 intersectin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,978,590...31,160,645
Ensembl chr11:30,978,590...31,160,645 		JBrowse link
G Itsn2 intersectin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,616,645...27,727,373
Ensembl chr 6:27,600,406...27,727,124 		JBrowse link
negative regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt11 synaptotagmin 11 involved_in IMP PMID:26589353 ParkinsonsUK-UCL PMID:26589353 RGD:11079192 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
negative regulation of synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyfip1 cytoplasmic FMR1 interacting protein 1 IMP RGD PMID:26843638 RGD:11342679 NCBI chr 1:106,710,924...106,799,393
Ensembl chr 1:106,711,016...106,799,386 		JBrowse link
G Stx1b syntaxin 1B involved_in IEA
ISO		 GO_REF:0000107
(PMID:24587181)		 Ensembl
RGD		 PMID:24587181 GO_REF:0000107 NCBI chr 1:182,415,544...182,434,385
Ensembl chr 1:182,415,546...182,441,280 		JBrowse link
positive regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca13 ATP binding cassette subfamily A member 13 involved_in ISO (PMID:33478937) RGD PMID:33478937 NCBI chr14:83,873,397...84,376,138
Ensembl chr14:83,873,940...84,375,075 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IMP RGD PMID:19762466 RGD:13461856 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140 		JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:17437541 RGD:8554440 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm1l dynamin 1-like involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:18445495 RGD:13462049 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mff mitochondrial fission factor involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:84,007,798...84,036,039
Ensembl chr 9:84,007,798...84,036,039 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IMP
ISO
IEA		 PMID:19628693
(PMID:19628693)
GO_REF:0000107		 RGD
Ensembl		 PMID:19628693 PMID:19628693 GO_REF:0000107, RGD:8554760 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:21808019 RGD:13506237 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IMP RGD PMID:26627835 RGD:11532172 NCBI chr15:45,289,917...45,362,012
Ensembl chr15:45,290,373...45,361,832 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:14532001 RGD:13464359 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:21808019 RGD:13506237 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
G Tor1a torsin family 1, member A involved_in ISS
ISO		 GO_REF:0000024
(PMID:21102408)		 UniProt
RGD		 PMID:21102408 GO_REF:0000024 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691 		JBrowse link
positive regulation of synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 IMP RGD PMID:17880892 RGD:8553820 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm3 dynamin 3 IMP RGD PMID:23687302 RGD:13462065 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) IMP RGD PMID:31074746 RGD:41408338 NCBI chr 4:19,691,439...20,050,015
Ensembl chr 4:19,695,315...20,049,885 		JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:28413018)		 UniProt
RGD		 PMID:28413018 GO_REF:0000024 NCBI chr 5:109,428,600...109,460,373
Ensembl chr 5:109,428,265...109,460,282 		JBrowse link
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gripap1 GRIP1 associated protein 1 involved_in IMP
IBA
IDA		 PMID:20098723
GO_REF:0000033		 GO_Central PMID:20098723 PMID:20098723 GO_REF:0000033, RGD:12050105, RGD:12050105 NCBI chr  X:14,678,896...14,708,747
Ensembl chr  X:14,678,898...14,708,679 		JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 involved_in IMP
IDA		 PMID:28111082 SynGO PMID:28111082 PMID:28111082 RGD:13702195, RGD:13702195 NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565 		JBrowse link
regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in IEA
ISO		 GO_REF:0000107
(PMID:27840001)		 Ensembl
RGD		 PMID:27840001 GO_REF:0000107 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Actg1 actin, gamma 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:27840001)		 Ensembl
RGD		 PMID:27840001 GO_REF:0000107 NCBI chr10:105,619,738...105,622,587
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Actg1l1 actin, gamma 1 like 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:72,977,767...72,979,691
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Arpc3 actin related protein 2/3 complex, subunit 3 involved_in ISO (PMID:34269176) RGD PMID:34269176 NCBI chr12:34,172,780...34,186,651
Ensembl chr12:34,172,780...34,186,651 		JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP
IDA
IEP		 PMID:23792689 SynGO PMID:23792689 PMID:23792689 PMID:23792689 RGD:12793033, RGD:12793033, RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within ISO MGI:4127237 (PMID:22536397) RGD PMID:22536397 NCBI chr20:8,286,337...8,645,567
Ensembl chr20:8,288,711...8,643,960 		JBrowse link
G Calm1 calmodulin 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Cxadr CXADR, Ig-like cell adhesion molecule involved_in ISO (PMID:31043663) RGD PMID:31043663 NCBI chr11:16,982,864...17,030,078
Ensembl chr11:16,982,860...17,030,046 		JBrowse link
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:26748701) RGD PMID:26748701 NCBI chr14:1,059,125...1,073,131
Ensembl chr14:1,059,170...1,073,131 		JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:16648848 RGD:13504740 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Kcnc3 potassium voltage-gated channel subfamily C member 3 involved_in ISO (PMID:33508244) RGD PMID:33508244 NCBI chr 1:95,080,960...95,095,165
Ensembl chr 1:95,080,960...95,095,160 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IBA		 (PMID:25501810)
GO_REF:0000033		 RGD
GO_Central		 PMID:25501810 GO_REF:0000033 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mylk myosin light chain kinase involved_in IDA
IMP
EXP		 PMID:27062289 SynGO PMID:27062289 PMID:27062289 PMID:27062289 RGD:405650266, RGD:405650266, RGD:405650266 NCBI chr11:65,783,008...66,030,239
Ensembl chr11:65,783,008...66,030,261 		JBrowse link
G Ophn1 oligophrenin 1 involved_in IDA
IMP		 PMID:19481455 SynGO PMID:19481455 PMID:19481455 RGD:155230799, RGD:155230799 NCBI chr  X:63,599,746...63,976,678
Ensembl chr  X:63,603,042...63,976,633 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO (PMID:29386384) RGD PMID:29386384 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma involved_in ISO (PMID:15386003) RGD PMID:15386003 NCBI chr 7:8,397,406...8,426,030
Ensembl chr 7:8,397,406...8,425,988 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in IEA
ISO		 GO_REF:0000107
(PMID:20810903)		 Ensembl
RGD		 PMID:20810903 GO_REF:0000107 NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma involved_in IMP
IDA		 PMID:26627835 SynGO PMID:26627835 PMID:26627835 RGD:11532172, RGD:11532172 NCBI chr15:45,289,917...45,362,012
Ensembl chr15:45,290,373...45,361,832 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA
ISO		 GO_REF:0000107
(PMID:29311685)		 Ensembl
RGD		 PMID:29311685 GO_REF:0000107 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO (PMID:34269176) RGD PMID:34269176 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:O60890 (PMID:27160703)		 Ensembl
RGD		 PMID:27160703 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571 		JBrowse link
G Scamp5 secretory carrier membrane protein 5 involved_in IDA
IMP		 PMID:25057210 SynGO PMID:25057210 PMID:25057210 RGD:13702419, RGD:13702419 NCBI chr 8:57,845,831...57,884,516
Ensembl chr 8:57,846,659...57,872,027 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:22750032 RGD:13463484 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 IMP RGD PMID:16815333 RGD:13504741 NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:18842885 RGD:8554167 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
G Snx9 sorting nexin 9 involved_in IDA
IMP		 PMID:17681954 SynGO PMID:17681954 PMID:17681954 RGD:155230781, RGD:155230781 NCBI chr 1:46,424,897...46,510,096
Ensembl chr 1:46,423,553...46,509,036 		JBrowse link
G Syt11 synaptotagmin 11 involved_in IEA
ISO		 GO_REF:0000107
(PMID:29311685)		 Ensembl
RGD		 PMID:29311685 GO_REF:0000107 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Syt7 synaptotagmin 7 involved_in IDA
IMP		 PMID:14532108 SynGO PMID:14532108 PMID:14532108 RGD:155230716, RGD:155230716 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
EXP
IMP		 PMID:26607000 SynGO PMID:26607000 PMID:26607000 PMID:26607000 RGD:11058152, RGD:11058152, RGD:11058152 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686 		JBrowse link
regulation of synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf14 fibroblast growth factor 14 acts_upstream_of_or_within IMP PMID:23831029 MGI PMID:23831029 RGD:10047342 NCBI chr15:101,045,033...101,679,888
Ensembl chr15:101,045,036...101,679,900 		JBrowse link
G Vamp2 vesicle-associated membrane protein 2 IMP RGD PMID:21808019 RGD:13506237 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809 		JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IDA
IMP		 PMID:22539861 SynGO PMID:22539861 PMID:22539861 RGD:12050120, RGD:12050120 NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (PMID:20203623) RGD PMID:20203623 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IDA
ISO
IBA
IMP		 PMID:22539861
(PMID:11588176)
GO_REF:0000033		 RGD
GO_Central		 PMID:11588176 PMID:22539861 PMID:22539861 GO_REF:0000033, RGD:12050120, RGD:12050120 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (PMID:29262337) RGD PMID:29262337 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393 		JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm2 dynamin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Dnm3 dynamin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Snap91 synaptosome associated protein 91 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B involved_in NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,001,512...10,019,201
Ensembl chr17:10,001,513...10,019,169 		JBrowse link
synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amph amphiphysin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2388118 (PMID:11879655)		 GO_Central
RGD		 PMID:11879655 GO_REF:0000033 NCBI chr17:45,739,385...45,982,905
Ensembl chr17:45,739,395...45,983,315 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IDA
IMP		 PMID:27534442 SynGO PMID:27534442 PMID:27534442 RGD:152025525, RGD:152025525 NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 involved_in ISO (PMID:35014951) RGD PMID:35014951 NCBI chr 1:95,384,306...95,414,170
Ensembl chr 1:95,384,309...95,414,147 		JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 involved_in ISO
IEA		 (PMID:35014951)
GO_REF:0000107		 RGD
Ensembl		 PMID:35014951 GO_REF:0000107 NCBI chr 1:196,652,315...196,725,609
Ensembl chr 1:196,652,337...196,725,603 		JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 involved_in ISO (PMID:11102472) RGD PMID:11102472 NCBI chr10:68,099,397...68,205,023
Ensembl chr10:68,099,547...68,205,013 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 involved_in IMP
ISO
IDA		 PMID:19321783
(PMID:11102472)		 RGD PMID:11102472 PMID:19321783 PMID:19321783 RGD:12050109, RGD:12050109 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140 		JBrowse link
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 involved_in ISO (PMID:11102472) RGD PMID:11102472 NCBI chr 1:77,417,496...77,428,903
Ensembl chr 1:77,417,477...77,428,905 		JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 involved_in ISO (PMID:24133283) RGD PMID:24133283 NCBI chr 1:135,412,580...135,445,191
Ensembl chr 1:135,412,580...135,445,191 		JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 involved_in ISO
IEA		 (PMID:15492041)
GO_REF:0000107		 RGD
Ensembl		 PMID:15492041 GO_REF:0000107 NCBI chr16:69,217,526...69,237,372
Ensembl chr16:69,217,633...69,235,431 		JBrowse link
G Arf6 ARF GTPase 6 involved_in IDA
IMP		 PMID:26731518 SynGO PMID:26731518 PMID:26731518 RGD:11556875, RGD:11556875 NCBI chr 6:87,853,742...87,854,890
Ensembl chr 6:87,840,142...87,874,114 		JBrowse link
G Atp8a1 ATPase phospholipid transporting 8A1 involved_in ISO (PMID:37723322) RGD PMID:37723322 NCBI chr14:40,315,013...40,557,572
Ensembl chr14:40,315,049...40,554,611 		JBrowse link
G Bin1 bridging integrator 1 involved_in IMP
ISO
IEA
IDA		 PMID:9348539
(PMID:11879655)
GO_REF:0000107		 RGD
Ensembl		 PMID:11879655 PMID:9348539 PMID:9348539 GO_REF:0000107, RGD:631926, RGD:631926 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263 		JBrowse link
G Bltp1 bridge-like lipid transfer protein family member 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,708,114...119,924,697
Ensembl chr 2:119,708,209...119,924,695 		JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (PMID:29262337) RGD PMID:29262337 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393 		JBrowse link
G Canx calnexin involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21747946)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21747946 GO_REF:0000024 GO_REF:0000107 NCBI chr10:34,623,865...34,656,866
Ensembl chr10:34,625,191...34,656,821 		JBrowse link
G Capn2 calpain 2 involved_in ISO (PMID:35318705) RGD PMID:35318705 NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969 		JBrowse link
G Cd24 CD24 molecule acts_upstream_of_or_within ISO MGI:2179996 (PMID:16606832) RGD PMID:16606832 NCBI chr20:47,074,353...47,079,662
Ensembl chr20:47,073,512...47,079,662 		JBrowse link
G Cdk5 cyclin-dependent kinase 5 IMP RGD PMID:12855954 RGD:1358501 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112 		JBrowse link
G Clta clathrin, light chain A involved_in IDA
EXP
IMP		 PMID:14985443 SynGO PMID:14985443 PMID:14985443 PMID:14985443 RGD:2301373, RGD:2301373, RGD:2301373 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472 		JBrowse link
G Cltb clathrin, light chain B involved_in EXP
IMP
IDA
NAS		 PMID:14985443 SynGO PMID:14985443 PMID:14985443 PMID:14985443 PMID:14985443 RGD:2301373, RGD:2301373, RGD:2301373, RGD:2301373 NCBI chr17:10,001,512...10,019,201
Ensembl chr17:10,001,513...10,019,169 		JBrowse link
G Cltc clathrin heavy chain involved_in IMP
IDA		 PMID:16982422 SynGO PMID:16982422 PMID:16982422 RGD:13702168, RGD:13702168 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737 		JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:32075774)		 Ensembl
RGD		 PMID:32075774 GO_REF:0000107 NCBI chr14:77,455,580...77,482,821
Ensembl chr14:77,455,696...77,482,821 		JBrowse link
G Dennd1a DENN domain containing 1A acts_upstream_of_or_within ISO (PMID:17182770) RGD PMID:17182770 NCBI chr 3:21,564,749...22,052,057
Ensembl chr 3:21,564,749...22,052,062 		JBrowse link
G Diaph1 diaphanous-related formin 1 involved_in ISO (PMID:28231467) RGD PMID:28231467 NCBI chr18:29,669,659...29,769,070
Ensembl chr18:29,669,659...29,769,172 		JBrowse link
G Dnm1 dynamin 1 involved_in ISO
IEA		 (PMID:17463283), (PMID:21689597)
GO_REF:0000107		 RGD
Ensembl		 PMID:17463283 PMID:21689597 GO_REF:0000107 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm1l dynamin 1-like involved_in IDA
IMP		 PMID:23792689 SynGO PMID:23792689 PMID:23792689 RGD:12793033, RGD:12793033 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Dnm2 dynamin 2 involved_in ISO (PMID:21689597) RGD PMID:21689597 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Dnm3 dynamin 3 involved_in ISO (PMID:21689597) RGD PMID:21689597 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Eps15l1 epidermal growth factor receptor pathway substrate 15-like 1 involved_in ISO (PMID:30692166) RGD PMID:30692166 NCBI chr16:17,426,345...17,501,677
Ensembl chr16:17,426,421...17,501,677 		JBrowse link
G Fcho2 FCH and mu domain containing endocytic adaptor 2 involved_in IBA
ISO
IMP
IDA		 GO_REF:0000033
UniProtKB:D3ZIM5|UniProtKB:D3ZYR1 (PMID:20448150)		 GO_Central
RGD		 PMID:20448150 PMID:20448150 PMID:20448150 GO_REF:0000033, RGD:12050101, RGD:12050101 NCBI chr 2:30,079,143...30,181,639
Ensembl chr 2:30,080,962...30,181,241 		JBrowse link
G Grn granulin precursor IMP RGD PMID:21813674 RGD:5509044 NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Itsn1 intersectin 1 involved_in ISO (PMID:18676989) RGD PMID:18676989 NCBI chr11:30,978,590...31,160,645
Ensembl chr11:30,978,590...31,160,645 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nlgn2 neuroligin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,544,461...54,557,854
Ensembl chr10:54,544,588...54,558,434 		JBrowse link
G Nlgn3 neuroligin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876 		JBrowse link
G Ophn1 oligophrenin 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:700009 (PMID:19481455)		 GO_Central
RGD		 PMID:19481455 GO_REF:0000033 NCBI chr  X:63,599,746...63,976,678
Ensembl chr  X:63,603,042...63,976,633 		JBrowse link
G Pacsin1 protein kinase C and casein kinase substrate in neurons 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21926968)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21926968 GO_REF:0000024 GO_REF:0000107 NCBI chr20:5,718,134...5,768,064
Ensembl chr20:5,719,857...5,765,313 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in IMP
IDA		 PMID:21808019 SynGO PMID:21808019 PMID:21808019 RGD:13506237, RGD:13506237 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA		 (PMID:35318705)
GO_REF:0000107		 RGD
Ensembl		 PMID:35318705 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Rab27b RAB27B, member RAS oncogene family involved_in IMP
IDA		 PMID:20926670 SynGO PMID:20926670 PMID:20926670 RGD:13432355, RGD:13432355 NCBI chr18:63,597,554...63,794,124
Ensembl chr18:63,600,937...63,757,180 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in IDA
IMP		 PMID:20956291 SynGO PMID:20956291 PMID:20956291 RGD:155230772, RGD:155230772 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873 		JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 involved_in IDA
IMP		 PMID:20956291 SynGO PMID:20956291 PMID:20956291 RGD:155230772, RGD:155230772 NCBI chr14:68,332,360...68,334,470
Ensembl chr14:68,332,558...68,333,205 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (PMID:19458197) RGD PMID:19458197 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 involved_in ISO
IEA		 (PMID:31053155)
GO_REF:0000107		 RGD
Ensembl		 PMID:31053155 GO_REF:0000107 NCBI chr 5:117,536,752...117,734,593
Ensembl chr 5:117,537,746...117,734,575 		JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 involved_in
acts_upstream_of_or_within		 IMP
ISO
IDA		 PMID:22099461
MGI:2151070 (PMID:19481455)		 RGD PMID:19481455 PMID:22099461 PMID:22099461 RGD:13702445, RGD:13702445 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843 		JBrowse link
G Snap91 synaptosome associated protein 91 involved_in IDA
IMP		 PMID:21808019 SynGO PMID:21808019 PMID:21808019 RGD:13506237, RGD:13506237 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
G Snca synuclein alpha involved_in IBA
ISO		 GO_REF:0000033
(PMID:18980610), (PMID:25009269)		 GO_Central
RGD		 PMID:18980610 PMID:25009269 GO_REF:0000033 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262 		JBrowse link
G Sncb synuclein, beta involved_in IBA
ISO		 GO_REF:0000033
(PMID:25009269)		 GO_Central
RGD		 PMID:25009269 GO_REF:0000033 NCBI chr17:9,846,802...9,855,013
Ensembl chr17:9,846,802...9,855,012 		JBrowse link
G Sncg synuclein, gamma involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:9,700,513...9,705,751
Ensembl chr16:9,700,514...9,705,368 		JBrowse link
G Ston1 stonin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:5,843,186...5,892,557
Ensembl chr 6:5,843,185...5,892,449 		JBrowse link
G Ston2 stonin 2 involved_in IMP
IBA
ISS
IDA
ISO		 PMID:22727701
GO_REF:0000033
GO_REF:0000024
UniProtKB:O14656 (PMID:21102408)		 GO_Central
UniProt
RGD		 PMID:21102408 PMID:22727701 PMID:22727701 GO_REF:0000024 GO_REF:0000033, RGD:12050122, RGD:12050122 NCBI chr 6:110,567,485...110,676,376
Ensembl chr 6:110,567,485...110,676,376 		JBrowse link
G Stx1a syntaxin 1A involved_in ISO
IEA		 (PMID:26635000)
GO_REF:0000107		 RGD
Ensembl		 PMID:26635000 GO_REF:0000107 NCBI chr12:21,641,971...21,670,022
Ensembl chr12:21,641,969...21,669,930 		JBrowse link
G Synj1 synaptojanin 1 involved_in
acts_upstream_of_or_within		 ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
MGI:2179801 (PMID:18093523)
GO_REF:0000107
UniProtKB:Q8CHC4 (PMID:18093523)		 ParkinsonsUK-UCL
GO_Central
RGD
Ensembl		 PMID:18093523 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:30,192,629...30,269,447
Ensembl chr11:30,192,629...30,269,220 		JBrowse link
G Synj2 synaptojanin 2 involved_in ISO
IBA
IEA		 (PMID:11498538)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:11498538 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:46,518,594...46,621,919
Ensembl chr 1:46,518,709...46,633,687 		JBrowse link
G Tbc1d24 TBC1 domain family, member 24 acts_upstream_of_or_within ISO MGI:5692831 (PMID:30335140) RGD PMID:30335140 NCBI chr10:13,205,819...13,236,013
Ensembl chr10:13,209,895...13,236,050 		JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15475946)		 UniProt
RGD		 PMID:15475946 GO_REF:0000024 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809 		JBrowse link
synaptic vesicle recycling via endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Dnm1l dynamin 1-like involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Myo5b myosin Vb involved_in IMP
IDA		 PMID:18984164 SynGO PMID:18984164 PMID:18984164 RGD:11533643, RGD:11533643 NCBI chr18:68,038,759...68,341,568
Ensembl chr18:68,038,759...68,338,745 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IDA
EXP		 PMID:29950309 SynGO PMID:29950309 PMID:29950309 RGD:405650288, RGD:405650288 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
synaptic vesicle uncoating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 involved_in IBA
ISO		 GO_REF:0000033
(PMID:20160091)		 GO_Central
RGD		 PMID:20160091 GO_REF:0000033 NCBI chr 5:116,120,069...116,283,448
Ensembl chr 5:116,119,676...116,283,448 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843 		JBrowse link
G Sh3gl3 SH3 domain containing GRB2 like 3, endophilin A3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:136,124,500...136,255,669
Ensembl chr 1:136,124,499...136,255,584 		JBrowse link
G Synj1 synaptojanin 1 acts_upstream_of_or_within
involved_in		 ISO MGI:2179801 (PMID:12481038)
(PMID:10535736)		 RGD PMID:10535736 PMID:12481038 NCBI chr11:30,192,629...30,269,447
Ensembl chr11:30,192,629...30,269,220 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20069
    cellular process 19150
      cellular localization 3680
        establishment of localization in cell 2140
          synaptic vesicle recycling 105
            negative regulation of synaptic vesicle recycling + 3
            positive regulation of synaptic vesicle recycling + 16
            regulation of synaptic vesicle recycling + 46
            synaptic vesicle endocytosis + 91
            synaptic vesicle recycling via endosome + 11
Path 2
Term Annotations click to browse term
  biological_process 20069
    localization 5698
      establishment of localization 5001
        transport 4696
          vesicle-mediated transport 1632
            vesicle-mediated transport in synapse 331
              synaptic vesicle cycle 273
                synaptic vesicle recycling 105
                  negative regulation of synaptic vesicle recycling + 3
                  positive regulation of synaptic vesicle recycling + 16
                  regulation of synaptic vesicle recycling + 46
                  synaptic vesicle endocytosis + 91
                  synaptic vesicle recycling via endosome + 11
paths to the root