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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of synaptic vesicle recycling
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Accession:GO:1903421 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of synaptic vesicle recycling.
Comment:An example of this is mouse LRRK2 (Q5S006) in PMID:21307259 inferred from mutant phenotype
Synonyms:narrow_synonym: regulation of kiss-and-run synaptic vesicle recycling;   regulation of kiss-and-stay synaptic vesicle recycling


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regulation of synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf14 fibroblast growth factor 14 involved_in IMP PMID:23831029 MGI PMID:23831029 RGD:10047342 NCBI chr15:110,382,274...111,077,027
Ensembl chr15:110,385,217...110,612,681
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 IMP RGD PMID:21808019 RGD:13506237 NCBI chr10:55,675,171...55,679,405
Ensembl chr10:55,675,575...55,679,450
JBrowse link
negative regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt11 synaptotagmin 11 involved_in IMP PMID:26589353 ParkinsonsUK-UCL PMID:26589353 RGD:11079192 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177
JBrowse link
negative regulation of synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyfip1 cytoplasmic FMR1 interacting protein 1 IMP RGD PMID:26843638 RGD:11342679 NCBI chr 1:114,258,773...114,347,138
Ensembl chr 1:114,258,719...114,347,137
JBrowse link
G Stx1b syntaxin 1B involved_in ISO (MGI:5603022|PMID:24587181) RGD PMID:24587181 MGI:5603022 NCBI chr 1:199,251,842...199,270,465
Ensembl chr 1:199,251,844...199,270,627
JBrowse link
positive regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca13 ATP binding cassette subfamily A member 13 acts_upstream_of_or_within ISO (PMID:33293368) RGD PMID:33293368 NCBI chr14:89,384,512...89,876,748
Ensembl chr14:89,384,512...89,714,917
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IMP RGD PMID:19762466 RGD:13461856 NCBI chr11:84,041,184...84,047,542
Ensembl chr11:84,041,184...84,047,546
JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:17437541 RGD:8554440 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm1l dynamin 1-like involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:18445495 RGD:13462049 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mff mitochondrial fission factor involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:88,490,280...88,518,517
Ensembl chr 9:88,493,593...88,517,827
Ensembl chr 9:88,493,593...88,517,827
JBrowse link
G Nlgn1 neuroligin 1 involved_in IMP
ISO
PMID:19628693
(MGI:4355770|PMID:19628693)
RGD PMID:19628693, PMID:19628693 MGI:4355770, RGD:8554760 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:21808019 RGD:13506237 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IMP RGD PMID:26627835 RGD:11532172 NCBI chr15:51,896,427...51,968,075
Ensembl chr15:51,896,615...51,967,897
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:14532001 RGD:13464359 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:21808019 RGD:13506237 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Tor1a torsin family 1, member A involved_in ISS
ISO
GO_REF:0000024
(PMID:21102408)
UniProt
RGD
PMID:21102408 GO_REF:0000024 NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
JBrowse link
positive regulation of synaptic vesicle recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 IMP RGD PMID:17880892 RGD:8553820 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm3 dynamin 3 IMP RGD PMID:23687302 RGD:13462065 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) IMP RGD PMID:31074746 RGD:41408338 NCBI chr 4:16,454,904...17,058,921
Ensembl chr 4:16,454,904...17,058,921
JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO
GO_REF:0000024
(MGI:5883825|PMID:28413018)
UniProt
RGD
PMID:28413018 GO_REF:0000024 MGI:5883825 NCBI chr 5:113,548,913...113,578,928
Ensembl chr 5:113,548,913...113,578,928
JBrowse link
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gripap1 GRIP1 associated protein 1 involved_in IMP
IDA
IBA
PMID:20098723
PMID:21873635
SynGO
GO_Central
PMID:20098723, PMID:20098723, PMID:21873635 RGD:12050105, RGD:12050105, RGD:13792537 NCBI chr  X:15,523,929...15,553,702
Ensembl chr  X:15,523,929...15,553,720
JBrowse link
regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within ISO MGI:4127237 (MGI:5438074|PMID:22536397) RGD PMID:22536397 MGI:5438074 NCBI chr20:8,899,286...9,253,936
Ensembl chr20:8,901,931...9,249,820
JBrowse link
G Calm1 calmodulin 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:124,217,241...124,225,292
Ensembl chr 6:124,217,241...124,225,292
JBrowse link
G Calm2 calmodulin 2 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:11,067,675...11,080,078
Ensembl chr15:65,506,874...65,507,968
JBrowse link
G Calm3 calmodulin 3 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 1:78,844,520...78,851,628
Ensembl chr 1:78,843,080...78,851,719
JBrowse link
G Dgkq diacylglycerol kinase, theta involved_in ISO (MGI:5807028|PMID:26748701) RGD PMID:26748701 MGI:5807028 NCBI chr14:2,069,409...2,083,370
Ensembl chr14:2,069,409...2,083,370
JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:16648848 RGD:13504740 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (MGI:6189511|PMID:25501810) RGD PMID:25501810 MGI:6189511 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma involved_in ISO (MGI:3054280|PMID:15386003) RGD PMID:15386003 MGI:3054280 NCBI chr 7:11,267,207...11,294,291
Ensembl chr 7:11,267,218...11,294,249
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in IEA
ISO
GO_REF:0000107
(MGI:4830393|PMID:20810903)
Ensembl
RGD
PMID:20810903 GO_REF:0000107 MGI:4830393 NCBI chr15:4,209,702...4,236,895
Ensembl chr15:4,209,703...4,236,895
JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma involved_in IMP
IDA
PMID:26627835 SynGO PMID:26627835, PMID:26627835 RGD:11532172, RGD:11532172 NCBI chr15:51,896,427...51,968,075
Ensembl chr15:51,896,615...51,967,897
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:O60890 (PMID:27160703)
Ensembl
RGD
PMID:27160703 GO_REF:0000107 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Scamp5 secretory carrier membrane protein 5 involved_in IDA
IMP
PMID:25057210 SynGO PMID:25057210, PMID:25057210 RGD:13702419, RGD:13702419 NCBI chr 8:62,221,820...62,266,269
Ensembl chr 8:62,220,892...62,248,017
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:22750032 RGD:13463484 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Slc17a7 solute carrier family 17 member 7 IMP RGD PMID:16815333 RGD:13504741 NCBI chr 1:101,161,265...101,172,292
Ensembl chr 1:101,161,252...101,173,174
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:18842885 RGD:8554167 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Syt7 synaptotagmin 7 involved_in ISO (MGI:6189675|PMID:14532108) RGD PMID:14532108 MGI:6189675 NCBI chr 1:226,435,816...226,498,008
Ensembl chr 1:226,435,979...226,493,377
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
EXP
IMP
PMID:26607000 SynGO PMID:26607000, PMID:26607000, PMID:26607000 RGD:11058152, RGD:11058152, RGD:11058152 NCBI chr13:80,460,699...80,483,597
Ensembl chr13:80,460,694...80,483,600
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19633
    regulation of biological process 12859
      regulation of localization 3010
        regulation of transport 1989
          regulation of synaptic vesicle recycling 34
            negative regulation of synaptic vesicle recycling + 3
            positive regulation of synaptic vesicle recycling + 16
            regulation of recycling endosome localization within postsynapse 1
            regulation of synaptic vesicle endocytosis + 26
Path 2
Term Annotations click to browse term
  biological_process 19633
    localization 6435
      establishment of localization 4860
        transport 4697
          vesicle-mediated transport 1670
            vesicle-mediated transport in synapse 277
              synaptic vesicle cycle 249
                synaptic vesicle recycling 88
                  regulation of synaptic vesicle recycling 34
                    negative regulation of synaptic vesicle recycling + 3
                    positive regulation of synaptic vesicle recycling + 16
                    regulation of recycling endosome localization within postsynapse 1
                    regulation of synaptic vesicle endocytosis + 26
paths to the root