Mff (mitochondrial fission factor) - Rat Genome Database

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Gene: Mff (mitochondrial fission factor) Rattus norvegicus
Analyze
Symbol: Mff
Name: mitochondrial fission factor
RGD ID: 1310230
Description: Enables GTPase binding activity. Involved in several processes, including cellular response to hydrogen peroxide; positive regulation of cardiac muscle cell apoptotic process; and positive regulation of cellular component organization. Located in synaptic vesicle. Colocalizes with mitochondrial membrane and synaptic vesicle membrane. Used to study transient cerebral ischemia. Orthologous to human MFF (mitochondrial fission factor); PARTICIPATES IN mitochondria fission pathway; INTERACTS WITH bisphenol A; chloroprene; cocaine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC102556337; LOC301563; MGC112646; mitochondrial fission factor-like; RGD1310230; similar to RIKEN cDNA 5230400G24; uncharacterized protein LOC100911613
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2984,007,798 - 84,036,039 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
Rnor_6.0988,490,280 - 88,518,517 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,493,593 - 88,517,827 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl990,880,614 - 90,908,852 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0988,237,923 - 88,266,173 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4982,045,236 - 82,071,135 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1982,226,339 - 82,254,116 (+)NCBI
Celera981,449,284 - 81,477,522 (+)NCBICelera
Cytogenetic Map9q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:12477932   PMID:15057822   PMID:18353969   PMID:20451243   PMID:21149567   PMID:21700703   PMID:23283981   PMID:23530241   PMID:23921378   PMID:30059978  


Genomics

Comparative Map Data
Mff
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2984,007,798 - 84,036,039 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
Rnor_6.0988,490,280 - 88,518,517 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,493,593 - 88,517,827 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl990,880,614 - 90,908,852 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0988,237,923 - 88,266,173 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4982,045,236 - 82,071,135 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1982,226,339 - 82,254,116 (+)NCBI
Celera981,449,284 - 81,477,522 (+)NCBICelera
Cytogenetic Map9q34NCBI
MFF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2227,325,151 - 227,357,836 (+)EnsemblGRCh38hg38GRCh38
GRCh382227,325,233 - 227,357,836 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372228,189,967 - 228,222,552 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,900,472 - 227,930,793 (+)NCBINCBI36hg18NCBI36
Build 342228,017,732 - 228,048,052NCBI
Celera2221,961,362 - 221,991,712 (+)NCBI
Cytogenetic Map2q36.3NCBI
HuRef2220,033,273 - 220,065,950 (+)NCBIHuRef
CHM1_12228,195,676 - 228,228,351 (+)NCBICHM1_1
Mff
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39182,702,599 - 82,730,111 (+)NCBIGRCm39mm39
GRCm39 Ensembl182,702,611 - 82,730,115 (+)Ensembl
GRCm38182,724,890 - 82,752,390 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl182,724,890 - 82,752,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv37182,721,493 - 82,748,965 (+)NCBIGRCm37mm9NCBIm37
MGSCv36182,603,942 - 82,631,414 (+)NCBImm8
Celera182,791,317 - 82,818,740 (+)NCBICelera
Cytogenetic Map1C5NCBI
Mff
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554537,221,244 - 7,256,029 (-)NCBIChiLan1.0ChiLan1.0
MFF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B233,381,466 - 233,413,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B233,381,466 - 233,413,778 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B114,569,893 - 114,602,158 (+)NCBIMhudiblu_PPA_v0panPan3
MFF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12540,111,860 - 40,142,246 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2540,111,894 - 40,141,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2540,729,454 - 40,759,752 (+)NCBI
ROS_Cfam_1.02540,359,046 - 40,389,383 (+)NCBI
UMICH_Zoey_3.12540,296,257 - 40,326,536 (+)NCBI
UNSW_CanFamBas_1.02540,136,663 - 40,166,970 (+)NCBI
UU_Cfam_GSD_1.02540,310,286 - 40,340,831 (+)NCBI
Mff
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303182,303,437 - 182,336,660 (+)NCBI
SpeTri2.0NW_0049365258,604,478 - 8,636,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15128,768,348 - 128,799,345 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115128,768,441 - 128,799,355 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215142,603,384 - 142,605,459 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MFF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110113,348,330 - 113,381,875 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl10113,348,446 - 113,381,162 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604086,070,374 - 86,102,885 (-)NCBIVero_WHO_p1.0
Mff
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248431,626,800 - 1,664,906 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:72
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000020705, ENSRNOT00000020712
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff 2 2 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM107137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN804971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020705   ⟹   ENSRNOP00000020705
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
Rnor_6.0 Ensembl990,880,614 - 90,908,852 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000020712   ⟹   ENSRNOP00000020712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,008,609 - 84,036,032 (+)Ensembl
Rnor_6.0 Ensembl988,493,593 - 88,517,827 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077859   ⟹   ENSRNOP00000074586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
Rnor_6.0 Ensembl990,880,614 - 90,908,852 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089142   ⟹   ENSRNOP00000072300
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
Rnor_6.0 Ensembl990,880,631 - 90,908,845 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089451   ⟹   ENSRNOP00000075445
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,011,399 - 84,036,039 (+)Ensembl
Rnor_6.0 Ensembl988,494,676 - 88,517,827 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096027   ⟹   ENSRNOP00000081902
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100485   ⟹   ENSRNOP00000089302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107482   ⟹   ENSRNOP00000091256
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117283   ⟹   ENSRNOP00000090725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117981   ⟹   ENSRNOP00000080210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl984,007,798 - 84,036,039 (+)Ensembl
RefSeq Acc Id: NM_001039015   ⟹   NP_001034104
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,798 - 84,036,039 (+)NCBI
Rnor_6.0988,490,280 - 88,518,517 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
RGSC_v3.4982,045,236 - 82,071,135 (+)RGD
Celera981,449,284 - 81,477,522 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271284   ⟹   NP_001258213
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,798 - 84,036,039 (+)NCBI
Rnor_6.0988,490,280 - 88,518,517 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Celera981,449,284 - 81,477,522 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276401   ⟹   NP_001263330
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,798 - 84,036,039 (+)NCBI
Rnor_6.0988,490,280 - 88,518,517 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Celera981,449,284 - 81,477,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245195   ⟹   XP_006245257
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
Rnor_6.0988,490,284 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245197   ⟹   XP_006245259
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
Rnor_6.0988,490,285 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245198   ⟹   XP_006245260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
Rnor_6.0988,490,285 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245200   ⟹   XP_006245262
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
Rnor_6.0988,490,286 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245201   ⟹   XP_006245263
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
Rnor_6.0988,490,285 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245204   ⟹   XP_006245266
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
Rnor_6.0988,490,285 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245205   ⟹   XP_006245267
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
Rnor_6.0988,490,286 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245206   ⟹   XP_006245268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,853 - 84,036,035 (+)NCBI
Rnor_6.0988,490,345 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245208   ⟹   XP_006245270
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
Rnor_6.0988,490,286 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245209   ⟹   XP_006245271
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,804 - 84,036,035 (+)NCBI
Rnor_6.0988,490,287 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245211   ⟹   XP_006245273
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,804 - 84,036,035 (+)NCBI
Rnor_6.0988,490,288 - 88,518,513 (+)NCBI
Rnor_5.0988,237,923 - 88,266,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767233   ⟹   XP_008765455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,798 - 84,036,035 (+)NCBI
Rnor_6.0988,490,280 - 88,518,513 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596377   ⟹   XP_017451866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,798 - 84,036,035 (+)NCBI
Rnor_6.0988,490,280 - 88,518,513 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083385   ⟹   XP_038939313
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083386   ⟹   XP_038939314
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083387   ⟹   XP_038939315
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083388   ⟹   XP_038939316
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083389   ⟹   XP_038939317
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083390   ⟹   XP_038939318
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,853 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083391   ⟹   XP_038939319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083392   ⟹   XP_038939320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,802 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083393   ⟹   XP_038939321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083395   ⟹   XP_038939323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083396   ⟹   XP_038939324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,798 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083397   ⟹   XP_038939325
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,853 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083398   ⟹   XP_038939326
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,803 - 84,036,035 (+)NCBI
RefSeq Acc Id: XM_039083399   ⟹   XP_038939327
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2984,007,853 - 84,036,035 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001034104 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258213 (Get FASTA)   NCBI Sequence Viewer  
  NP_001263330 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245257 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245259 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245260 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245262 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245263 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245266 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245267 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245268 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245270 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245271 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245273 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765455 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939313 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939314 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939315 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939316 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939318 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939319 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939320 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939323 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939324 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939325 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939326 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939327 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98682 (Get FASTA)   NCBI Sequence Viewer  
  EDL75513 (Get FASTA)   NCBI Sequence Viewer  
  EDL75515 (Get FASTA)   NCBI Sequence Viewer  
  Q4KM98 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001034104   ⟸   NM_001039015
- Peptide Label: isoform 2
- UniProtKB: Q4KM98 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001263330   ⟸   NM_001276401
- Peptide Label: isoform 3
- UniProtKB: Q4KM98 (UniProtKB/Swiss-Prot),   A0A0H2UHM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258213   ⟸   NM_001271284
- Peptide Label: isoform 1
- UniProtKB: Q4KM98 (UniProtKB/Swiss-Prot),   A0A0G2KAL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245257   ⟸   XM_006245195
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245259   ⟸   XM_006245197
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006245263   ⟸   XM_006245201
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006245267   ⟸   XM_006245205
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006245270   ⟸   XM_006245208
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006245260   ⟸   XM_006245198
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006245262   ⟸   XM_006245200
- Peptide Label: isoform X7
- UniProtKB: A0A0G2KAL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245266   ⟸   XM_006245204
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006245271   ⟸   XM_006245209
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_006245273   ⟸   XM_006245211
- Peptide Label: isoform X23
- UniProtKB: Q4KM98 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245268   ⟸   XM_006245206
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_008765455   ⟸   XM_008767233
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017451866   ⟸   XM_017596377
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000075445   ⟸   ENSRNOT00000089451
RefSeq Acc Id: ENSRNOP00000020712   ⟸   ENSRNOT00000020712
RefSeq Acc Id: XP_038939324   ⟸   XM_039083396
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939313   ⟸   XM_039083385
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939314   ⟸   XM_039083386
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939315   ⟸   XM_039083387
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939316   ⟸   XM_039083388
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038939317   ⟸   XM_039083389
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038939320   ⟸   XM_039083392
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038939319   ⟸   XM_039083391
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038939321   ⟸   XM_039083393
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038939326   ⟸   XM_039083398
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038939323   ⟸   XM_039083395
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038939318   ⟸   XM_039083390
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038939325   ⟸   XM_039083397
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038939327   ⟸   XM_039083399
- Peptide Label: isoform X24
RefSeq Acc Id: ENSRNOP00000072300   ⟸   ENSRNOT00000089142
RefSeq Acc Id: ENSRNOP00000074586   ⟸   ENSRNOT00000077859
RefSeq Acc Id: ENSRNOP00000020705   ⟸   ENSRNOT00000020705
RefSeq Acc Id: ENSRNOP00000091256   ⟸   ENSRNOT00000107482
RefSeq Acc Id: ENSRNOP00000080210   ⟸   ENSRNOT00000117981
RefSeq Acc Id: ENSRNOP00000089302   ⟸   ENSRNOT00000100485
RefSeq Acc Id: ENSRNOP00000090725   ⟸   ENSRNOT00000117283
RefSeq Acc Id: ENSRNOP00000081902   ⟸   ENSRNOT00000096027
Protein Domains
Miff

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310230 AgrOrtholog
  RGD:7706142 AgrOrtholog
Ensembl Genes ENSRNOG00000015428 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000048016 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020705 UniProtKB/TrEMBL
  ENSRNOP00000020712 UniProtKB/TrEMBL
  ENSRNOP00000072300 UniProtKB/TrEMBL
  ENSRNOP00000074586 UniProtKB/TrEMBL
  ENSRNOP00000075445 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020705 UniProtKB/TrEMBL
  ENSRNOT00000020712 UniProtKB/TrEMBL
  ENSRNOT00000077859 UniProtKB/TrEMBL
  ENSRNOT00000089142 UniProtKB/TrEMBL
  ENSRNOT00000089451 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7385142 IMAGE-MGC_LOAD
InterPro Mff-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mff/Tango-11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:301563 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112646 IMAGE-MGC_LOAD
NCBI Gene 301563 ENTREZGENE
PANTHER PTHR16501 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Miff UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mff PhenoGen
UniProt A0A0G2K2M2_RAT UniProtKB/TrEMBL
  A0A0G2KAL9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0H2UHM6 ENTREZGENE, UniProtKB/TrEMBL
  MFF_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Mff  mitochondrial fission factor  LOC102556337  mitochondrial fission factor-like  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102556337  mitochondrial fission factor-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Mff  mitochondrial fission factor  LOC100911613  mitochondrial fission factor-like  Data Merged 1643240 APPROVED
2012-07-05 LOC100911613  mitochondrial fission factor-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-12-10 Mff  mitochondrial fission factor  RGD1310230  similar to RIKEN cDNA 5230400G24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310230  similar to RIKEN cDNA 5230400G24  RGD1310230_predicted  similar to RIKEN cDNA 5230400G24 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310230_predicted  similar to RIKEN cDNA 5230400G24 (predicted)  LOC301563_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC301563_predicted  similar to RIKEN cDNA 5230400G24 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL