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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA processing
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Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification

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RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase RNA specific B1 involved_in ISO (PMID:32220291), (PMID:9149227) HGNC-UCL PMID:9149227 PMID:32220291 NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897 		JBrowse link
G Ddx54 DEAD-box helicase 54 involved_in ISO (PMID:12466272) UniProt PMID:12466272 NCBI chrNW_004955482:9,493,840...9,509,916
Ensembl chrNW_004955482:9,494,188...9,509,872 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:14528307)
(PMID:17804764)		 MGI PMID:14528307 PMID:17804764 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO (PMID:17174896) ComplexPortal PMID:17174896 NCBI chrNW_004955404:33,897,681...33,924,069
Ensembl chrNW_004955404:33,897,237...33,924,069 		JBrowse link
G Dis3l DIS3 like exosome 3'-5' exoribonuclease involved_in ISO (PMID:20531386) ComplexPortal PMID:20531386 NCBI chrNW_004955450:9,279,323...9,313,402
Ensembl chrNW_004955450:9,279,323...9,314,507 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO (PMID:17035636) UniProt PMID:17035636 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878 		JBrowse link
G Exosc1 exosome component 1 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955507:3,576,555...3,583,183
Ensembl chrNW_004955507:3,576,555...3,583,183 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876 		JBrowse link
G Exosc2 exosome component 2 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955513:639,798...648,360
Ensembl chrNW_004955513:639,731...651,418 		JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955419:28,683,896...28,692,006
Ensembl chrNW_004955419:28,683,896...28,693,395 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398 		JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955555:328,130...334,106
Ensembl chrNW_004955555:326,698...334,106 		JBrowse link
G Exosc6 exosome component 6 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955484:3,088,133...3,089,551
Ensembl chrNW_004955484:3,088,624...3,089,472 		JBrowse link
G Exosc7 exosome component 7 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955420:26,677,692...26,697,977
Ensembl chrNW_004955420:26,677,692...26,697,977 		JBrowse link
G Exosc8 exosome component 8 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955431:9,048,210...9,058,079
Ensembl chrNW_004955431:9,049,896...9,058,264 		JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756 		JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISO (PMID:26370583) UniProt PMID:26370583 NCBI chrNW_004955457:8,191,861...8,213,003
Ensembl chrNW_004955457:8,189,558...8,211,832 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO (PMID:21636784) UniProt PMID:21636784 NCBI chrNW_004955411:15,486,532...15,766,880
Ensembl chrNW_004955411:15,486,303...15,766,864 		JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (PMID:21266480) MGI PMID:21266480 NCBI chrNW_004955409:8,539,617...8,587,537 JBrowse link
G Zcchc8 zinc finger CCHC-type containing 8 involved_in ISO (PMID:31488579) UniProt PMID:31488579 NCBI chrNW_004955482:6,163,990...6,184,967 JBrowse link
G Znf830 zinc finger protein 830 involved_in ISO (MGI:4950701|PMID:21191184) UniProt PMID:21191184 MGI:4950701 NCBI chrNW_004955481:9,661,791...9,663,326
Ensembl chrNW_004955481:9,661,830...9,662,918 		JBrowse link
7-methylguanosine cap hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in ISO (PMID:16687569) BHF-UCL PMID:16687569 NCBI chrNW_004955454:14,896,085...14,937,678
Ensembl chrNW_004955454:14,896,085...14,934,414 		JBrowse link
7-methylguanosine mRNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in ISO (PMID:21310715)
(PMID:20713356)		 UniProt PMID:20713356 PMID:21310715 NCBI chrNW_004955437:5,721,420...5,766,316
Ensembl chrNW_004955437:5,722,352...5,765,730 		JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in ISO (PMID:21310715) UniProt PMID:21310715 NCBI chrNW_004955484:3,999,655...4,006,632
Ensembl chrNW_004955484:3,999,665...4,006,632 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:12434151) UniProt PMID:12434151 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in ISO (PMID:22099306) UniProt PMID:22099306 NCBI chrNW_004955416:13,686,997...13,691,792 JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO (PMID:9473487) UniProt PMID:9473487 NCBI chrNW_004955411:15,486,532...15,766,880
Ensembl chrNW_004955411:15,486,303...15,766,864 		JBrowse link
G Rnmt RNA guanine-7 methyltransferase involved_in ISO (PMID:27422871)
(PMID:9790902)		 UniProt PMID:9790902 PMID:27422871 NCBI chrNW_004955402:319,520...344,129 JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk13 cyclin dependent kinase 13 involved_in ISO (MGI:3699439|PMID:17261272) UniProt PMID:17261272 MGI:3699439 NCBI chrNW_004955460:3,590,854...3,701,148 JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:19720736) MGI PMID:19720736 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO (PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)		 UniProt PMID:24275493 PMID:24910439 MGI:5883203 NCBI chrNW_004955413:24,646,317...24,664,614
Ensembl chrNW_004955413:24,646,320...24,664,614 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)		 UniProt PMID:24275493 PMID:24910439 MGI:5883203 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28221134) UniProt PMID:28221134 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004955417:10,813,831...10,881,238
Ensembl chrNW_004955417:10,813,593...10,882,921 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004955484:8,426,453...8,433,902
Ensembl chrNW_004955484:8,426,453...8,433,893 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in ISO (PMID:19874820) BHF-UCL PMID:19874820 NCBI chrNW_004955563:933,824...975,064 JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:19075228)
(PMID:19720736)		 MGI PMID:19075228 PMID:19720736 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in ISO (PMID:23512658)
(MGI:5477858|PMID:23512658)		 UniProt PMID:23512658 MGI:5477858 NCBI chrNW_004955543:430,324...434,205
Ensembl chrNW_004955543:430,853...434,205 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in ISO (PMID:17589525) UniProt PMID:17589525 NCBI chrNW_004955421:22,732,757...22,745,926
Ensembl chrNW_004955421:22,732,757...22,746,014 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004955448:8,947,553...9,249,465
Ensembl chrNW_004955448:8,951,336...9,326,257 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO (PMID:19874820) BHF-UCL PMID:19874820 NCBI chrNW_004955452:13,267,968...13,283,823 JBrowse link
G Sfswap splicing factor SWAP acts_upstream_of_or_within ISO (PMID:8940107) MGI PMID:8940107 NCBI chrNW_004955482:808,684...871,377
Ensembl chrNW_004955482:808,632...871,402 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO (PMID:15728250) HGNC-UCL PMID:15728250 NCBI chrNW_004955408:14,268,958...14,288,114
Ensembl chrNW_004955408:14,267,369...14,288,213 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107) RGD
GO_Central		 PMID:8940107 PMID:23462647 RGD:11038736 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO (PMID:22767602) UniProt PMID:22767602 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (PMID:33230114) MGI PMID:33230114 NCBI chrNW_004955413:12,533,422...12,558,138
Ensembl chrNW_004955413:12,533,423...12,559,288 		JBrowse link
box C/D sno(s)RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO (PMID:32017898)
(MGI:6400674|PMID:32017896)		 UniProt PMID:32017896 PMID:32017898 MGI:6400674 NCBI chrNW_004955457:14,178,674...14,200,164
Ensembl chrNW_004955457:14,178,947...14,192,193 		JBrowse link
box H/ACA sno(s)RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) UniProt PMID:22442037 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) UniProt PMID:17353269 MGI:3843427 NCBI chrNW_004955454:2,882,694...2,907,177
Ensembl chrNW_004955454:2,882,755...2,907,081 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:9742256 RGD:11535027 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:8929409) UniProt PMID:8929409 NCBI chrNW_004955487:5,146,541...5,170,077
Ensembl chrNW_004955487:5,146,541...5,170,077 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:29276085) UniProt PMID:29276085 NCBI chrNW_004955458:15,684,040...15,708,011
Ensembl chrNW_004955458:15,677,645...15,708,011 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:29276085) UniProt PMID:29276085 NCBI chrNW_004955511:6,139,118...6,161,130
Ensembl chrNW_004955511:6,139,118...6,161,130 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in ISO (PMID:7984242) UniProt PMID:7984242 NCBI chrNW_004955422:13,049,908...13,124,274
Ensembl chrNW_004955422:13,050,088...13,123,784 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO (PMID:29276085) UniProt PMID:29276085 NCBI chrNW_004955433:14,220,356...14,234,423
Ensembl chrNW_004955433:14,216,974...14,234,611 		JBrowse link
G Papola poly(A) polymerase alpha involved_in ISO (PMID:19224921) UniProt PMID:19224921 NCBI chrNW_004955438:18,267,515...18,334,379
Ensembl chrNW_004955438:18,267,517...18,335,148 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in ISO (PMID:20861839) UniProt PMID:20861839 NCBI chrNW_004955486:9,317,078...9,338,414
Ensembl chrNW_004955486:9,317,078...9,338,414 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:21102410) UniProt PMID:21102410 NCBI chrNW_004955599:596,565...606,498
Ensembl chrNW_004955599:596,650...606,486 		JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in ISO (PMID:25288793) UniProt PMID:25288793 NCBI chrNW_004955450:10,399,472...10,415,813
Ensembl chrNW_004955450:10,399,470...10,415,872 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004955523:801,117...818,521
Ensembl chrNW_004955523:798,672...818,752 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004955434:9,073,643...9,137,387
Ensembl chrNW_004955434:9,073,525...9,137,678 		JBrowse link
G Utp23 UTP23 small subunit processome component acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004955417:22,859,914...22,867,633 JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004955523:801,117...818,521
Ensembl chrNW_004955523:798,672...818,752 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004955434:9,073,643...9,137,387
Ensembl chrNW_004955434:9,073,525...9,137,678 		JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sde2 SDE2 telomere maintenance homolog involved_in ISO (PMID:34365507) UniProt PMID:34365507 NCBI chrNW_004955489:181,425...210,966
Ensembl chrNW_004955489:180,414...210,900 		JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25219674) UniProt PMID:25219674 NCBI chrNW_004955594:846,997...857,255
Ensembl chrNW_004955594:847,815...856,510 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) UniProt PMID:27084949 NCBI chrNW_004955442:15,881,663...15,884,222
Ensembl chrNW_004955442:15,881,678...15,884,008 		JBrowse link
lncRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmt1a thiol methyltransferase 1A involved_in ISO (PMID:34980213) UniProt PMID:34980213 NCBI chrNW_004955547:1,356,530...1,365,189 JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1d C1D nuclear receptor corepressor involved_in ISO (PMID:17412707) UniProt PMID:17412707 NCBI chrNW_004955424:16,787,094...16,801,600
Ensembl chrNW_004955424:16,786,397...16,802,872 		JBrowse link
G Eri1 exoribonuclease 1 involved_in ISO (PMID:37352860) UniProt PMID:37352860 NCBI chrNW_004955463:5,074,921...5,104,341
Ensembl chrNW_004955463:5,075,105...5,102,892 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17412707), (PMID:20368444) UniProt PMID:17412707 PMID:20368444 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:20368444) UniProt PMID:20368444 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398 		JBrowse link
G Mphosph6 M-phase phosphoprotein 6 involved_in ISO (PMID:17412707) UniProt PMID:17412707 NCBI chrNW_004955564:1,866,924...1,877,884
Ensembl chrNW_004955564:1,866,924...1,881,334 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO (PMID:17412707) UniProt PMID:17412707 NCBI chrNW_004955446:12,270,338...12,362,064
Ensembl chrNW_004955446:12,270,344...12,362,882 		JBrowse link
G Nol9 nucleolar protein 9 involved_in ISO (PMID:21063389) UniProt PMID:21063389 NCBI chrNW_004955486:6,066,093...6,079,756
Ensembl chrNW_004955486:6,066,136...6,079,117 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) UniProt PMID:32103174 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867 		JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in ISO (PMID:16738141) UniProt PMID:16738141 NCBI chrNW_004955455:4,794,189...4,808,235
Ensembl chrNW_004955455:4,792,182...4,808,258 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO (PMID:16043514) UniProt PMID:16043514 NCBI chrNW_004955457:11,947,816...11,970,066
Ensembl chrNW_004955457:11,947,915...11,971,805 		JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (PMID:17353269) UniProt PMID:17353269 NCBI chrNW_004955454:2,882,694...2,907,177
Ensembl chrNW_004955454:2,882,755...2,907,081 		JBrowse link
G Gtpbp4 GTP binding protein 4 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004955492:5,594...33,558
Ensembl chrNW_004955492:5,594...34,111 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:16738141), (PMID:17353269)
(PMID:25190460)		 UniProt
MGI		 PMID:16738141 PMID:17353269 PMID:25190460 NCBI chrNW_004955455:4,794,189...4,808,235
Ensembl chrNW_004955455:4,792,182...4,808,258 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO (PMID:16043514), (PMID:17353269) UniProt PMID:16043514 PMID:17353269 NCBI chrNW_004955457:11,947,816...11,970,066
Ensembl chrNW_004955457:11,947,915...11,971,805 		JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032), (PMID:37246770) UniProt PMID:22916032 PMID:37246770 NCBI chrNW_004955478:6,863,203...6,891,549
Ensembl chrNW_004955478:6,863,635...6,892,743 		JBrowse link
G Nol7 nucleolar protein 7 involved_in ISO (PMID:37246770) UniProt PMID:37246770 NCBI chrNW_004955465:1,123,455...1,127,529
Ensembl chrNW_004955465:1,123,518...1,127,433 		JBrowse link
G Riok1 RIO kinase 1 involved_in ISO (PMID:22072790) UniProt PMID:22072790 NCBI chrNW_004955465:6,487,078...6,506,108
Ensembl chrNW_004955465:6,487,078...6,506,108 		JBrowse link
G Riok2 RIO kinase 2 involved_in ISO (PMID:19564402) UniProt PMID:19564402 NCBI chrNW_004955418:15,487,248...15,509,490
Ensembl chrNW_004955418:15,487,248...15,513,831 		JBrowse link
G Riok3 RIO kinase 3 involved_in ISO (PMID:22418843) UniProt PMID:22418843 NCBI chrNW_004955402:11,649,160...11,670,010
Ensembl chrNW_004955402:11,648,849...11,672,545 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chrNW_004955555:969,345...976,122
Ensembl chrNW_004955555:969,340...976,509 		JBrowse link
G Utp4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) UniProt PMID:22916032 NCBI chrNW_004955484:7,501,784...7,531,757
Ensembl chrNW_004955484:7,500,613...7,531,198 		JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bysl bystin like acts_upstream_of_or_within ISO (PMID:17242206) MGI PMID:17242206 NCBI chrNW_004955437:8,257,081...8,266,627
Ensembl chrNW_004955437:8,257,081...8,266,875 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955439:4,226,530...4,234,390
Ensembl chrNW_004955439:4,226,530...4,234,261 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chrNW_004955555:969,345...976,122
Ensembl chrNW_004955555:969,340...976,509 		JBrowse link
miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific acts_upstream_of_or_within ISO (PMID:23622242) MGI PMID:23622242 NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938 		JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:22795694) BHF-UCL PMID:22795694 NCBI chrNW_004955452:13,935,028...13,967,281
Ensembl chrNW_004955452:13,934,346...13,968,624 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:19966796), (PMID:23661684)
(PMID:20424607)		 BHF-UCL
MGI		 PMID:19966796 PMID:20424607 PMID:23661684 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:22795694) BHF-UCL PMID:22795694 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259 		JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:22795694) BHF-UCL PMID:22795694 NCBI chrNW_004955452:13,882,416...13,922,590
Ensembl chrNW_004955452:13,882,416...13,922,590 		JBrowse link
G Dicer1 dicer 1, ribonuclease III involved_in
acts_upstream_of_or_within		 ISO (PMID:23322395), (PMID:26435691)
(PMID:16462742)
(PMID:16040801)
(PMID:15713842)
(MGI:4454581|PMID:20463238), (MGI:4830414|PMID:20805985), (MGI:5527004|PMID:24209619)
(PMID:15973356), (PMID:23661684)		 ARUK-UCL
MGI
BHF-UCL
UniProt		 PMID:15713842 PMID:15973356 PMID:16040801 PMID:16462742 PMID:20463238 More... MGI:4454581 MGI:4830414 MGI:5527004 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within_positive_effect ISO (PMID:31481660) MGI PMID:31481660 NCBI chrNW_004955426:21,997,208...22,057,205
Ensembl chrNW_004955426:21,997,208...22,057,205 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:23661684) BHF-UCL PMID:23661684 NCBI chrNW_004955403:18,394,609...18,410,381
Ensembl chrNW_004955403:18,373,375...18,410,627 		JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955452:9,487,725...9,623,565
Ensembl chrNW_004955452:9,487,725...9,624,066 		JBrowse link
G Pum2 pumilio RNA binding family member 2 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955469:2,810,825...2,886,911
Ensembl chrNW_004955469:2,810,573...2,886,611 		JBrowse link
G Rbm3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (PMID:15684048) MGI PMID:15684048 NCBI chrNW_004955543:166,891...173,987
Ensembl chrNW_004955543:166,891...170,488 		JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in ISO (PMID:18632581) UniProt PMID:18632581 NCBI chrNW_004955452:15,352,080...15,365,545
Ensembl chrNW_004955452:15,353,182...15,365,459 		JBrowse link
G Spout1 SPOUT domain containing methyltransferase 1 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955570:1,202,987...1,211,052
Ensembl chrNW_004955570:1,204,040...1,211,020 		JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356), (PMID:23661684) UniProt PMID:15973356 PMID:23661684 NCBI chrNW_004955458:793,753...798,755
Ensembl chrNW_004955458:793,759...798,806 		JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432 		JBrowse link
G Zc3h7a zinc finger CCCH-type containing 7A involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955442:6,847,224...6,884,537
Ensembl chrNW_004955442:6,853,936...6,886,079 		JBrowse link
G Zc3h7b zinc finger CCCH-type containing 7B involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955413:26,907,883...26,951,352
Ensembl chrNW_004955413:26,925,943...26,951,040 		JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) UniProt PMID:18083837 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992 		JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISO (PMID:28335001) UniProt PMID:28335001 NCBI chrNW_004955456:7,197,690...7,207,102
Ensembl chrNW_004955456:7,199,560...7,208,808 		JBrowse link
mitochondrial RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:21292163) UniProt PMID:21292163 NCBI chrNW_004955429:21,768,011...21,792,481
Ensembl chrNW_004955429:21,767,547...21,794,885 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) UniProt PMID:18083837 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362 		JBrowse link
mitochondrial RNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) UniProt PMID:18083837 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:21593607) UniProt PMID:21593607 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
mitochondrial RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastkd5 FAST kinase domains 5 involved_in ISO (PMID:25683715) UniProt PMID:25683715 NCBI chrNW_004955415:14,052,009...14,063,208
Ensembl chrNW_004955415:14,052,406...14,054,850 		JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in ISO (PMID:21593607) UniProt PMID:21593607 NCBI chrNW_004955467:4,406,947...4,428,769
Ensembl chrNW_004955467:4,406,824...4,427,780 		JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 involved_in ISO (PMID:29040705) UniProt PMID:29040705 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) UniProt PMID:29040705 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO (PMID:11504732) UniProt PMID:11504732 NCBI chrNW_004955421:10,192,065...10,211,527
Ensembl chrNW_004955421:10,189,469...10,211,434 		JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 involved_in ISO (PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705), (PMID:29880640) UniProt PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 PMID:29880640 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029 		JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in ISO (PMID:25953853), (PMID:29880640) ComplexPortal PMID:25953853 PMID:29880640 NCBI chrNW_004955409:25,791,209...25,920,651
Ensembl chrNW_004955409:25,791,575...25,920,077 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705), (PMID:29880640) ComplexPortal PMID:29040705 PMID:29880640 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 involved_in ISO (PMID:23042678), (PMID:25925575), (PMID:28888424) UniProt PMID:23042678 PMID:25925575 PMID:28888424 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) ComplexPortal PMID:23042678 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO (PMID:26189817) UniProt PMID:26189817 NCBI chrNW_004955466:8,679,795...8,690,203
Ensembl chrNW_004955466:8,680,429...8,685,942 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO (PMID:25738458) MGI PMID:25738458 NCBI chrNW_004955422:27,878,048...27,907,157
Ensembl chrNW_004955422:27,879,389...27,906,861 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131) UniProt PMID:34774131 NCBI chrNW_004955449:3,458,683...3,534,377
Ensembl chrNW_004955449:3,490,568...3,533,584 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:24901367), (PMID:34774131) UniProt PMID:24901367 PMID:34774131 NCBI chrNW_004955452:17,330,446...17,378,579
Ensembl chrNW_004955452:17,330,446...17,378,579 		JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:27132592) UniProt PMID:27132592 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
G Trmt61b tRNA methyltransferase 61B involved_in ISO (PMID:23097428) UniProt PMID:23097428 NCBI chrNW_004955469:10,744,814...10,771,560
Ensembl chrNW_004955469:10,744,862...10,771,686 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) FlyBase PMID:28082677 NCBI chrNW_004955412:27,231,371...27,239,366
Ensembl chrNW_004955412:27,229,492...27,239,339 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within ISO (PMID:14522080) MGI PMID:14522080 NCBI chrNW_004955493:8,636,093...8,655,090
Ensembl chrNW_004955493:8,636,110...8,649,721 		JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in ISO (PMID:21329879) UniProt PMID:21329879 NCBI chrNW_004955406:30,533,919...30,665,812
Ensembl chrNW_004955406:30,533,060...30,665,812 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:30507380) UniProt PMID:30507380 NCBI chrNW_004955487:5,146,541...5,170,077
Ensembl chrNW_004955487:5,146,541...5,170,077 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905) ComplexPortal PMID:20695905 NCBI chrNW_004955458:15,684,040...15,708,011
Ensembl chrNW_004955458:15,677,645...15,708,011 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:20695905) ComplexPortal PMID:20695905 NCBI chrNW_004955511:6,139,118...6,161,130
Ensembl chrNW_004955511:6,139,118...6,161,130 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:21329879) UniProt PMID:21329879 NCBI chrNW_004955409:2,711,475...2,727,879
Ensembl chrNW_004955409:2,711,564...2,727,755 		JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO (PMID:30507380) UniProt PMID:30507380 NCBI chrNW_004955573:745,202...747,402
Ensembl chrNW_004955573:745,202...747,402 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO (PMID:15937220), (PMID:20695905) ComplexPortal PMID:15937220 PMID:20695905 NCBI chrNW_004955433:14,220,356...14,234,423
Ensembl chrNW_004955433:14,216,974...14,234,611 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:21329879) UniProt PMID:21329879 NCBI chrNW_004955468:166,477...172,200 JBrowse link
G Papola poly(A) polymerase alpha involved_in ISO (PMID:7590244) UniProt PMID:7590244 NCBI chrNW_004955438:18,267,515...18,334,379
Ensembl chrNW_004955438:18,267,517...18,335,148 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO (PMID:15070731) UniProt PMID:15070731 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) UniProt PMID:28383716 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:18288197) UniProt PMID:18288197 NCBI chrNW_004955599:596,565...606,498
Ensembl chrNW_004955599:596,650...606,486 		JBrowse link
G Zc3h3 zinc finger CCCH-type containing 3 acts_upstream_of_or_within ISO (PMID:16115198) MGI PMID:16115198 NCBI chrNW_004955454:2,145,605...2,239,643
Ensembl chrNW_004955454:2,142,062...2,239,518 		JBrowse link
G Zcchc8 zinc finger CCHC-type containing 8 involved_in ISO (PMID:31488579) UniProt PMID:31488579 NCBI chrNW_004955482:6,163,990...6,184,967 JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in ISO (PMID:18688255) UniProt PMID:18688255 NCBI chrNW_004955438:14,449,320...14,483,003
Ensembl chrNW_004955438:14,452,943...14,483,199 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:18688255)
(MGI:4418605|PMID:18955505)		 UniProt PMID:18688255 PMID:18955505 MGI:4418605 NCBI chrNW_004955487:5,146,541...5,170,077
Ensembl chrNW_004955487:5,146,541...5,170,077 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO (MGI:2676509|PMID:12975319)
(PMID:33230297)		 UniProt PMID:12975319 PMID:33230297 MGI:2676509 NCBI chrNW_004955408:11,871,335...11,879,041
Ensembl chrNW_004955408:11,870,524...11,879,041 		JBrowse link
G Slbp stem-loop histone mRNA binding protein involved_in ISO (MGI:4353869|PMID:19470752) UniProt PMID:19470752 MGI:4353869 NCBI chrNW_004955514:954,489...968,670
Ensembl chrNW_004955514:955,296...967,327 		JBrowse link
G Znf473 zinc finger protein 473 involved_in ISO (PMID:16714279) UniProt PMID:16714279 NCBI chrNW_004955559:911,785...932,510
Ensembl chrNW_004955559:908,036...918,979 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slu7 SLU7 homolog, splicing factor involved_in ISO (PMID:15728250) HGNC-UCL PMID:15728250 NCBI chrNW_004955408:14,268,958...14,288,114
Ensembl chrNW_004955408:14,267,369...14,288,213 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in ISO (PMID:9885563) UniProt PMID:9885563 NCBI chrNW_004955434:18,312,646...18,357,753
Ensembl chrNW_004955434:18,312,646...18,357,761 		JBrowse link
G Sfswap splicing factor SWAP acts_upstream_of_or_within ISO (PMID:8940107) MGI PMID:8940107 NCBI chrNW_004955482:808,684...871,377
Ensembl chrNW_004955482:808,632...871,402 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) GO_Central PMID:8940107 PMID:9885563 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) UniProt PMID:11684676 NCBI chrNW_004955411:15,851,482...15,918,864 JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905), (PMID:23187700), (PMID:29276085) UniProt PMID:20695905 PMID:23187700 PMID:29276085 NCBI chrNW_004955458:15,684,040...15,708,011
Ensembl chrNW_004955458:15,677,645...15,708,011 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:20695905), (PMID:29276085) UniProt PMID:20695905 PMID:29276085 NCBI chrNW_004955511:6,139,118...6,161,130
Ensembl chrNW_004955511:6,139,118...6,161,130 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO (PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085) UniProt PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 NCBI chrNW_004955433:14,220,356...14,234,423
Ensembl chrNW_004955433:14,216,974...14,234,611 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 ISO RGD PMID:34731606 RGD:329845875 NCBI chrNW_004955413:22,034,048...22,288,430
Ensembl chrNW_004955413:22,035,837...22,287,763 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 acts_upstream_of_or_within ISO (PMID:29799838) MGI PMID:29799838 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH9orf78 chromosome unknown C9orf78 homolog involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chrNW_004955513:38,060...43,450
Ensembl chrNW_004955513:38,060...43,450 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISO (PMID:18426921) UniProt PMID:18426921 NCBI chrNW_004955412:27,326,946...27,367,455
Ensembl chrNW_004955412:27,326,971...27,367,342 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:18426921) UniProt PMID:18426921 NCBI chrNW_004955420:12,979,368...12,992,500
Ensembl chrNW_004955420:12,979,368...12,992,500 		JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO (PMID:22246180) UniProt PMID:22246180 NCBI chrNW_004955415:3,895,272...3,905,801 JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in ISO (PMID:34365507) UniProt PMID:34365507 NCBI chrNW_004955489:181,425...210,966
Ensembl chrNW_004955489:180,414...210,900 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO (PMID:19592703) UniProt PMID:19592703 NCBI chrNW_004955404:51,046,245...51,094,245
Ensembl chrNW_004955404:51,046,177...51,084,272 		JBrowse link
mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:17594903) UniProt PMID:17594903 NCBI chrNW_004955495:7,839,339...7,874,432
Ensembl chrNW_004955495:7,839,339...7,874,432 		JBrowse link
G Cbll1 Cbl proto-oncogene like 1 involved_in ISO (PMID:29507755) UniProt PMID:29507755 NCBI chrNW_004955410:12,078,448...12,093,641
Ensembl chrNW_004955410:12,078,452...12,093,641 		JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in ISO (PMID:36537238) UniProt PMID:36537238 NCBI chrNW_004955550:2,115,649...2,175,687
Ensembl chrNW_004955550:2,115,649...2,175,181 		JBrowse link
G Cmtr1 cap methyltransferase 1 involved_in ISO (PMID:20713356) UniProt PMID:20713356 NCBI chrNW_004955437:5,721,420...5,766,316
Ensembl chrNW_004955437:5,722,352...5,765,730 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:14690600) UniProt PMID:14690600 NCBI chrNW_004955458:15,684,040...15,708,011
Ensembl chrNW_004955458:15,677,645...15,708,011 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:2557628) HGNC-UCL PMID:2557628 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 ISO RGD PMID:11118435 RGD:632715 NCBI chrNW_004955461:9,751,057...9,926,211
Ensembl chrNW_004955461:9,751,057...9,915,943 		JBrowse link
G LOC102021406 histone H2A involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chrNW_004955593:911,641...911,919 JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:24316715)
(PMID:27281194), (PMID:27373337), (PMID:27627798)		 UniProt PMID:24316715 PMID:27281194 PMID:27373337 PMID:27627798 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:30197297), (PMID:30197299), (PMID:33428944) UniProt PMID:30197297 PMID:30197299 PMID:33428944 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5527005|PMID:24209618)
(PMID:22575960), (PMID:24284625), (PMID:25719671)
(PMID:24316715), (PMID:27281194), (PMID:27373337), (PMID:27627798), (PMID:28297716)		 UniProt PMID:22575960 PMID:24209618 PMID:24284625 PMID:24316715 PMID:25719671 More... MGI:5527005 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:22395603), (PMID:28418038), (PMID:31358969) UniProt PMID:22395603 PMID:28418038 PMID:31358969 NCBI chrNW_004955504:4,339,044...4,360,176
Ensembl chrNW_004955504:4,338,855...4,361,520 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO (PMID:8626397) UniProt PMID:8626397 NCBI chrNW_004955433:14,220,356...14,234,423
Ensembl chrNW_004955433:14,216,974...14,234,611 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 involved_in ISO (PMID:30467178), (PMID:30487554), (PMID:31279658), (PMID:31279659), (PMID:33428944) UniProt PMID:30467178 PMID:30487554 PMID:31279658 PMID:31279659 PMID:33428944 NCBI chrNW_004955445:11,355,227...11,368,392
Ensembl chrNW_004955445:11,355,227...11,368,392 		JBrowse link
G Phrf1 PHD and ring finger domains 1 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004955476:11,446,194...11,476,892
Ensembl chrNW_004955476:11,446,376...11,477,530 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO (PMID:17594903) UniProt PMID:17594903 NCBI chrNW_004955415:32,794,172...32,807,944
Ensembl chrNW_004955415:32,793,718...32,812,930 		JBrowse link
G Prmt9 protein arginine methyltransferase 9 involved_in ISO (PMID:25737013) UniProt PMID:25737013 NCBI chrNW_004955428:3,215,335...3,243,569
Ensembl chrNW_004955428:3,215,335...3,243,569 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:16177139 RGD:10045980 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492 		JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:21253564 RGD:10045996 NCBI chrNW_004955439:17,925,205...18,079,727
Ensembl chrNW_004955439:17,925,229...18,079,727 		JBrowse link
G Scaf1 SR-related CTD associated factor 1 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004955559:1,229,479...1,234,563 JBrowse link
G Scaf4 SR-related CTD associated factor 4 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004955407:31,269,673...31,303,823
Ensembl chrNW_004955407:31,270,035...31,303,823 		JBrowse link
G Scaf8 SR-related CTD associated factor 8 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004955439:7,282,264...7,361,855
Ensembl chrNW_004955439:7,282,264...7,333,560 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in ISO (PMID:15647371) HGNC-UCL PMID:15647371 NCBI chrNW_004955455:4,579,153...4,601,942
Ensembl chrNW_004955455:4,577,329...4,602,141 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in ISO (PMID:15647371) HGNC-UCL PMID:15647371 NCBI chrNW_004955495:5,896,648...5,904,287
Ensembl chrNW_004955495:5,896,648...5,904,056 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in ISO (PMID:15647371) HGNC-UCL PMID:15647371 NCBI chrNW_004955452:15,691,729...15,715,782
Ensembl chrNW_004955452:15,691,497...15,716,524 		JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:21504830) UniProt PMID:21504830 NCBI chrNW_004955407:32,974,656...33,007,073
Ensembl chrNW_004955407:32,974,725...33,006,297 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in ISO (MGI:4414616|PMID:19737518) UniProt PMID:19737518 MGI:4414616 NCBI chrNW_004955455:12,318,529...12,473,420
Ensembl chrNW_004955455:12,318,529...12,473,647 		JBrowse link
G Tcerg1 transcription elongation regulator 1 involved_in ISO (PMID:20215116) ARUK-UCL PMID:20215116 NCBI chrNW_004955415:7,597,557...7,665,215
Ensembl chrNW_004955415:7,597,557...7,663,207 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29072297) UniProt PMID:29072297 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
G Trmt6 tRNA methyltransferase 6 non-catalytic subunit involved_in ISO (PMID:29072297), (PMID:29107537) UniProt PMID:29072297 PMID:29107537 NCBI chrNW_004955415:16,333,766...16,390,112
Ensembl chrNW_004955415:16,330,482...16,344,973 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in ISO (PMID:29072297), (PMID:29107537) UniProt PMID:29072297 PMID:29107537 NCBI chrNW_004955538:2,383,666...2,393,667
Ensembl chrNW_004955538:2,383,666...2,396,402 		JBrowse link
G Trmt61b tRNA methyltransferase 61B involved_in ISO (PMID:29107537) UniProt PMID:29107537 NCBI chrNW_004955469:10,744,814...10,771,560
Ensembl chrNW_004955469:10,744,862...10,771,686 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO (PMID:29507755)
(PMID:24981863)		 UniProt PMID:24981863 PMID:29507755 NCBI chrNW_004955417:10,690,128...10,759,808
Ensembl chrNW_004955417:10,686,136...10,759,805 		JBrowse link
G Wtap WT1 associated protein involved_in ISO (PMID:24316715), (PMID:24407421), (PMID:24981863) UniProt PMID:24316715 PMID:24407421 PMID:24981863 NCBI chrNW_004955439:21,149,970...21,174,479
Ensembl chrNW_004955439:21,146,206...21,182,486 		JBrowse link
G Zc3h13 zinc finger CCCH-type containing 13 involved_in ISO (PMID:29507755) UniProt PMID:29507755 NCBI chrNW_004955518:3,657,054...3,740,176
Ensembl chrNW_004955518:3,658,723...3,731,174 		JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP Elav-like family member 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314) UniProt
MGI		 PMID:11158314 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647 		JBrowse link
G Celf2 CUGBP Elav-like family member 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314) UniProt
MGI		 PMID:11158314 NCBI chrNW_004955421:27,064,497...27,374,850
Ensembl chrNW_004955421:26,992,734...27,374,850 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:11158314) MGI PMID:11158314 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) UniProt PMID:19641227 NCBI chrNW_004955545:2,100,440...2,120,412
Ensembl chrNW_004955545:2,100,440...2,120,411 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:14671308), (PMID:16717059) MGI PMID:14671308 PMID:16717059 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Nol3 nucleolar protein 3 involved_in ISO (PMID:10196175) UniProt PMID:10196175 NCBI chrNW_004955484:9,443,090...9,447,142
Ensembl chrNW_004955484:9,443,090...9,447,095 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within ISO (PMID:10829067)
(PMID:22802532)		 MGI PMID:10829067 PMID:22802532 NCBI chrNW_004955435:1,703,588...1,773,016
Ensembl chrNW_004955435:1,702,962...1,774,334 		JBrowse link
G Rbmx RNA binding motif protein X-linked ISO RGD PMID:19282290 RGD:2316827 NCBI chrNW_004955489:8,280,842...8,286,252
Ensembl chrNW_004955489:8,280,794...8,286,252 		JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) UniProt PMID:19515850 NCBI chrNW_004955513:1,718,432...1,776,133
Ensembl chrNW_004955513:1,718,377...1,777,021 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) UniProt PMID:9774382 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO (PMID:12549914) UniProt PMID:12549914 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISO (PMID:20167602) UniProt PMID:20167602 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:20625543), (PMID:21317875)
(PMID:11779464), (PMID:19328063), (PMID:19622636), (PMID:21317875)		 ParkinsonsUK-UCL PMID:11779464 PMID:19328063 PMID:19622636 PMID:20625543 PMID:21317875 NCBI chrNW_004955478:7,720,664...7,803,662
Ensembl chrNW_004955478:7,751,830...7,799,460 		JBrowse link
mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqr aquarius intron-binding spliceosomal factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955416:2,214,990...2,304,924
Ensembl chrNW_004955416:2,215,490...2,304,726 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955435:17,830,532...17,857,360
Ensembl chrNW_004955435:17,846,466...17,857,356 		JBrowse link
G Bud13 BUD13 homolog involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955412:18,095,069...18,113,386
Ensembl chrNW_004955412:18,095,375...18,113,054 		JBrowse link
G Bud31 BUD31 homolog involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955460:15,083,472...15,092,217
Ensembl chrNW_004955460:15,083,472...15,092,217 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:28062851) UniProt PMID:28062851 NCBI chrNW_004955495:5,561,359...5,571,945
Ensembl chrNW_004955495:5,561,979...5,571,682 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955451:14,784,915...14,804,191
Ensembl chrNW_004955451:14,784,915...14,806,773 		JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:28076346)
(PMID:33220177)		 UniProt PMID:28076346 PMID:33220177 NCBI chrNW_004955411:34,966,797...35,007,577
Ensembl chrNW_004955411:34,966,339...35,007,558 		JBrowse link
G Cdc5l cell division cycle 5 like involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955437:9,990,613...10,032,034
Ensembl chrNW_004955437:9,990,613...10,032,034 		JBrowse link
G Cenatac centrosomal AT-AC splicing factor involved_in ISO (PMID:34009673) UniProt PMID:34009673 NCBI chrNW_004955412:20,113,844...20,126,783
Ensembl chrNW_004955412:20,113,375...20,126,656 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955415:28,158,351...28,171,335
Ensembl chrNW_004955415:28,158,351...28,172,055 		JBrowse link
G Cwc15 CWC15 spliceosome associated protein homolog involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955605:32,721...42,981
Ensembl chrNW_004955605:32,721...46,182 		JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955403:17,070,588...17,125,918
Ensembl chrNW_004955403:17,083,414...17,125,982 		JBrowse link
G Cwc25 CWC25 spliceosome associated protein homolog involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955451:13,867,570...13,884,433
Ensembl chrNW_004955451:13,868,845...13,884,267 		JBrowse link
G Ddx39a DExD-box helicase 39A involved_in ISO (PMID:15047853) UniProt PMID:15047853 NCBI chrNW_004955415:33,021,976...33,030,479
Ensembl chrNW_004955415:33,019,997...33,030,177 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:15047853) UniProt PMID:15047853 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384 		JBrowse link
G Ddx41 DEAD-box helicase 41 involved_in ISO (PMID:25920683) UniProt PMID:25920683 NCBI chrNW_004955408:29,748,091...29,753,610
Ensembl chrNW_004955408:29,744,751...29,754,497 		JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISO (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955408:29,981,509...30,031,473
Ensembl chrNW_004955408:29,981,229...30,031,473 		JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in ISO (PMID:29360106)
(PMID:20423332), (PMID:25296192)		 UniProt PMID:20423332 PMID:25296192 PMID:29360106 NCBI chrNW_004955583:657,425...668,390
Ensembl chrNW_004955583:654,921...668,392 		JBrowse link
G Dhx38 DEAH-box helicase 38 involved_in ISO (PMID:9524131) UniProt PMID:9524131 NCBI chrNW_004955484:4,752,834...4,770,843
Ensembl chrNW_004955484:4,752,834...4,770,843 		JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955451:16,941,422...16,963,690
Ensembl chrNW_004955451:16,941,215...16,965,093 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955451:17,655,659...17,690,117
Ensembl chrNW_004955451:17,653,125...17,690,117 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873 		JBrowse link
G Ess2 ess-2 splicing factor homolog involved_in ISO (PMID:34694367) UniProt PMID:34694367 NCBI chrNW_004955442:18,829,037...18,840,542
Ensembl chrNW_004955442:18,828,976...18,840,542 		JBrowse link
G Fra10ac1 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 involved_in ISO (PMID:34694367) UniProt PMID:34694367 NCBI chrNW_004955507:182,212...242,313 JBrowse link
G Gpkow G-patch domain and KOW motifs involved_in ISO (PMID:25296192) UniProt PMID:25296192 NCBI chrNW_004955543:625,247...633,065 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:26321680) UniProt PMID:26321680 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:25719671) UniProt PMID:25719671 NCBI chrNW_004955550:1,949,975...2,002,297
Ensembl chrNW_004955550:1,949,975...2,002,297 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955489:8,607,649...8,622,044
Ensembl chrNW_004955489:8,607,629...8,622,044 		JBrowse link
G Ik IK cytokine involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955418:39,695...52,862
Ensembl chrNW_004955418:39,695...52,862 		JBrowse link
G Isy1 ISY1 splicing factor homolog involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955429:13,513,191...13,527,516
Ensembl chrNW_004955429:13,511,914...13,527,516 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955437:321,367...325,556
Ensembl chrNW_004955437:320,768...325,810 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in
acts_upstream_of_or_within		 ISO (PMID:28781166)
(PMID:10369684), (PMID:10523320)		 UniProt
MGI		 PMID:10369684 PMID:10523320 PMID:28781166 NCBI chrNW_004955429:16,968,490...16,977,517
Ensembl chrNW_004955429:16,968,490...16,977,517 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955524:3,157,607...3,165,196
Ensembl chrNW_004955524:3,157,607...3,165,196 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955617:42,829...47,999
Ensembl chrNW_004955617:42,447...47,999 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955428:1,931,684...1,944,445
Ensembl chrNW_004955428:1,930,937...1,946,246 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955495:5,829,976...5,836,785
Ensembl chrNW_004955495:5,829,247...5,836,900 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955432:23,818,036...23,823,550
Ensembl chrNW_004955432:23,818,227...23,823,382 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:28502770) UniProt PMID:28502770 NCBI chrNW_004955413:7,195,078...7,201,659
Ensembl chrNW_004955413:7,194,798...7,201,969 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:25719671) UniProt PMID:25719671 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in
NOT|involved_in		 ISO (PMID:25719671), (PMID:26321680)
(MGI:6095345|PMID:28637692)
(MGI:5621227|PMID:25569111)		 UniProt PMID:25569111 PMID:25719671 PMID:26321680 PMID:28637692 MGI:5621227 MGI:6095345 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715 		JBrowse link
G Mfap1 microfibril associated protein 1 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955416:10,263,729...10,273,403
Ensembl chrNW_004955416:10,263,729...10,274,188 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 acts_upstream_of_or_within ISO (PMID:10719891) MGI PMID:10719891 NCBI chrNW_004955409:33,681,947...33,820,356
Ensembl chrNW_004955409:33,680,587...33,815,818 		JBrowse link
G Phf5a PHD finger protein 5A involved_in ISO (PMID:12234937), (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:12234937 PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 More... NCBI chrNW_004955413:27,018,730...27,026,937 JBrowse link
G Plrg1 pleiotropic regulator 1 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955471:8,764,465...8,777,396
Ensembl chrNW_004955471:8,763,971...8,777,396 		JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955452:17,242,255...17,256,776
Ensembl chrNW_004955452:17,242,286...17,254,860 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in ISO (PMID:28076346)
(PMID:33220177)		 UniProt PMID:28076346 PMID:33220177 NCBI chrNW_004955437:6,131,013...6,143,474
Ensembl chrNW_004955437:6,131,013...6,143,529 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:20176811) UniProt PMID:20176811 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955413:429,259...455,449
Ensembl chrNW_004955413:429,259...455,463 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within		 ISO (PMID:28781166)
(PMID:11867543)		 UniProt
MGI		 PMID:11867543 PMID:28781166 NCBI chrNW_004955604:125,489...136,209
Ensembl chrNW_004955604:124,686...136,901 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A involved_in ISO (PMID:26673105)
(PMID:28781166)		 UniProt PMID:26673105 PMID:28781166 NCBI chrNW_004955464:6,742,200...6,761,059
Ensembl chrNW_004955464:6,742,200...6,761,059 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955419:14,190,146...14,206,086
Ensembl chrNW_004955419:14,190,152...14,206,086 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO (PMID:28781166), (PMID:29301961) UniProt PMID:28781166 PMID:29301961 NCBI chrNW_004955481:1,499,634...1,530,670
Ensembl chrNW_004955481:1,499,634...1,530,670 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162 		JBrowse link
G Rbmx2 RNA binding motif protein X-linked 2 involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955473:4,654,257...4,664,419
Ensembl chrNW_004955473:4,654,748...4,664,590 		JBrowse link
G Rnf113a ring finger protein 113A involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955534:154,242...155,474
Ensembl chrNW_004955534:154,380...155,417 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in ISO (PMID:15798186) UniProt PMID:15798186 NCBI chrNW_004955448:8,947,553...9,249,465
Ensembl chrNW_004955448:8,951,336...9,326,257 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955422:19,360,641...19,370,623
Ensembl chrNW_004955422:19,360,641...19,371,105 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:15314151) UniProt PMID:15314151 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in ISO (PMID:10882114), (PMID:29360106), (PMID:32494006), (PMID:36797247) UniProt PMID:10882114 PMID:29360106 PMID:32494006 PMID:36797247 NCBI chrNW_004955455:4,579,153...4,601,942
Ensembl chrNW_004955455:4,577,329...4,602,141 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in ISO (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955495:5,896,648...5,904,287
Ensembl chrNW_004955495:5,896,648...5,904,056 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in ISO (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955452:15,691,729...15,715,782
Ensembl chrNW_004955452:15,691,497...15,716,524 		JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:11252167)
(PMID:23211737)
(PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247)		 MGI
UniProt		 PMID:11252167 PMID:23211737 PMID:27720643 PMID:28781166 PMID:29360106 More... NCBI chrNW_004955403:3,134,960...3,163,395
Ensembl chrNW_004955403:3,134,955...3,166,121 		JBrowse link
G Sf3b2 splicing factor 3b subunit 2 involved_in ISO (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955422:19,242,041...19,266,479
Ensembl chrNW_004955422:19,240,974...19,257,104 		JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in ISO (PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 More... NCBI chrNW_004955484:3,307,794...3,357,600
Ensembl chrNW_004955484:3,307,794...3,357,600 		JBrowse link
G Sf3b4 splicing factor 3b subunit 4 involved_in ISO (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:36797247) ComplexPortal PMID:27720643 PMID:29360106 PMID:32494006 PMID:36797247 NCBI chrNW_004955413:826,190...830,502
Ensembl chrNW_004955413:826,190...832,496 		JBrowse link
G Sf3b5 splicing factor 3b subunit 5 involved_in ISO (PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 More... NCBI chrNW_004955436:16,380,412...16,381,373
Ensembl chrNW_004955436:16,380,549...16,380,809 		JBrowse link
G Sf3b6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within		 ISO (PMID:27720643), (PMID:32494006), (PMID:34822310)
(PMID:23211737)		 UniProt
MGI		 PMID:23211737 PMID:27720643 PMID:32494006 PMID:34822310 NCBI chrNW_004955469:6,275,894...6,286,908
Ensembl chrNW_004955469:6,275,900...6,286,908 		JBrowse link
G Smu1 SMU1 DNA replication regulator and spliceosomal factor involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955472:2,570,248...2,600,551
Ensembl chrNW_004955472:2,570,340...2,600,146 		JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955452:15,352,080...15,365,545
Ensembl chrNW_004955452:15,353,182...15,365,459 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO (PMID:29301961), (PMID:8670905) UniProt PMID:8670905 PMID:29301961 NCBI chrNW_004955470:3,828,943...3,856,059
Ensembl chrNW_004955470:3,828,943...3,856,236 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 involved_in ISO (PMID:9531537) UniProt PMID:9531537 NCBI chrNW_004955559:1,618,246...1,634,144
Ensembl chrNW_004955559:1,614,039...1,634,142 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' involved_in ISO (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247 NCBI chrNW_004955416:28,166,885...28,178,404
Ensembl chrNW_004955416:28,166,821...28,178,404 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247 NCBI chrNW_004955415:13,522,638...13,530,725
Ensembl chrNW_004955415:13,520,530...13,531,466 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 involved_in ISO (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247 NCBI chrNW_004955415:25,880,013...25,889,295
Ensembl chrNW_004955415:25,879,983...25,890,707 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO (PMID:8972845) UniProt PMID:8972845 NCBI chrNW_004955437:2,770,251...2,830,871
Ensembl chrNW_004955437:2,813,296...2,831,036 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955402:10,283,970...10,294,869
Ensembl chrNW_004955402:10,283,970...10,296,495 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955574:157,769...164,947
Ensembl chrNW_004955574:157,769...164,947 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955455:8,021,946...8,045,325
Ensembl chrNW_004955455:8,021,946...8,046,439 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955406:39,725,841...39,732,527
Ensembl chrNW_004955406:39,725,446...39,734,586 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955405:32,236,876...32,242,716
Ensembl chrNW_004955405:32,236,876...32,242,716 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955424:14,844,318...14,851,720
Ensembl chrNW_004955424:14,844,318...14,851,720 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955413:27,160,985...27,172,648
Ensembl chrNW_004955413:27,159,816...27,172,696 		JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:15194481), (PMID:28076346) UniProt PMID:15194481 PMID:28076346 NCBI chrNW_004955438:1,561,562...1,601,492
Ensembl chrNW_004955438:1,561,568...1,601,492 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955442:14,478,350...14,498,152
Ensembl chrNW_004955442:14,482,154...14,497,639 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) UniProt PMID:9774382 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955452:4,850,049...4,856,647
Ensembl chrNW_004955452:4,848,659...4,857,114 		JBrowse link
G Tra2a transformer 2 alpha homolog involved_in ISO (PMID:9546399) UniProt PMID:9546399 NCBI chrNW_004955410:25,759,649...25,784,128
Ensembl chrNW_004955410:25,759,649...25,784,128 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in
acts_upstream_of		 ISO (PMID:9546399)
(PMID:22194695)		 UniProt
MGI		 PMID:9546399 PMID:22194695 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
G Txnl4a thioredoxin like 4A involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955402:63,153,274...63,166,208
Ensembl chrNW_004955402:63,153,052...63,166,199 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in ISO (PMID:1824937) GO_Central PMID:1824937 NCBI chrNW_004955567:683,472...699,105
Ensembl chrNW_004955567:683,078...697,996 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) UniProt PMID:11350945 NCBI chrNW_004955424:1,867,910...1,893,338
Ensembl chrNW_004955424:1,867,850...1,894,157 		JBrowse link
G Usp49 ubiquitin specific peptidase 49 involved_in ISO (PMID:23824326) UniProt PMID:23824326 NCBI chrNW_004955437:8,187,118...8,237,910
Ensembl chrNW_004955437:8,191,236...8,198,809 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955404:51,046,245...51,094,245
Ensembl chrNW_004955404:51,046,177...51,084,272 		JBrowse link
G Wdr83 WD repeat domain 83 involved_in ISO (PMID:11991638) UniProt PMID:11991638 NCBI chrNW_004955415:31,774,017...31,778,737
Ensembl chrNW_004955415:31,774,017...31,778,737 		JBrowse link
G Xab2 XPA binding protein 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955563:1,630,403...1,638,333
Ensembl chrNW_004955563:1,630,403...1,641,037 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 ISO RGD PMID:10564280 RGD:634512 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
G Zmat2 zinc finger matrin-type 2 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955418:4,335...10,844
Ensembl chrNW_004955418:1,633...10,844 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:9237760) UniProt PMID:9237760 NCBI chrNW_004955519:2,377,955...2,402,446
Ensembl chrNW_004955519:2,378,246...2,394,561 		JBrowse link
negative regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1a HNF1 homeobox A ISO RGD PMID:23674172 RGD:150540303 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:21522133) MGI PMID:21522133 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Zc3h10 zinc finger CCCH-type containing 10 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955458:3,720,451...3,725,196
Ensembl chrNW_004955458:3,720,709...3,725,196 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (PMID:21522133) MGI PMID:21522133 NCBI chrNW_004955537:82,724...134,609
Ensembl chrNW_004955537:81,920...134,609 		JBrowse link
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004955409:37,206,675...37,246,851
Ensembl chrNW_004955409:37,206,675...37,246,922 		JBrowse link
G C1qbp complement C1q binding protein involved_in ISO (PMID:10022843) UniProt PMID:10022843 NCBI chrNW_004955467:10,788,142...10,792,272
Ensembl chrNW_004955467:10,788,277...10,792,449 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A acts_upstream_of_or_within ISO (PMID:21470964) MGI PMID:21470964 NCBI chrNW_004955407:36,456,628...36,588,940
Ensembl chrNW_004955407:36,453,098...36,589,382 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:22570490 RGD:9999428 NCBI chrNW_004955468:668,177...683,540
Ensembl chrNW_004955468:670,559...683,540 		JBrowse link
G Npm1 nucleophosmin 1 acts_upstream_of_or_within ISO (PMID:16376875) MGI PMID:16376875 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Pcbp4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955532:3,604,720...3,615,112
Ensembl chrNW_004955532:3,603,975...3,614,290 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:15009664)
(PMID:23636947)
(MGI:6271441|PMID:17679093)		 UniProt
MGI
ARUK-UCL		 PMID:15009664 PMID:17679093 PMID:23636947 MGI:6271441 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492 		JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955419:15,002,780...15,101,588
Ensembl chrNW_004955419:15,000,072...15,101,588 		JBrowse link
G Rbm10 RNA binding motif protein 10 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955516:904,852...934,313
Ensembl chrNW_004955516:904,062...934,313 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO PMID:25573899
(PMID:24960161), (PMID:34732726)
(MGI:5817050|PMID:27630136), (MGI:6162809|PMID:29895960), (MGI:6472247|PMID:33110103)
PMID:23307558
PMID:35394688		 UniProt PMID:23307558 PMID:24960161 PMID:25573899 PMID:27630136 PMID:29895960 More... MGI:5817050 MGI:6162809 MGI:6472247 RGD:152025504 RGD:152025505 RGD:152025509 RGD:152025519 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm42 RNA binding motif protein 42 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955468:4,844,780...4,854,261
Ensembl chrNW_004955468:4,844,747...4,854,504 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004955442:14,995,404...15,009,358
Ensembl chrNW_004955442:14,995,404...15,009,358 		JBrowse link
G Sap18 Sin3A associated protein 18 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004955497:1,862,026...1,869,974
Ensembl chrNW_004955497:1,867,771...1,869,974 		JBrowse link
G Sfswap splicing factor SWAP involved_in ISO PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chrNW_004955482:808,684...871,377
Ensembl chrNW_004955482:808,632...871,402 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:11684676)
(MGI:3688015|PMID:11684676)		 UniProt PMID:11684676 MGI:3688015 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955452:8,143,850...8,174,830
Ensembl chrNW_004955452:8,142,500...8,174,869 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955441:6,416,709...6,423,185
Ensembl chrNW_004955441:6,416,952...6,423,074 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955455:11,175,760...11,183,597
Ensembl chrNW_004955455:11,175,760...11,183,597 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955567:683,472...699,105
Ensembl chrNW_004955567:683,078...697,996 		JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:23063121) UniProt PMID:23063121 NCBI chrNW_004955547:427,127...432,482
Ensembl chrNW_004955547:427,432...432,455 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:21247876) UniProt PMID:21247876 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:24636259 RGD:12789709 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
negative regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 ISO RGD PMID:19116344 RGD:2313309 NCBI chrNW_004955578:950,258...1,004,438
Ensembl chrNW_004955578:967,593...1,004,438 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in ISO (PMID:18335065) UniProt PMID:18335065 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 involved_in ISO (PMID:18335065) RGD
UniProt		 PMID:18335065 PMID:18534753 RGD:10045970 NCBI chrNW_004955435:1,703,588...1,773,016
Ensembl chrNW_004955435:1,702,962...1,774,334 		JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 involved_in ISO (PMID:18335065) UniProt PMID:18335065 NCBI chrNW_004955419:15,002,780...15,101,588
Ensembl chrNW_004955419:15,000,072...15,101,588 		JBrowse link
G Rps13 ribosomal protein S13 involved_in ISO (PMID:17881366) UniProt PMID:17881366 NCBI chrNW_004955414:31,887,626...31,890,439
Ensembl chrNW_004955414:31,887,626...31,890,439 		JBrowse link
G Rps26 ribosomal protein S26 involved_in ISO (PMID:15716004) UniProt PMID:15716004 NCBI chrNW_004955458:3,632,675...3,634,565
Ensembl chrNW_004955458:3,632,699...3,634,566 		JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 involved_in ISO (PMID:19328063)
(MGI:3840374|PMID:19328063)		 ParkinsonsUK-UCL PMID:19328063 MGI:3840374 NCBI chrNW_004955547:335,344...358,503
Ensembl chrNW_004955547:335,275...358,503 		JBrowse link
negative regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:26867678) UniProt PMID:26867678 NCBI chrNW_004955430:12,109,493...12,196,102
Ensembl chrNW_004955430:12,128,069...12,198,117 		JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor acts_upstream_of_or_within ISO (PMID:20663920) MGI PMID:20663920 NCBI chrNW_004955421:15,358,387...15,455,534
Ensembl chrNW_004955421:15,358,221...15,457,097 		JBrowse link
piRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 involved_in ISO (MGI:4443217|PMID:20439430) UniProt PMID:20439430 MGI:4443217 NCBI chrNW_004955446:11,967,222...12,025,537
Ensembl chrNW_004955446:11,967,322...12,024,587 		JBrowse link
G Exd1 exonuclease 3'-5' domain containing 1 involved_in ISO (MGI:5751619|PMID:26669262) UniProt PMID:26669262 MGI:5751619 NCBI chrNW_004955416:8,032,189...8,089,903 JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) involved_in ISO (MGI:5439219|PMID:22902560) UniProt PMID:22902560 MGI:5439219 NCBI chrNW_004955456:14,291,445...14,318,310
Ensembl chrNW_004955456:14,291,260...14,318,310 		JBrowse link
G Gpat2 glycerol-3-phosphate acyltransferase 2, mitochondrial involved_in ISO (MGI:5825421|PMID:23611983) UniProt PMID:23611983 MGI:5825421 NCBI chrNW_004955470:3,633,076...3,643,635
Ensembl chrNW_004955470:3,632,869...3,643,642 		JBrowse link
G Henmt1 HEN methyltransferase 1 involved_in ISO (MGI:4947214|PMID:17652135) UniProt PMID:17652135 MGI:4947214 NCBI chrNW_004955435:12,137,537...12,154,630
Ensembl chrNW_004955435:12,138,177...12,154,630 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:3813746|PMID:18694567), (MGI:4417983|PMID:20011505) UniProt PMID:18694567 PMID:20011505 MGI:3813746 MGI:4417983 NCBI chrNW_004955462:9,902,978...9,934,814
Ensembl chrNW_004955462:9,903,006...9,934,570 		JBrowse link
G Mov10l1 Mov10 like RNA helicase 1 involved_in ISO (MGI:4457263|PMID:20547853), (MGI:4457283|PMID:20534472), (MGI:5470328|PMID:23166510), (MGI:5638960|PMID:25762440) UniProt PMID:20534472 PMID:20547853 PMID:23166510 PMID:25762440 MGI:4457263 MGI:4457283 MGI:5470328 MGI:5638960 NCBI chrNW_004955413:33,142,857...33,208,897
Ensembl chrNW_004955413:33,142,918...33,208,329 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 involved_in ISO (MGI:5319753|PMID:22020280), (MGI:5501381|PMID:23706823)
(MGI:3709799|PMID:17446352), (MGI:5751619|PMID:26669262)		 UniProt PMID:17446352 PMID:22020280 PMID:23706823 PMID:26669262 MGI:3709799 MGI:5319753 MGI:5501381 MGI:5751619 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3708051|PMID:17395546), (MGI:5319753|PMID:22020280)
(MGI:5751619|PMID:26669262)		 UniProt PMID:17395546 PMID:22020280 PMID:26669262 MGI:3708051 MGI:5319753 MGI:5751619 NCBI chrNW_004955605:331,633...398,528 JBrowse link
G Pld6 phospholipase D family member 6 involved_in ISO (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chrNW_004955577:698,741...702,977 JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in ISO (PMID:34347949) UniProt PMID:34347949 NCBI chrNW_004955439:21,039,638...21,058,558
Ensembl chrNW_004955439:21,035,825...21,058,549 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) UniProt PMID:19465913 MGI:4356231 NCBI chrNW_004955431:19,173,336...19,218,183
Ensembl chrNW_004955431:19,173,234...19,218,290 		JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) UniProt PMID:24067652 MGI:5516419 NCBI chrNW_004955468:5,201,216...5,277,062
Ensembl chrNW_004955468:5,141,077...5,275,748 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISO (MGI:4418580|PMID:20059948), (MGI:5908740|PMID:28633017) UniProt PMID:20059948 PMID:28633017 MGI:4418580 MGI:5908740 NCBI chrNW_004955538:2,667,219...2,749,805
Ensembl chrNW_004955538:2,667,299...2,749,248 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in ISO (MGI:5494327|PMID:23714778) UniProt PMID:23714778 MGI:5494327 NCBI chrNW_004955589:630,989...649,936
Ensembl chrNW_004955589:631,462...649,936 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated NOT|involved_in ISO (MGI:6434559|PMID:32381626) UniProt PMID:32381626 MGI:6434559 NCBI chrNW_004955463:7,296,204...7,360,935
Ensembl chrNW_004955463:7,298,030...7,360,971 		JBrowse link
poly(A)-dependent snoRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) UniProt PMID:22442037 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:22442037) UniProt PMID:22442037 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347 		JBrowse link
positive regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ripk1 receptor interacting serine/threonine kinase 1 acts_upstream_of ISO (PMID:26020802) ARUK-UCL PMID:26020802 NCBI chrNW_004955465:10,127,907...10,167,895
Ensembl chrNW_004955465:10,128,931...10,168,399 		JBrowse link
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO c-mos polyadenylation RGD PMID:15291744 RGD:1578405 NCBI chrNW_004955446:140,661...149,500
Ensembl chrNW_004955446:140,093...149,500 		JBrowse link
G Cdc73 cell division cycle 73 involved_in ISO (PMID:19136632) UniProt PMID:19136632 NCBI chrNW_004955406:30,533,919...30,665,812
Ensembl chrNW_004955406:30,533,060...30,665,812 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:27940037) UniProt PMID:27940037 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:9342333) UniProt PMID:9342333 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:9342333) UniProt PMID:9342333 NCBI chrNW_004955420:12,979,368...12,992,500
Ensembl chrNW_004955420:12,979,368...12,992,500 		JBrowse link
positive regulation of mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955451:15,978,571...15,980,352 JBrowse link
G Exosc10 exosome component 10 acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176 		JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955404:25,556...36,730 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955534:176,553...193,033
Ensembl chrNW_004955534:176,522...193,319 		JBrowse link
positive regulation of mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase RNA specific B1 ISO RGD PMID:10331393 RGD:10450893 NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897 		JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf3 CUGBP Elav-like family member 3 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955589:700,965...715,684
Ensembl chrNW_004955589:701,767...713,179 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Dazap1 DAZ associated protein 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955495:6,499,553...6,516,227
Ensembl chrNW_004955495:6,497,890...6,524,462 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873 		JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955477:1,294,479...1,302,433
Ensembl chrNW_004955477:1,294,472...1,302,505 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955412:23,863,513...23,867,984
Ensembl chrNW_004955412:23,862,590...23,867,984 		JBrowse link
G Lmntd2 lamin tail domain containing 2 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955476:11,487,918...11,493,281
Ensembl chrNW_004955476:11,489,481...11,493,923 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) CAFA PMID:23793891 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in ISO (PMID:28221134) UniProt PMID:28221134 NCBI chrNW_004955414:19,499,577...19,607,075
Ensembl chrNW_004955414:19,499,406...19,607,075 		JBrowse link
G Obi1 ORC ubiquitin ligase 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955404:28,759,640...28,803,257
Ensembl chrNW_004955404:28,758,918...28,804,972 		JBrowse link
G Prdx6 peroxiredoxin 6 involved_in ISO (PMID:16186110) UniProt PMID:16186110 NCBI chrNW_004955406:13,717,267...13,728,216
Ensembl chrNW_004955406:13,717,267...13,728,216 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Sf3b4 splicing factor 3b subunit 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955413:826,190...830,502
Ensembl chrNW_004955413:826,190...832,496 		JBrowse link
G Slc39a5 solute carrier family 39 member 5 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955458:3,843,492...3,849,794
Ensembl chrNW_004955458:3,843,112...3,849,794 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955559:1,618,246...1,634,144
Ensembl chrNW_004955559:1,614,039...1,634,142 		JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:12840015) UniProt PMID:12840015 NCBI chrNW_004955438:1,561,562...1,601,492
Ensembl chrNW_004955438:1,561,568...1,601,492 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:20123736) UniProt PMID:20123736 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886 		JBrowse link
G Tra2a transformer 2 alpha homolog acts_upstream_of_or_within ISO (PMID:22194695) MGI PMID:22194695 NCBI chrNW_004955410:25,759,649...25,784,128
Ensembl chrNW_004955410:25,759,649...25,784,128 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in
acts_upstream_of_or_within		 ISO (PMID:15009664)
(PMID:22194695)		 UniProt
MGI		 PMID:15009664 PMID:22194695 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgcr8 DGCR8 microprocessor complex subunit involved_in ISO (PMID:15574589), (PMID:32926445) UniProt PMID:15574589 PMID:32926445 NCBI chrNW_004955442:17,998,565...18,034,247
Ensembl chrNW_004955442:17,998,565...18,030,831 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISO (PMID:32926445) UniProt PMID:32926445 NCBI chrNW_004955431:19,840,827...19,877,930
Ensembl chrNW_004955431:19,840,662...19,877,930 		JBrowse link
positive regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
positive regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO (PMID:28377597) ARUK-UCL PMID:28377597 RGD:13464257 NCBI chrNW_004955407:36,456,628...36,588,940
Ensembl chrNW_004955407:36,453,098...36,589,382 		JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:11779464), (PMID:19622636)
(MGI:6114871|PMID:25164867)		 UniProt PMID:11779464 PMID:19622636 PMID:25164867 MGI:6114871 NCBI chrNW_004955478:7,720,664...7,803,662
Ensembl chrNW_004955478:7,751,830...7,799,460 		JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in ISO (PMID:19523114) UniProt PMID:19523114 NCBI chrNW_004955422:23,449,175...23,475,919
Ensembl chrNW_004955422:23,450,251...23,475,984 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:22684629 RGD:10002775 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774 		JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L like involved_in ISO (PMID:18669861) UniProt PMID:18669861 NCBI chrNW_004955441:6,229,692...6,269,051
Ensembl chrNW_004955441:6,229,692...6,257,214 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 ISO RGD PMID:11118435 RGD:632715 NCBI chrNW_004955461:9,751,057...9,926,211
Ensembl chrNW_004955461:9,751,057...9,915,943 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in ISO (PMID:20348923) UniProt PMID:20348923 NCBI chrNW_004955446:1,020,707...1,098,327
Ensembl chrNW_004955446:1,020,043...1,098,820 		JBrowse link
G Polr2a RNA polymerase II subunit A involved_in ISO (PMID:21536736) UniProt PMID:21536736 NCBI chrNW_004955467:9,423,540...9,447,530
Ensembl chrNW_004955467:9,421,256...9,447,530 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO (PMID:22466703)
(MGI:5442495|PMID:22466703)		 UniProt PMID:22466703 MGI:5442495 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO (PMID:22246180) UniProt PMID:22246180 NCBI chrNW_004955415:3,895,272...3,905,801 JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) UniProt PMID:19515850 NCBI chrNW_004955513:1,718,432...1,776,133
Ensembl chrNW_004955513:1,718,377...1,777,021 		JBrowse link
G Slc38a2 solute carrier family 38 member 2 involved_in ISO (PMID:22215663) ARUK-UCL PMID:22215663 NCBI chrNW_004955500:5,517,323...5,530,055
Ensembl chrNW_004955500:5,516,039...5,531,758 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:16308321 RGD:11038784 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:9199345 RGD:11039429 NCBI chrNW_004955466:612,221...617,087
Ensembl chrNW_004955466:612,221...617,753 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in ISO (PMID:21536736) UniProt PMID:21536736 NCBI chrNW_004955567:683,472...699,105
Ensembl chrNW_004955567:683,078...697,996 		JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO (PMID:11283611) UniProt PMID:11283611 NCBI chrNW_004955412:18,117,957...18,127,552
Ensembl chrNW_004955412:18,116,531...18,127,552 		JBrowse link
positive regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chrNW_004955456:14,047,409...14,057,483
Ensembl chrNW_004955456:14,047,409...14,057,939 		JBrowse link
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chrNW_004955446:6,235,004...6,244,422
Ensembl chrNW_004955446:6,234,846...6,244,422 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chrNW_004955492:3,627,889...3,672,269
Ensembl chrNW_004955492:3,627,889...3,672,269 		JBrowse link
G Riok1 RIO kinase 1 involved_in ISO (PMID:22072790) UniProt PMID:22072790 NCBI chrNW_004955465:6,487,078...6,506,108
Ensembl chrNW_004955465:6,487,078...6,506,108 		JBrowse link
G Riok2 RIO kinase 2 involved_in ISO (PMID:19564402) UniProt PMID:19564402 NCBI chrNW_004955418:15,487,248...15,509,490
Ensembl chrNW_004955418:15,487,248...15,513,831 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (PMID:26867678) UniProt PMID:26867678 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chrNW_004955422:20,767,599...20,768,505
Ensembl chrNW_004955422:20,767,599...20,768,505 		JBrowse link
G Utp15 UTP15 small subunit processome component involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chrNW_004955425:27,018,938...27,035,715
Ensembl chrNW_004955425:27,017,817...27,035,431 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chrNW_004955469:10,777,332...10,835,577
Ensembl chrNW_004955469:10,777,292...10,835,577 		JBrowse link
G Wdr75 WD repeat domain 75 involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chrNW_004955403:9,352,615...9,383,206
Ensembl chrNW_004955403:9,352,615...9,383,206 		JBrowse link
pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific acts_upstream_of_or_within ISO (PMID:23622242) MGI PMID:23622242 NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938 		JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) BHF-UCL PMID:19966796 NCBI chrNW_004955452:13,935,028...13,967,281
Ensembl chrNW_004955452:13,934,346...13,968,624 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5616320|PMID:16357216)
(PMID:16424907), (PMID:17671087), (PMID:18178619), (PMID:19966796), (PMID:23661684)		 BHF-UCL
ComplexPortal		 PMID:16357216 PMID:16424907 PMID:17671087 PMID:18178619 PMID:19966796 More... MGI:5616320 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) BHF-UCL PMID:19966796 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259 		JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) BHF-UCL PMID:19966796 NCBI chrNW_004955452:13,882,416...13,922,590
Ensembl chrNW_004955452:13,882,416...13,922,590 		JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:33664453) ARUK-UCL PMID:33664453 NCBI chrNW_004955547:427,127...432,482
Ensembl chrNW_004955547:427,432...432,455 		JBrowse link
G Dicer1 dicer 1, ribonuclease III involved_in
acts_upstream_of_or_within		 ISO (PMID:15973356), (PMID:16357216), (PMID:18178619), (PMID:23661684), (PMID:25549615)
(PMID:18604195)		 BHF-UCL
MGI		 PMID:15973356 PMID:16357216 PMID:18178619 PMID:18604195 PMID:23661684 More... NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Drosha drosha ribonuclease III acts_upstream_of_or_within ISO (PMID:18604195) MGI PMID:18604195 NCBI chrNW_004955426:17,387,595...17,505,126
Ensembl chrNW_004955426:17,387,534...17,502,294 		JBrowse link
G Lin28a lin-28 homolog A involved_in
acts_upstream_of_or_within		 ISO (MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307)
(PMID:18604195)
(PMID:19703396)		 UniProt
MGI		 PMID:18292307 PMID:18604195 PMID:19703396 MGI:4359358 MGI:4359360 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:16424907), (PMID:23661684) BHF-UCL PMID:16424907 PMID:23661684 NCBI chrNW_004955403:18,394,609...18,410,381
Ensembl chrNW_004955403:18,373,375...18,410,627 		JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356), (PMID:16357216), (PMID:16424907), (PMID:18178619), (PMID:23661684) BHF-UCL PMID:15973356 PMID:16357216 PMID:16424907 PMID:18178619 PMID:23661684 NCBI chrNW_004955458:793,753...798,755
Ensembl chrNW_004955458:793,759...798,806 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:25979828)
(PMID:19703396)		 UniProt PMID:19703396 PMID:25979828 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:25979828) UniProt PMID:25979828 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436 		JBrowse link
primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx3x DEAD-box helicase 3 X-linked acts_upstream_of_or_within_negative_effect ISO (PMID:28819115) MGI PMID:28819115 NCBI chrNW_004955565:1,387,043...1,403,624
Ensembl chrNW_004955565:1,386,973...1,404,220 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit acts_upstream_of_or_within
involved_in		 ISO (PMID:15531877), (PMID:15574589)
(PMID:15574589), (PMID:24449907), (PMID:24910438)		 MGI
BHF-UCL		 PMID:15531877 PMID:15574589 PMID:24449907 PMID:24910438 NCBI chrNW_004955442:17,998,565...18,034,247
Ensembl chrNW_004955442:17,998,565...18,030,831 		JBrowse link
G Drosha drosha ribonuclease III involved_in ISO (PMID:14508493), (PMID:15574589) WB PMID:14508493 PMID:15574589 NCBI chrNW_004955426:17,387,595...17,505,126
Ensembl chrNW_004955426:17,387,534...17,502,294 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:26321680) UniProt PMID:26321680 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:25799998) UniProt PMID:25799998 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715 		JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO (PMID:31819270) UniProt PMID:31819270 NCBI chrNW_004955424:22,830,889...22,899,420
Ensembl chrNW_004955424:22,832,882...22,899,420 		JBrowse link
G Srrt serrate, RNA effector molecule involved_in ISO (PMID:19632182)
(MGI:4359572|PMID:19632182)		 UniProt PMID:19632182 MGI:4359572 NCBI chrNW_004955573:86,975...101,538
Ensembl chrNW_004955573:87,084...101,033 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:33664453) ARUK-UCL PMID:33664453 NCBI chrNW_004955437:6,306,151...6,314,332
Ensembl chrNW_004955437:6,306,151...6,314,332 		JBrowse link
primary piRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Piwil1 piwi like RNA-mediated gene silencing 1 involved_in ISO (MGI:5316869|PMID:22121019) UniProt PMID:22121019 MGI:5316869 NCBI chrNW_004955482:1,435,925...1,451,067
Ensembl chrNW_004955482:1,435,925...1,450,857 		JBrowse link
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arb2a ARB2 cotranscriptional regulator A involved_in ISO (MGI:6113784|PMID:29311329) UniProt PMID:29311329 MGI:6113784 NCBI chrNW_004955418:18,213,824...18,624,082
Ensembl chrNW_004955418:18,245,947...18,589,185 		JBrowse link
G Celf1 CUGBP Elav-like family member 1 acts_upstream_of_or_within ISO (PMID:32109384) MGI PMID:32109384 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647 		JBrowse link
G Celf3 CUGBP Elav-like family member 3 involved_in ISO (PMID:11158314) UniProt PMID:11158314 NCBI chrNW_004955589:700,965...715,684
Ensembl chrNW_004955589:701,767...713,179 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314)
(PMID:19720736)		 UniProt
MGI		 PMID:11158314 PMID:19720736 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Celf5 CUGBP Elav-like family member 5 involved_in ISO (PMID:11158314) UniProt PMID:11158314 NCBI chrNW_004955495:5,182,758...5,214,724
Ensembl chrNW_004955495:5,185,126...5,214,718 		JBrowse link
G Celf6 CUGBP Elav-like family member 6 involved_in ISO (PMID:14761971) UniProt PMID:14761971 NCBI chrNW_004955450:4,822,125...4,853,572
Ensembl chrNW_004955450:4,822,125...4,855,238 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO (PMID:23022728)
(MGI:5819339|PMID:23022728)		 UniProt PMID:23022728 MGI:5819339 NCBI chrNW_004955413:24,646,317...24,664,614
Ensembl chrNW_004955413:24,646,320...24,664,614 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:21343338)
(MGI:5819339|PMID:23022728)
(PMID:23022728)		 UniProt PMID:21343338 PMID:23022728 MGI:5819339 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO PMID:22767602 UniProt PMID:22767602 RGD:8554210 NCBI chrNW_004955407:36,456,628...36,588,940
Ensembl chrNW_004955407:36,453,098...36,589,382 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:18653529)
(MGI:5009520|PMID:18653529)		 UniProt PMID:18653529 MGI:5009520 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:25689357) CAFA PMID:25689357 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in ISO (PMID:25623890)
(MGI:5441689|PMID:22523384)		 UniProt PMID:22523384 PMID:25623890 MGI:5441689 NCBI chrNW_004955468:668,177...683,540
Ensembl chrNW_004955468:670,559...683,540 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:22325991) UniProt PMID:22325991 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (PMID:24514149)
PMID:15345239		 UniProt PMID:15345239 PMID:24514149 RGD:1358238 NCBI chrNW_004955452:10,413,883...10,458,518
Ensembl chrNW_004955452:10,413,883...10,440,678 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 involved_in ISO PMID:15345239 UniProt PMID:15345239 RGD:1358238 NCBI chrNW_004955461:9,751,057...9,926,211
Ensembl chrNW_004955461:9,751,057...9,915,943 		JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chrNW_004955464:5,919,289...5,929,152 JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Mbnl2 muscleblind like splicing regulator 2 involved_in
acts_upstream_of_or_within		 ISO PMID:31283468
(PMID:19720736)		 UniProt
MGI		 PMID:19720736 PMID:31283468 RGD:243049249 NCBI chrNW_004955404:12,979,671...13,132,239
Ensembl chrNW_004955404:12,979,235...13,132,361 		JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within ISO (PMID:9525963) MGI PMID:9525963 NCBI chrNW_004955414:32,523,959...32,526,575
Ensembl chrNW_004955414:32,523,924...32,526,674 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in ISO (MGI:5789071|PMID:27223325), (MGI:6718240|PMID:14615540)
(MGI:6716952|PMID:17065982)		 UniProt PMID:14615540 PMID:17065982 PMID:27223325 MGI:5789071 MGI:6716952 MGI:6718240 NCBI chrNW_004955409:33,681,947...33,820,356
Ensembl chrNW_004955409:33,680,587...33,815,818 		JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in ISO (PMID:32197073)
(MGI:3587155|PMID:16041372), (MGI:5789071|PMID:27223325), (MGI:6716952|PMID:17065982), (MGI:6718240|PMID:14615540)		 UniProt PMID:14615540 PMID:16041372 PMID:17065982 PMID:27223325 PMID:32197073 MGI:3587155 MGI:5789071 MGI:6716952 MGI:6718240 NCBI chrNW_004955574:360,822...361,459 JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 involved_in ISO (PMID:21296756) UniProt PMID:21296756 NCBI chrNW_004955481:3,142,009...3,192,060
Ensembl chrNW_004955481:3,138,059...3,192,066 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in ISO (PMID:16260624), (PMID:21518792) UniProt PMID:16260624 PMID:21518792 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492 		JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 acts_upstream_of_or_within ISO (PMID:23300487) MGI PMID:23300487 NCBI chrNW_004955442:10,345,261...10,694,602
Ensembl chrNW_004955442:10,344,365...10,908,434 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:3770484|PMID:17715393), (MGI:5284784|PMID:17101796)
(PMID:22357600)
PMID:37548402
Cacna1c
Atp2b1, Mef2a
Fxr1, Mef2a, Mtmr3
Mcl1		 BHF-UCL
MGI
UniProt
RGD		 PMID:17101796 PMID:17715393 PMID:22357600 PMID:27239029 PMID:28993448 More... MGI:3770484 MGI:5284784 RGD:329845872 RGD:329845873 RGD:329845874 RGD:329848961 RGD:401901235 NCBI chrNW_004955413:22,034,048...22,288,430
Ensembl chrNW_004955413:22,035,837...22,287,763 		JBrowse link
G Rbm11 RNA binding motif protein 11 acts_upstream_of_or_within ISO (PMID:21984414) MGI PMID:21984414 NCBI chrNW_004955407:16,071,186...16,082,332
Ensembl chrNW_004955407:16,071,208...16,081,949 		JBrowse link
G Rbm15 RNA binding motif protein 15 involved_in ISO (PMID:26575292)
(MGI:6158801|PMID:25468569)		 UniProt PMID:25468569 PMID:26575292 MGI:6158801 NCBI chrNW_004955435:13,846,297...13,854,639
Ensembl chrNW_004955435:13,846,297...13,854,639 		JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (PMID:16129689) UniProt PMID:16129689 NCBI chrNW_004955532:3,080,207...3,082,312 JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO PMID:27289039
PMID:33805770		 UniProt PMID:27289039 PMID:33805770 RGD:152995553 RGD:152995577 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:26844700), (PMID:26990106), (PMID:29104163)
PMID:27289039
(MGI:6148527|PMID:25313962)		 UniProt PMID:25313962 PMID:26844700 PMID:26990106 PMID:27289039 PMID:29104163 MGI:6148527 RGD:152995577 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778 		JBrowse link
G Rbm25 RNA binding motif protein 25 involved_in ISO (PMID:18663000) UniProt PMID:18663000 NCBI chrNW_004955523:2,213,766...2,270,417
Ensembl chrNW_004955523:2,213,766...2,270,597 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in ISO (PMID:31358901) UniProt PMID:31358901 NCBI chrNW_004955443:6,940,523...7,100,130
Ensembl chrNW_004955443:6,940,523...7,100,130 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISO (PMID:18840686), (PMID:18951082) UniProt PMID:18840686 PMID:18951082 NCBI chrNW_004955532:1,929,540...1,957,297
Ensembl chrNW_004955532:1,929,043...1,956,812 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162 		JBrowse link
G Rbmx RNA binding motif protein X-linked involved_in ISO (PMID:12165565), (PMID:12761049) UniProt PMID:12165565 PMID:12761049 NCBI chrNW_004955489:8,280,842...8,286,252
Ensembl chrNW_004955489:8,280,794...8,286,252 		JBrowse link
G Rbpms RNA binding protein, mRNA processing factor involved_in ISO PMID:37548402 UniProt PMID:37548402 RGD:401901235 NCBI chrNW_004955463:6,817,570...6,973,393
Ensembl chrNW_004955463:6,901,263...6,988,870 		JBrowse link
G Rbpms2 RNA binding protein, mRNA processing factor 2 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chrNW_004955450:10,746,708...10,770,540
Ensembl chrNW_004955450:10,763,540...10,770,610 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chrNW_004955442:14,995,404...15,009,358
Ensembl chrNW_004955442:14,995,404...15,009,358 		JBrowse link
G Sap18 Sin3A associated protein 18 involved_in ISO (PMID:22203037)
(PMID:20966198)		 UniProt PMID:20966198 PMID:22203037 NCBI chrNW_004955497:1,862,026...1,869,974
Ensembl chrNW_004955497:1,867,771...1,869,974 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:29961578)
(PMID:23055939)
(MGI:6201863|PMID:25727884)		 UniProt
MGI		 PMID:23055939 PMID:25727884 PMID:29961578 MGI:6201863 NCBI chrNW_004955455:12,318,529...12,473,420
Ensembl chrNW_004955455:12,318,529...12,473,647 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) UniProt PMID:11684676 NCBI chrNW_004955411:15,851,482...15,918,864 JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 acts_upstream_of_or_within ISO (PMID:21470964) MGI PMID:21470964 NCBI chrNW_004955506:5,569,280...5,572,164
Ensembl chrNW_004955506:5,569,302...5,570,120 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in
acts_upstream_of_or_within		 ISO (PMID:24440982)
(PMID:23132731)		 UniProt
MGI		 PMID:23132731 PMID:24440982 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:20932480) UniProt PMID:20932480 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886 		JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in ISO (PMID:14966131), (PMID:17580305)
(MGI:6827199|PMID:11514562), (MGI:6827311|PMID:10938105)		 UniProt PMID:10938105 PMID:11514562 PMID:14966131 PMID:17580305 MGI:6827199 MGI:6827311 NCBI chrNW_004955424:14,887,722...14,920,844
Ensembl chrNW_004955424:14,887,659...14,921,588 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in ISO (PMID:25689357)
(PMID:12165565), (PMID:12761049)		 CAFA
UniProt		 PMID:12165565 PMID:12761049 PMID:25689357 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
G Wtap WT1 associated protein involved_in ISO (PMID:24407421) UniProt PMID:24407421 NCBI chrNW_004955439:21,149,970...21,174,479
Ensembl chrNW_004955439:21,146,206...21,182,486 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 acts_upstream_of_or_within ISO (PMID:29799838) MGI PMID:29799838 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7A involved_in ISO (PMID:24514149) UniProt PMID:24514149 NCBI chrNW_004955495:4,747,905...4,754,066
Ensembl chrNW_004955495:4,740,901...4,753,992 		JBrowse link
regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex acts_upstream_of_or_within ISO (PMID:27159388) MGI PMID:27159388 NCBI chrNW_004955458:793,753...798,755
Ensembl chrNW_004955458:793,759...798,806 		JBrowse link
regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcyl1 adenosylhomocysteinase like 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:19224921) UniProt
MGI		 PMID:19224921 NCBI chrNW_004955435:13,487,441...13,525,924
Ensembl chrNW_004955435:13,487,398...13,526,189 		JBrowse link
G Cdk9 cyclin dependent kinase 9 involved_in ISO (PMID:19575011)
(MGI:5616315|PMID:19575011)		 UniProt PMID:19575011 MGI:5616315 NCBI chrNW_004955419:874,959...883,160
Ensembl chrNW_004955419:873,289...883,160 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO (PMID:28383716) UniProt PMID:28383716 NCBI chrNW_004955416:13,963,300...14,038,691
Ensembl chrNW_004955416:13,981,657...14,039,705 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (PMID:21832157) UniProt PMID:21832157 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617 		JBrowse link
regulation of mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase acts_upstream_of_or_within ISO (PMID:23177736) UniProt PMID:23177736 NCBI chrNW_004955478:11,104,445...11,128,980
Ensembl chrNW_004955478:11,105,920...11,128,222 		JBrowse link
G Cdk11b cyclin dependent kinase 11B involved_in ISO (PMID:12501247) UniProt PMID:12501247 NCBI chrNW_004955486:9,251,242...9,270,218 JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28355180) UniProt PMID:28355180 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011 		JBrowse link
G Hdac7 histone deacetylase 7 involved_in ISO (PMID:37369679) UniProt PMID:37369679 NCBI chrNW_004955500:6,692,656...6,707,453
Ensembl chrNW_004955500:6,693,668...6,709,864 		JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISO (PMID:17234882) UniProt PMID:17234882 NCBI chrNW_004955459:3,021,320...3,063,363
Ensembl chrNW_004955459:3,021,764...3,063,128 		JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO (PMID:23115303) ComplexPortal PMID:23115303 NCBI chrNW_004955464:5,919,289...5,929,152 JBrowse link
G Nova1 NOVA alternative splicing regulator 1 ISO RGD PMID:12124753 RGD:708602 NCBI chrNW_004955409:33,681,947...33,820,356
Ensembl chrNW_004955409:33,680,587...33,815,818 		JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 acts_upstream_of_or_within ISO (PMID:18729827) MGI PMID:18729827 NCBI chrNW_004955575:1,126,978...1,156,727
Ensembl chrNW_004955575:1,126,639...1,158,181 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:23115303) ComplexPortal PMID:23115303 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162 		JBrowse link
G Safb scaffold attachment factor B ISO RGD PMID:9671816 RGD:634000 NCBI chrNW_004955495:3,743,673...3,775,073
Ensembl chrNW_004955495:3,743,858...3,774,913 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO (PMID:8208298)
(MGI:1195449|PMID:9446799)		 UniProt PMID:8208298 PMID:9446799 MGI:1195449 NCBI chrNW_004955437:3,664,290...3,729,832 JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (MGI:5508611|PMID:17234882) UniProt PMID:17234882 MGI:5508611 NCBI chrNW_004955481:4,462,270...4,497,364
Ensembl chrNW_004955481:4,462,270...4,497,364 		JBrowse link
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in ISO (PMID:19574390)
(MGI:4940413|PMID:21300889)		 UniProt PMID:19574390 PMID:21300889 MGI:4940413 NCBI chrNW_004955506:5,577,735...5,588,307
Ensembl chrNW_004955506:5,577,437...5,588,372 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chrNW_004955452:10,413,883...10,458,518
Ensembl chrNW_004955452:10,413,883...10,440,678 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chrNW_004955502:1,486,799...1,944,298
Ensembl chrNW_004955502:1,509,237...1,943,297 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chrNW_004955461:9,751,057...9,926,211
Ensembl chrNW_004955461:9,751,057...9,915,943 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO (PMID:32017898)
(MGI:6400674|PMID:32017896)		 UniProt PMID:32017896 PMID:32017898 MGI:6400674 NCBI chrNW_004955457:14,178,674...14,200,164
Ensembl chrNW_004955457:14,178,947...14,192,193 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in
NOT|involved_in		 ISO (PMID:28525753)
(MGI:6114846|PMID:29262316)		 UniProt PMID:28525753 PMID:29262316 MGI:6114846 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in ISO (PMID:27029405), (PMID:31331967), (PMID:34428287)
(MGI:6504661|PMID:33397958), (MGI:6514532|PMID:33378678), (MGI:7485690|PMID:36627242)
(MGI:6108922|PMID:29021242)		 UniProt PMID:27029405 PMID:29021242 PMID:31331967 PMID:33378678 PMID:33397958 More... MGI:6108922 MGI:6504661 MGI:6514532 MGI:7485690 NCBI chrNW_004955439:17,925,205...18,079,727
Ensembl chrNW_004955439:17,925,229...18,079,727 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO (PMID:26604136), (PMID:27496873), (PMID:32840935)
(PMID:33188278)
(PMID:30948719)		 UniProt PMID:26604136 PMID:27496873 PMID:30948719 PMID:32840935 PMID:33188278 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm23 RNA binding motif protein 23 involved_in ISO (PMID:15694343) UniProt PMID:15694343 NCBI chrNW_004955409:37,384,872...37,392,896 JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in ISO (PMID:15694343)
(PMID:28302793), (PMID:28437394)		 UniProt PMID:15694343 PMID:28302793 PMID:28437394 NCBI chrNW_004955422:25,719,771...25,755,757
Ensembl chrNW_004955422:25,719,771...25,755,757 		JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:21504830) UniProt PMID:21504830 NCBI chrNW_004955407:32,974,656...33,007,073
Ensembl chrNW_004955407:32,974,725...33,006,297 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:26876937) UniProt PMID:26876937 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:26876937), (PMID:32440474) UniProt PMID:26876937 PMID:32440474 NCBI chrNW_004955437:6,306,151...6,314,332
Ensembl chrNW_004955437:6,306,151...6,314,332 		JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in ISO (PMID:11106748), (PMID:7488725) UniProt PMID:7488725 PMID:11106748 NCBI chrNW_004955424:14,887,722...14,920,844
Ensembl chrNW_004955424:14,887,659...14,921,588 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISO (PMID:26876937), (PMID:28984244) UniProt PMID:26876937 PMID:28984244 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff2 ALF transcription elongation factor 2 involved_in ISO (PMID:19136466)
(MGI:4430801|PMID:19136466)		 UniProt PMID:19136466 MGI:4430801 NCBI chrNW_004955498:1,012,323...1,497,031
Ensembl chrNW_004955498:1,012,555...1,492,616 		JBrowse link
G Ahnak AHNAK nucleoprotein involved_in ISO (MGI:5545966|PMID:21940993) UniProt PMID:21940993 MGI:5545966 NCBI chrNW_004955599:629,271...656,564 JBrowse link
G Akap17a A-kinase anchoring protein 17A involved_in ISO (PMID:19840947) UniProt PMID:19840947 NCBI chrNW_004955499:1,119,658...1,130,250 JBrowse link
G Brdt bromodomain testis associated involved_in ISO (MGI:5448498|PMID:22570411) UniProt PMID:22570411 MGI:5448498 NCBI chrNW_004955423:2,434,146...2,498,523
Ensembl chrNW_004955423:2,431,192...2,494,906 		JBrowse link
G Ccnl1 cyclin L1 involved_in ISO (PMID:12501247) ComplexPortal PMID:12501247 NCBI chrNW_004955448:8,112,774...8,125,912
Ensembl chrNW_004955448:8,113,216...8,124,628 		JBrowse link
G Ccnl2 cyclin L2 involved_in ISO (PMID:18216018) ComplexPortal PMID:18216018 NCBI chrNW_004955486:9,423,491...9,432,811
Ensembl chrNW_004955486:9,423,491...9,432,811 		JBrowse link
G Cdk12 cyclin dependent kinase 12 ISO RGD PMID:16537916 RGD:8553775 NCBI chrNW_004955451:14,244,392...14,345,885
Ensembl chrNW_004955451:14,244,978...14,309,689 		JBrowse link
G Celf1 CUGBP Elav-like family member 1 involved_in ISO (PMID:16946708) UniProt PMID:16946708 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647 		JBrowse link
G Clk1 CDC like kinase 1 involved_in ISO (PMID:19168442) UniProt PMID:19168442 NCBI chrNW_004955403:655,808...665,007
Ensembl chrNW_004955403:656,767...666,463 		JBrowse link
G Clk2 CDC like kinase 2 involved_in ISO (PMID:9637771) UniProt PMID:9637771 NCBI chrNW_004955545:1,716,294...1,727,187
Ensembl chrNW_004955545:1,716,294...1,725,185 		JBrowse link
G Clk3 CDC like kinase 3 involved_in ISO (PMID:9637771) UniProt PMID:9637771 NCBI chrNW_004955450:3,250,169...3,262,977
Ensembl chrNW_004955450:3,250,444...3,262,920 		JBrowse link
G Clk4 CDC like kinase 4 involved_in ISO (PMID:19168442) UniProt PMID:19168442 NCBI chrNW_004955408:1,726,283...1,747,314
Ensembl chrNW_004955408:1,719,963...1,747,878 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 involved_in ISO (PMID:19285943)
(MGI:5915403|PMID:29107558)		 UniProt PMID:19285943 PMID:29107558 MGI:5915403 NCBI chrNW_004955417:10,813,831...10,881,238
Ensembl chrNW_004955417:10,813,593...10,882,921 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 involved_in ISO (PMID:19285943) UniProt PMID:19285943 NCBI chrNW_004955484:8,426,453...8,433,902
Ensembl chrNW_004955484:8,426,453...8,433,893 		JBrowse link
G Fam50a family with sequence similarity 50 member A involved_in ISO (PMID:32703943) UniProt PMID:32703943 NCBI chrNW_004955580:941,620...947,763 JBrowse link
G Fastk Fas activated serine/threonine kinase involved_in ISO (PMID:17592127)
(PMID:17135269)		 UniProt PMID:17135269 PMID:17592127 NCBI chrNW_004955491:5,513,482...5,516,681
Ensembl chrNW_004955491:5,513,580...5,516,679 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:28985503) UniProt PMID:28985503 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F involved_in ISO (PMID:20526337)
(PMID:9111328)		 UniProt PMID:9111328 PMID:20526337 NCBI chrNW_004955546:1,386,186...1,401,071
Ensembl chrNW_004955546:1,386,186...1,401,071 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 involved_in ISO (PMID:16946708) UniProt PMID:16946708 NCBI chrNW_004955408:937,706...944,969
Ensembl chrNW_004955408:936,595...948,064 		JBrowse link
G Ildr1 immunoglobulin like domain containing receptor 1 involved_in ISO (MGI:6810798|PMID:28785060) UniProt PMID:28785060 MGI:6810798 NCBI chrNW_004955427:21,304,460...21,333,170
Ensembl chrNW_004955427:21,304,890...21,322,261 		JBrowse link
G Ildr2 immunoglobulin like domain containing receptor 2 involved_in ISO (MGI:6810798|PMID:28785060) UniProt PMID:28785060 MGI:6810798 NCBI chrNW_004955462:9,953,393...10,016,339
Ensembl chrNW_004955462:9,953,452...10,012,518 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO (PMID:15257297), (PMID:16946708) UniProt PMID:15257297 PMID:16946708 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Mbnl2 muscleblind like splicing regulator 2 involved_in ISO (PMID:15257297), (PMID:16946708) UniProt PMID:15257297 PMID:16946708 NCBI chrNW_004955404:12,979,671...13,132,239
Ensembl chrNW_004955404:12,979,235...13,132,361 		JBrowse link
G Mbnl3 muscleblind like splicing regulator 3 involved_in ISO (PMID:15257297) UniProt PMID:15257297 NCBI chrNW_004955473:2,449,543...2,555,445
Ensembl chrNW_004955473:2,490,011...2,547,495 		JBrowse link
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO (PMID:31913360) UniProt PMID:31913360 NCBI chrNW_004955402:7,733,220...7,762,756
Ensembl chrNW_004955402:7,732,627...7,763,038 		JBrowse link
G Myod1 myogenic differentiation 1 involved_in ISO (PMID:10672515) BHF-UCL PMID:10672515 NCBI chrNW_004955414:32,523,959...32,526,575
Ensembl chrNW_004955414:32,523,924...32,526,674 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 acts_upstream_of_or_within ISO (PMID:23512658) MGI PMID:23512658 NCBI chrNW_004955543:430,324...434,205
Ensembl chrNW_004955543:430,853...434,205 		JBrowse link
G Prx periaxin involved_in ISO (MGI:5545966|PMID:21940993) UniProt PMID:21940993 MGI:5545966 NCBI chrNW_004955578:852,789...873,319
Ensembl chrNW_004955578:868,534...874,168 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO PMID:22466703 UniProt PMID:22466703 RGD:7241566 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:19285943) UniProt PMID:19285943 NCBI chrNW_004955445:2,036,314...2,050,882
Ensembl chrNW_004955445:2,036,124...2,052,139 		JBrowse link
G Rrp1b ribosomal RNA processing 1B involved_in ISO (MGI:5919306|PMID:23604122) UniProt PMID:23604122 MGI:5919306 NCBI chrNW_004955407:38,553,866...38,577,547
Ensembl chrNW_004955407:38,553,814...38,577,465 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 involved_in ISO (PMID:2467746) UniProt PMID:2467746 NCBI chrNW_004955559:1,618,246...1,634,144
Ensembl chrNW_004955559:1,614,039...1,634,142 		JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:27545680) UniProt PMID:27545680 NCBI chrNW_004955407:32,974,656...33,007,073
Ensembl chrNW_004955407:32,974,725...33,006,297 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in ISO (MGI:4414616|PMID:19737518) UniProt PMID:19737518 MGI:4414616 NCBI chrNW_004955455:12,318,529...12,473,420
Ensembl chrNW_004955455:12,318,529...12,473,647 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (MGI:6810798|PMID:28785060) UniProt PMID:28785060 MGI:6810798 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in ISO (PMID:10749975)
(MGI:6810798|PMID:28785060)		 UniProt PMID:10749975 PMID:28785060 MGI:6810798 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
G Znf326 zinc finger protein 326 involved_in ISO (PMID:22446626) UniProt PMID:22446626 NCBI chrNW_004955423:4,145,169...4,178,409
Ensembl chrNW_004955423:4,145,998...4,178,320 		JBrowse link
regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl18 methyltransferase 18, RPL3 N3(tau)-histidine involved_in ISO (PMID:33693809) UniProt PMID:33693809 NCBI chrNW_004955462:7,519,591...7,521,021
Ensembl chrNW_004955462:7,519,857...7,520,978 		JBrowse link
G Ncl nucleolin ISO RGD PMID:2049089 RGD:9588272 NCBI chrNW_004955453:4,154,627...4,164,253
Ensembl chrNW_004955453:4,154,627...4,164,253 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:19208757)
(MGI:6117526|PMID:29273634)		 UniProt PMID:19208757 PMID:29273634 MGI:6117526 NCBI chrNW_004955506:3,824,598...3,861,919
Ensembl chrNW_004955506:3,824,556...3,862,098 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:31815440) UniProt PMID:31815440 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
regulation of translational initiation by tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27745969) UniProt PMID:27745969 NCBI chrNW_004955438:1,531,114...1,556,483
Ensembl chrNW_004955438:1,531,114...1,556,481 		JBrowse link
regulation of tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:15861136) UniProt PMID:15861136 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904 		JBrowse link
RNA 3' uridylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28a lin-28 homolog A involved_in ISO (MGI:6377821|PMID:18951094) CACAO PMID:18951094 MGI:6377821 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662 		JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955504:4,443,051...4,476,373
Ensembl chrNW_004955504:4,443,051...4,476,520 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939)
(MGI:6162440|PMID:28671666)		 UniProt PMID:28671666 PMID:28792939 MGI:6162305 MGI:6162440 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:28671666)
(MGI:6162305|PMID:28792939)		 UniProt PMID:28671666 PMID:28792939 MGI:6162305 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436 		JBrowse link
RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28a lin-28 homolog A involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396)
(MGI:4365679|PMID:19701194)		 UniProt PMID:19701194 PMID:19703396 MGI:4365679 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:17353264) UniProt PMID:17353264 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436 		JBrowse link
RNA polyadenylation at postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO PMID:22727665 SynGO PMID:22727665 RGD:155230789 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068 		JBrowse link
RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arvcf ARVCF delta catenin family member involved_in ISO (PMID:24644279) UniProt PMID:24644279 NCBI chrNW_004955442:18,109,421...18,149,969
Ensembl chrNW_004955442:18,109,439...18,127,971 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:22446626) UniProt PMID:22446626 NCBI chrNW_004955403:46,027,997...46,042,154
Ensembl chrNW_004955403:46,027,998...46,042,154 		JBrowse link
G Cdk12 cyclin dependent kinase 12 involved_in ISO PMID:16537916 UniProt PMID:16537916 RGD:8553775 NCBI chrNW_004955451:14,244,392...14,345,885
Ensembl chrNW_004955451:14,244,978...14,309,689 		JBrowse link
G Celf3 CUGBP Elav-like family member 3 involved_in ISO (PMID:17725984) UniProt PMID:17725984 NCBI chrNW_004955589:700,965...715,684
Ensembl chrNW_004955589:701,767...713,179 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:18593880) BHF-UCL PMID:18593880 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384 		JBrowse link
G Ddx47 DEAD-box helicase 47 involved_in ISO (PMID:16963496) UniProt PMID:16963496 NCBI chrNW_004955413:9,703,777...9,718,802
Ensembl chrNW_004955413:9,703,777...9,718,796 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Ivns1abp influenza virus NS1A binding protein involved_in ISO (PMID:23825951) UniProt PMID:23825951 NCBI chrNW_004955406:23,866,705...23,881,184
Ensembl chrNW_004955406:23,866,705...23,881,321 		JBrowse link
G Luc7l3 LUC7 like 3 pre-mRNA splicing factor involved_in ISO (PMID:10631324) UniProt PMID:10631324 NCBI chrNW_004955451:11,027,949...11,062,521
Ensembl chrNW_004955451:11,027,949...11,062,519 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO (PMID:18335541) UniProt PMID:18335541 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30538148) UniProt PMID:30538148 NCBI chrNW_004955438:12,726,206...12,780,364
Ensembl chrNW_004955438:12,726,357...12,780,379 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 involved_in ISO (MGI:6267004|PMID:30321814) UniProt PMID:30321814 MGI:6267004 NCBI chrNW_004955559:1,205,340...1,215,672
Ensembl chrNW_004955559:1,203,283...1,215,021 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004955448:8,947,553...9,249,465
Ensembl chrNW_004955448:8,951,336...9,326,257 		JBrowse link
G Scaf11 SR-related CTD associated factor 11 involved_in ISO (PMID:9447963) UniProt PMID:9447963 NCBI chrNW_004955500:5,187,112...5,229,929
Ensembl chrNW_004955500:5,186,954...5,229,887 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:7744013) UniProt PMID:7744013 NCBI chrNW_004955405:32,236,876...32,242,716
Ensembl chrNW_004955405:32,236,876...32,242,716 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:9472028)
(MGI:1195449|PMID:9446799)		 UniProt PMID:9446799 PMID:9472028 MGI:1195449 NCBI chrNW_004955410:9,807,936...10,034,760
Ensembl chrNW_004955410:9,811,584...9,942,323 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 acts_upstream_of_or_within ISO (PMID:15798186)
(PMID:15652482)		 MGI PMID:15652482 PMID:15798186 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 involved_in ISO (PMID:8013463) PINC PMID:8013463 NCBI chrNW_004955441:6,416,709...6,423,185
Ensembl chrNW_004955441:6,416,952...6,423,074 		JBrowse link
G Taf15 TATA-box binding protein associated factor 15 acts_upstream_of_or_within ISO (PMID:27378374) MGI PMID:27378374 NCBI chrNW_004955481:10,242,839...10,274,961
Ensembl chrNW_004955481:10,252,393...10,274,860 		JBrowse link
G Tardbp TAR DNA binding protein involved_in
acts_upstream_of_or_within		 ISO (PMID:11285240)
(PMID:27378374)		 BHF-UCL
MGI		 PMID:11285240 PMID:27378374 NCBI chrNW_004955486:2,656,121...2,674,808
Ensembl chrNW_004955486:2,656,121...2,674,807 		JBrowse link
G Tcerg1 transcription elongation regulator 1 involved_in ISO (PMID:20215116) ARUK-UCL PMID:20215116 NCBI chrNW_004955415:7,597,557...7,665,215
Ensembl chrNW_004955415:7,597,557...7,663,207 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in ISO (MGI:4418642|PMID:9784496) UniProt PMID:9784496 MGI:4418642 NCBI chrNW_004955567:683,472...699,105
Ensembl chrNW_004955567:683,078...697,996 		JBrowse link
G Umod uromodulin acts_upstream_of ISO (PMID:28437467) MGI PMID:28437467 NCBI chrNW_004955442:3,986,936...4,001,155
Ensembl chrNW_004955442:3,985,308...3,999,598 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISO (PMID:22899009) UniProt PMID:22899009 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509 		JBrowse link
G Wbp11 WW domain binding protein 11 acts_upstream_of_or_within ISO (PMID:14640981) MGI PMID:14640981 NCBI chrNW_004955413:11,533,303...11,549,067 JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (MGI:4418642|PMID:9784496) UniProt PMID:9784496 MGI:4418642 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473 		JBrowse link
RNA splicing, via transesterification reactions term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scaf11 SR-related CTD associated factor 11 involved_in ISO (PMID:9447963) UniProt PMID:9447963 NCBI chrNW_004955500:5,187,112...5,229,929
Ensembl chrNW_004955500:5,186,954...5,229,887 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO (PMID:10197984) HGNC-UCL PMID:10197984 NCBI chrNW_004955408:14,268,958...14,288,114
Ensembl chrNW_004955408:14,267,369...14,288,213 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382)
(MGI:1315084|PMID:9774382)		 UniProt PMID:9774382 MGI:1315084 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Wdr83 WD repeat domain 83 involved_in ISO (PMID:11991638) UniProt PMID:11991638 NCBI chrNW_004955415:31,774,017...31,778,737
Ensembl chrNW_004955415:31,774,017...31,778,737 		JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chrNW_004955456:14,047,409...14,057,483
Ensembl chrNW_004955456:14,047,409...14,057,939 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chrNW_004955422:20,767,599...20,768,505
Ensembl chrNW_004955422:20,767,599...20,768,505 		JBrowse link
rRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in ISO (MGI:3838267|PMID:18438418) UniProt PMID:18438418 MGI:3838267 NCBI chrNW_004955463:5,074,921...5,104,341
Ensembl chrNW_004955463:5,075,105...5,102,892 		JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine involved_in ISO (PMID:31665743), (PMID:32371392) UniProt PMID:31665743 PMID:32371392 NCBI chrNW_004955476:7,119,272...7,270,056
Ensembl chrNW_004955476:7,119,044...7,268,685 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO (PMID:31428936), (PMID:31722427)
(MGI:6414744|PMID:31722427)		 UniProt PMID:31428936 PMID:31722427 MGI:6414744 NCBI chrNW_004955456:14,331,890...14,336,650
Ensembl chrNW_004955456:14,331,924...14,335,973 		JBrowse link
rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chrNW_004955446:6,235,004...6,244,422
Ensembl chrNW_004955446:6,234,846...6,244,422 		JBrowse link
G Fbl fibrillarin involved_in ISO (PMID:30540930) UniProt PMID:30540930 NCBI chrNW_004955578:1,176,713...1,186,873
Ensembl chrNW_004955578:1,176,713...1,186,873 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in ISO (MGI:6505165|PMID:32783360), (MGI:6884948|PMID:35033535)
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:35033535)		 UniProt PMID:31328227 PMID:32217665 PMID:32783360 PMID:33357433 PMID:35033535 MGI:6505165 MGI:6884948 NCBI chrNW_004955449:4,795,925...4,806,757
Ensembl chrNW_004955449:4,795,925...4,806,847 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (PMID:23022348)
(MGI:5573024|PMID:24516400)		 UniProt PMID:23022348 PMID:24516400 MGI:5573024 NCBI chrNW_004955464:11,934,146...11,962,513
Ensembl chrNW_004955464:11,932,429...11,967,414 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in ISO (MGI:3843703|PMID:19356719)
(PMID:31251801)		 UniProt PMID:19356719 PMID:31251801 MGI:3843703 NCBI chrNW_004955439:6,889,432...6,943,152
Ensembl chrNW_004955439:6,883,852...6,943,152 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227), (PMID:35033535) UniProt PMID:31328227 PMID:35033535 NCBI chrNW_004955422:20,767,599...20,768,505
Ensembl chrNW_004955422:20,767,599...20,768,505 		JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 involved_in ISO (PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605) UniProt PMID:30531910 PMID:31328227 PMID:31695039 PMID:31799605 NCBI chrNW_004955443:19,664,773...19,717,054
Ensembl chrNW_004955443:19,666,262...19,717,568 		JBrowse link
rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor acts_upstream_of_or_within ISO (PMID:15225545)
(PMID:10891491)		 MGI PMID:10891491 PMID:15225545 NCBI chrNW_004955454:2,882,694...2,907,177
Ensembl chrNW_004955454:2,882,755...2,907,081 		JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in ISO (MGI:6509495|PMID:30283081) UniProt PMID:30283081 MGI:6509495 NCBI chrNW_004955417:27,545,128...27,567,829
Ensembl chrNW_004955417:27,544,242...27,569,715 		JBrowse link
G Ddx27 DEAD-box helicase 27 involved_in ISO (PMID:25825154) UniProt PMID:25825154 NCBI chrNW_004955445:8,881,062...8,899,895
Ensembl chrNW_004955445:8,881,062...8,899,905 		JBrowse link
G Ddx47 DEAD-box helicase 47 involved_in ISO (PMID:16963496) UniProt PMID:16963496 NCBI chrNW_004955413:9,703,777...9,718,802
Ensembl chrNW_004955413:9,703,777...9,718,796 		JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11110791) UniProt PMID:11110791 NCBI chrNW_004955419:28,683,896...28,692,006
Ensembl chrNW_004955419:28,683,896...28,693,395 		JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 acts_upstream_of_or_within ISO (PMID:12655004) MGI PMID:12655004 NCBI chrNW_004955450:2,690,814...2,692,336 JBrowse link
G Las1l LAS1 like ribosome biogenesis factor involved_in ISO (PMID:22083961) UniProt PMID:22083961 NCBI chrNW_004955475:5,143,641...5,189,075
Ensembl chrNW_004955475:5,164,877...5,189,928 		JBrowse link
G Lyar Ly1 antibody reactive involved_in ISO (PMID:24495227) UniProt PMID:24495227 NCBI chrNW_004955514:5,358,843...5,375,990
Ensembl chrNW_004955514:5,358,843...5,376,112 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in ISO (PMID:33428944) UniProt PMID:33428944 NCBI chrNW_004955449:4,795,925...4,806,757
Ensembl chrNW_004955449:4,795,925...4,806,847 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO (PMID:29107693) UniProt PMID:29107693 NCBI chrNW_004955446:12,270,338...12,362,064
Ensembl chrNW_004955446:12,270,344...12,362,882 		JBrowse link
G Nol8 nucleolar protein 8 involved_in ISO (PMID:16963496) UniProt PMID:16963496 NCBI chrNW_004955515:5,448,530...5,473,278
Ensembl chrNW_004955515:5,449,578...5,475,147 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in ISO (PMID:36161484) UniProt PMID:36161484 NCBI chrNW_004955413:4,180,463...4,190,827
Ensembl chrNW_004955413:4,180,573...4,190,490 		JBrowse link
G Npm3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within ISO (PMID:15596447) MGI PMID:15596447 NCBI chrNW_004955485:8,510,404...8,512,198 JBrowse link
G Nvl nuclear VCP like involved_in ISO (PMID:29107693) UniProt PMID:29107693 NCBI chrNW_004955520:1,010,966...1,069,176
Ensembl chrNW_004955520:1,011,621...1,062,286 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within ISO (PMID:16738141)
(PMID:15225545)		 MGI PMID:15225545 PMID:16738141 NCBI chrNW_004955455:4,794,189...4,808,235
Ensembl chrNW_004955455:4,792,182...4,808,258 		JBrowse link
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 involved_in ISO (PMID:19369196) UniProt PMID:19369196 NCBI chrNW_004955475:11,563,379...11,577,133
Ensembl chrNW_004955475:11,562,982...11,581,042 		JBrowse link
G Rnasel ribonuclease L ISO RGD PMID:8469023 RGD:2291995 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955452:3,626,609...3,630,911
Ensembl chrNW_004955452:3,626,609...3,633,209 		JBrowse link
G Rpl14 ribosomal protein L14 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955420:29,430,757...29,434,669
Ensembl chrNW_004955420:29,426,694...29,435,126 		JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955467:8,519,760...8,525,514
Ensembl chrNW_004955467:8,519,760...8,527,182 		JBrowse link
G Rpl27 ribosomal protein L27 involved_in ISO (PMID:25424902) UniProt PMID:25424902 NCBI chrNW_004955451:16,788,505...16,790,468
Ensembl chrNW_004955451:16,788,551...16,790,458 		JBrowse link
G Rpl35a ribosomal protein L35a involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955420:11,957,070...11,960,713
Ensembl chrNW_004955420:11,957,070...11,960,713 		JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955423:1,748,809...1,758,622
Ensembl chrNW_004955423:1,748,809...1,758,622 		JBrowse link
G Rpl7 ribosomal protein L7 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955444:6,910,818...6,914,047 JBrowse link
G Rps15 ribosomal protein S15 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955495:6,492,968...6,495,435
Ensembl chrNW_004955495:6,492,968...6,495,435 		JBrowse link
G Rps16 ribosomal protein S16 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955468:130,244...132,258
Ensembl chrNW_004955468:130,244...132,258 		JBrowse link
G Rps17 ribosomal protein S17 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955416:14,039,596...14,042,908
Ensembl chrNW_004955416:14,039,596...14,042,908 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955555:969,345...976,122
Ensembl chrNW_004955555:969,340...976,509 		JBrowse link
G Rps24 ribosomal protein S24 involved_in ISO (PMID:18230666), (PMID:18697920) UniProt PMID:18230666 PMID:18697920 NCBI chrNW_004955437:14,435,822...14,442,662
Ensembl chrNW_004955437:14,434,771...14,443,106 		JBrowse link
G Rps25 ribosomal protein S25 involved_in ISO (PMID:18697920) FlyBase PMID:18697920 NCBI chrNW_004955412:20,126,769...20,129,071
Ensembl chrNW_004955412:20,126,775...20,128,748 		JBrowse link
G Rps27 ribosomal protein S27 involved_in ISO (PMID:25424902) UniProt PMID:25424902 NCBI chrNW_004955545:599,762...601,399
Ensembl chrNW_004955545:599,762...601,399 		JBrowse link
G Rps28 ribosomal protein S28 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955563:1,073,556...1,074,149
Ensembl chrNW_004955563:1,073,774...1,074,077 		JBrowse link
G Rps6 ribosomal protein S6 involved_in
acts_upstream_of_or_within		 ISO (PMID:18697920)
(PMID:16357222), (PMID:17000767)		 UniProt
MGI		 PMID:16357222 PMID:17000767 PMID:18697920 NCBI chrNW_004955434:21,744,045...21,745,646
Ensembl chrNW_004955434:21,744,082...21,746,626 		JBrowse link
G Rps7 ribosomal protein S7 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chrNW_004955487:3,793,168...3,798,007
Ensembl chrNW_004955487:3,792,870...3,798,153 		JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in ISO (PMID:20038530) UniProt PMID:20038530 NCBI chrNW_004955437:8,995,983...9,001,517
Ensembl chrNW_004955437:8,996,203...9,001,163 		JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in ISO (PMID:33199730) UniProt PMID:33199730 NCBI chrNW_004955413:27,936,427...27,941,311
Ensembl chrNW_004955413:27,933,775...27,941,334 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein involved_in ISO (PMID:26867678) UniProt PMID:26867678 NCBI chrNW_004955532:3,584,111...3,591,234
Ensembl chrNW_004955532:3,581,417...3,591,271 		JBrowse link
G Sbds SBDS ribosome maturation factor involved_in ISO (PMID:17643419) UniProt PMID:17643419 NCBI chrNW_004955456:8,773,917...8,782,427 JBrowse link
G Utp20 UTP20 small subunit processome component involved_in ISO (PMID:17498821) UniProt PMID:17498821 NCBI chrNW_004955405:36,829,984...36,910,149
Ensembl chrNW_004955405:36,830,176...36,909,967 		JBrowse link
G Wdr55 WD repeat domain 55 involved_in ISO (MGI:3847864|PMID:18769712) UniProt PMID:18769712 MGI:3847864 NCBI chrNW_004955418:33,237...37,676
Ensembl chrNW_004955418:33,648...37,556 		JBrowse link
G Wdr74 WD repeat domain 74 involved_in ISO (PMID:29107693) UniProt PMID:29107693 NCBI chrNW_004955599:408,076...413,770
Ensembl chrNW_004955599:407,207...413,770 		JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 acts_upstream_of_or_within ISO (PMID:23726835)
(PMID:15240872)		 MGI PMID:15240872 PMID:23726835 NCBI chrNW_004955594:846,997...857,255
Ensembl chrNW_004955594:847,815...856,510 		JBrowse link
secondary piRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 involved_in ISO (MGI:5908740|PMID:28633017) UniProt PMID:28633017 MGI:5908740 NCBI chrNW_004955446:11,967,222...12,025,537
Ensembl chrNW_004955446:11,967,322...12,024,587 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 involved_in ISO (MGI:3815367|PMID:18922463), (MGI:5908740|PMID:28633017) UniProt PMID:18922463 PMID:28633017 MGI:3815367 MGI:5908740 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3815367|PMID:18922463) UniProt PMID:18922463 MGI:3815367 NCBI chrNW_004955605:331,633...398,528 JBrowse link
siRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (PMID:23661684) ComplexPortal PMID:23661684 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861 		JBrowse link
G Dicer1 dicer 1, ribonuclease III involved_in
acts_upstream_of_or_within		 ISO (PMID:15973356), (PMID:17452327), (PMID:23661684)
(PMID:14528307)
(PMID:19701182)
(MGI:5527004|PMID:24209619)		 UniProt
MGI
BHF-UCL		 PMID:14528307 PMID:15973356 PMID:17452327 PMID:19701182 PMID:23661684 More... MGI:5527004 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:17452327) UniProt PMID:17452327 NCBI chrNW_004955403:18,394,609...18,410,381
Ensembl chrNW_004955403:18,373,375...18,410,627 		JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356), (PMID:17452327), (PMID:23661684) UniProt PMID:15973356 PMID:17452327 PMID:23661684 NCBI chrNW_004955458:793,753...798,755
Ensembl chrNW_004955458:793,759...798,806 		JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO (PMID:19701182) BHF-UCL PMID:19701182 NCBI chrNW_004955504:649,248...669,796
Ensembl chrNW_004955504:651,779...670,589 		JBrowse link
G Tsn translin involved_in ISO (PMID:21552258) ComplexPortal PMID:21552258 NCBI chrNW_004955459:8,285,442...8,299,329
Ensembl chrNW_004955459:8,285,442...8,299,397 		JBrowse link
G Tsnax translin associated factor X involved_in ISO (PMID:21552258) ComplexPortal PMID:21552258 NCBI chrNW_004955492:7,304,982...7,335,512
Ensembl chrNW_004955492:7,306,364...7,335,282 		JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 ISO RGD PMID:12446766 RGD:633420 NCBI chrNW_004955594:846,997...857,255
Ensembl chrNW_004955594:847,815...856,510 		JBrowse link
G Gar1 GAR1 ribonucleoprotein ISO RGD PMID:12446766 RGD:633420 NCBI chrNW_004955496:476,061...483,030
Ensembl chrNW_004955496:475,579...483,030 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein ISO RGD PMID:12446766 RGD:633420 NCBI chrNW_004955408:2,090,772...2,094,453
Ensembl chrNW_004955408:2,090,772...2,094,453 		JBrowse link
G Nop10 NOP10 ribonucleoprotein ISO RGD PMID:12446766 RGD:633420 NCBI chrNW_004955416:272,127...273,068
Ensembl chrNW_004955416:272,127...273,068 		JBrowse link
snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Toe1 target of EGR1, exonuclease involved_in ISO (PMID:28092684) UniProt PMID:28092684 NCBI chrNW_004955464:12,924,185...12,927,567
Ensembl chrNW_004955464:12,924,191...12,927,567 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISO (PMID:26213367) UniProt PMID:26213367 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509 		JBrowse link
snRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:30197295) GO_Central PMID:30197295 NCBI chrNW_004955433:11,424,069...11,834,955
Ensembl chrNW_004955433:11,424,176...11,813,771 		JBrowse link
G Ints1 integrator complex subunit 1 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955460:9,116,650...9,149,470
Ensembl chrNW_004955460:9,116,891...9,143,120 		JBrowse link
G Ints10 integrator complex subunit 10 involved_in ISO (PMID:16239144) HGNC PMID:16239144 NCBI chrNW_004955403:43,519,239...43,546,209
Ensembl chrNW_004955403:43,519,239...43,549,990 		JBrowse link
G Ints11 integrator complex subunit 11 involved_in ISO (PMID:16239144) BHF-UCL PMID:16239144 NCBI chrNW_004955486:9,479,057...9,491,629
Ensembl chrNW_004955486:9,479,057...9,491,629 		JBrowse link
G Ints12 integrator complex subunit 12 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955496:3,564,548...3,580,178
Ensembl chrNW_004955496:3,564,548...3,580,178 		JBrowse link
G Ints2 integrator complex subunit 2 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955451:2,822,081...2,876,117
Ensembl chrNW_004955451:2,822,081...2,876,313 		JBrowse link
G Ints3 integrator complex subunit 3 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955545:352,170...394,751
Ensembl chrNW_004955545:351,872...396,052 		JBrowse link
G Ints4 integrator complex subunit 4 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955414:13,934,830...14,053,648
Ensembl chrNW_004955414:13,934,689...14,056,583 		JBrowse link
G Ints5 integrator complex subunit 5 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955599:551,989...556,341
Ensembl chrNW_004955599:551,078...556,341 		JBrowse link
G Ints6 integrator complex subunit 6 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955431:4,728,011...4,810,236
Ensembl chrNW_004955431:4,728,533...4,809,494 		JBrowse link
G Ints7 integrator complex subunit 7 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955406:5,299,696...5,371,496
Ensembl chrNW_004955406:5,299,697...5,371,896 		JBrowse link
G Ints8 integrator complex subunit 8 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955417:10,975,716...11,027,697
Ensembl chrNW_004955417:10,975,103...11,027,697 		JBrowse link
G Ints9 integrator complex subunit 9 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955403:51,111,418...51,199,430
Ensembl chrNW_004955403:51,109,751...51,199,136 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:16790842) UniProt PMID:16790842 NCBI chrNW_004955599:596,565...606,498
Ensembl chrNW_004955599:596,650...606,486 		JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO (PMID:12084575) UniProt PMID:12084575 NCBI chrNW_004955415:28,158,351...28,171,335
Ensembl chrNW_004955415:28,158,351...28,172,055 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:18593880) BHF-UCL PMID:18593880 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384 		JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in ISO (PMID:24304693) UniProt PMID:24304693 NCBI chrNW_004955424:10,174,291...10,202,201
Ensembl chrNW_004955424:10,173,652...10,200,641 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) CAFA PMID:23793891 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:16332694) BHF-UCL PMID:16332694 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISO (PMID:18951082) UniProt PMID:18951082 NCBI chrNW_004955532:1,929,540...1,957,297
Ensembl chrNW_004955532:1,929,043...1,956,812 		JBrowse link
G Rsrp1 arginine and serine rich protein 1 involved_in ISO (PMID:34042961) UniProt PMID:34042961 NCBI chrNW_004955452:4,865,330...4,871,049 JBrowse link
G Scaf11 SR-related CTD associated factor 11 involved_in ISO (PMID:9447963) UniProt PMID:9447963 NCBI chrNW_004955500:5,187,112...5,229,929
Ensembl chrNW_004955500:5,186,954...5,229,887 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:9472028)
(MGI:1195449|PMID:9446799)		 UniProt PMID:9446799 PMID:9472028 MGI:1195449 NCBI chrNW_004955410:9,807,936...10,034,760
Ensembl chrNW_004955410:9,811,584...9,942,323 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) UniProt PMID:11350945 NCBI chrNW_004955424:1,867,910...1,893,338
Ensembl chrNW_004955424:1,867,850...1,894,157 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:21041408) UniProt PMID:21041408 NCBI chrNW_004955519:2,377,955...2,402,446
Ensembl chrNW_004955519:2,378,246...2,394,561 		JBrowse link
spliceosomal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfip11 tuftelin interacting protein 11 involved_in ISO (PMID:19103666)
(MGI:5545993|PMID:19857462)		 UniProt PMID:19103666 PMID:19857462 MGI:5545993 NCBI chrNW_004955455:1,083,816...1,097,233
Ensembl chrNW_004955455:1,083,816...1,097,233 		JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clns1a chloride nucleotide-sensitive channel 1A involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955414:14,219,909...14,239,450
Ensembl chrNW_004955414:14,219,909...14,238,806 		JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955435:15,209,640...15,219,698
Ensembl chrNW_004955435:15,209,640...15,220,378 		JBrowse link
G Gemin2 gem nuclear organelle associated protein 2 involved_in ISO (PMID:18984161), (PMID:31799625)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 PMID:31799625 NCBI chrNW_004955409:22,142,082...22,153,699
Ensembl chrNW_004955409:22,142,078...22,153,698 		JBrowse link
G Gemin4 gem nuclear organelle associated protein 4 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955481:2,294,406...2,301,297
Ensembl chrNW_004955481:2,294,406...2,301,297 		JBrowse link
G Gemin5 gem nuclear organelle associated protein 5 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955408:9,136,490...9,179,087
Ensembl chrNW_004955408:9,134,191...9,178,980 		JBrowse link
G Gemin6 gem nuclear organelle associated protein 6 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955441:6,456,482...6,461,027
Ensembl chrNW_004955441:6,456,537...6,461,027 		JBrowse link
G Gemin8 gem nuclear organelle associated protein 8 involved_in ISO (PMID:16434402), (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:16434402 PMID:18984161 NCBI chrNW_004955519:4,205,660...4,228,174
Ensembl chrNW_004955519:4,205,651...4,228,059 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:17709427) UniProt PMID:17709427 NCBI chrNW_004955409:37,369,507...37,378,034
Ensembl chrNW_004955409:37,369,234...37,378,093 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO (PMID:17709427) UniProt PMID:17709427 NCBI chrNW_004955484:8,299,427...8,352,465
Ensembl chrNW_004955484:8,299,427...8,340,287 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in ISO (PMID:12077342) UniProt PMID:12077342 NCBI chrNW_004955465:9,359,634...9,392,913
Ensembl chrNW_004955465:9,359,634...9,392,913 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in
NOT|involved_in		 ISO (PMID:14749385), (PMID:15314151)
(PMID:15314151)		 UniProt PMID:14749385 PMID:15314151 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955415:13,522,638...13,530,725
Ensembl chrNW_004955415:13,520,530...13,531,466 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO (PMID:8972845) UniProt PMID:8972845 NCBI chrNW_004955437:2,770,251...2,830,871
Ensembl chrNW_004955437:2,813,296...2,831,036 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955402:10,283,970...10,294,869
Ensembl chrNW_004955402:10,283,970...10,296,495 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955574:157,769...164,947
Ensembl chrNW_004955574:157,769...164,947 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955455:8,021,946...8,045,325
Ensembl chrNW_004955455:8,021,946...8,046,439 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955406:39,725,841...39,732,527
Ensembl chrNW_004955406:39,725,446...39,734,586 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955405:32,236,876...32,242,716
Ensembl chrNW_004955405:32,236,876...32,242,716 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955424:14,844,318...14,851,720
Ensembl chrNW_004955424:14,844,318...14,851,720 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955413:12,533,422...12,558,138
Ensembl chrNW_004955413:12,533,423...12,559,288 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) CACAO PMID:28263986 MGI:5904379 NCBI chrNW_004955437:11,517,094...11,531,816
Ensembl chrNW_004955437:11,517,930...11,531,869 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:35188580) UniProt PMID:35188580 NCBI chrNW_004955422:14,175,271...14,178,991
Ensembl chrNW_004955422:14,175,271...14,178,991 		JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:10523320) MGI PMID:10523320 NCBI chrNW_004955437:321,367...325,556
Ensembl chrNW_004955437:320,768...325,810 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in ISO (PMID:20118938) UniProt PMID:20118938 NCBI chrNW_004955465:9,359,634...9,392,913
Ensembl chrNW_004955465:9,359,634...9,392,913 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955413:429,259...455,449
Ensembl chrNW_004955413:429,259...455,463 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within		 ISO (PMID:15257298)
(PMID:20118938)
(PMID:11867543)		 BHF-UCL
UniProt
MGI		 PMID:11867543 PMID:15257298 PMID:20118938 NCBI chrNW_004955604:125,489...136,209
Ensembl chrNW_004955604:124,686...136,901 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955481:1,499,634...1,530,670
Ensembl chrNW_004955481:1,499,634...1,530,670 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:12032085), (PMID:20595234) UniProt PMID:12032085 PMID:20595234 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:34131137) UniProt PMID:34131137 NCBI chrNW_004955422:14,175,271...14,178,991
Ensembl chrNW_004955422:14,175,271...14,178,991 		JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955532:1,247,110...1,284,564
Ensembl chrNW_004955532:1,247,110...1,285,121 		JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chrNW_004955470:3,828,943...3,856,059
Ensembl chrNW_004955470:3,828,943...3,856,236 		JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) UniProt PMID:36599982 PMID:36599985 PMID:37369656 NCBI chrNW_004955458:5,478,445...5,481,964
Ensembl chrNW_004955458:5,477,833...5,481,946 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) UniProt PMID:36599982 PMID:36599985 PMID:37369656 NCBI chrNW_004955407:39,044,328...39,066,277
Ensembl chrNW_004955407:39,044,328...39,066,277 		JBrowse link
tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 involved_in ISO (PMID:32075755) UniProt PMID:32075755 NCBI chrNW_004955402:35,904,552...35,918,120
Ensembl chrNW_004955402:35,904,553...35,918,111 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:10983981) CAFA PMID:10983981 NCBI chrNW_004955449:4,806,468...4,815,175 JBrowse link
tRNA 3'-terminal CCA addition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO (PMID:25193871), (PMID:25652405), (PMID:29454993), (PMID:30959222), (PMID:31011209), (PMID:32075755), (PMID:34023389) UniProt PMID:25193871 PMID:25652405 PMID:29454993 PMID:30959222 PMID:31011209 More... NCBI chrNW_004955421:10,192,065...10,211,527
Ensembl chrNW_004955421:10,189,469...10,211,434 		JBrowse link
tRNA 5'-leader removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit involved_in ISO (PMID:16723659), (PMID:30454648) UniProt PMID:16723659 PMID:30454648 NCBI chrNW_004955417:13,823,027...13,856,448
Ensembl chrNW_004955417:13,823,057...13,856,448 		JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit involved_in ISO (PMID:16723659), (PMID:30454648) UniProt PMID:16723659 PMID:30454648 NCBI chrNW_004955468:7,983,394...7,994,863
Ensembl chrNW_004955468:7,983,394...7,994,453 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit involved_in ISO (PMID:16723659), (PMID:30454648) UniProt PMID:16723659 PMID:30454648 NCBI chrNW_004955455:11,069,131...11,071,814
Ensembl chrNW_004955455:11,069,131...11,071,814 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit involved_in ISO (PMID:16723659), (PMID:30454648) FlyBase PMID:16723659 PMID:30454648 NCBI chrNW_004955573:217,809...218,915
Ensembl chrNW_004955573:215,932...218,976 		JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 involved_in ISO (PMID:16723659), (PMID:30454648) FlyBase PMID:16723659 PMID:30454648 NCBI chrNW_004955430:1,794,460...1,802,527
Ensembl chrNW_004955430:1,794,460...1,802,527 		JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 involved_in ISO (PMID:16723659), (PMID:30454648) UniProt PMID:16723659 PMID:30454648 NCBI chrNW_004955583:467,197...468,564
Ensembl chrNW_004955583:467,256...468,513 		JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 involved_in ISO (PMID:16723659), (PMID:30454648) FlyBase PMID:16723659 PMID:30454648 NCBI chrNW_004955450:3,026,257...3,027,683
Ensembl chrNW_004955450:3,026,502...3,027,065 		JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 involved_in ISO (PMID:16723659), (PMID:30454648) UniProt PMID:16723659 PMID:30454648 NCBI chrNW_004955425:2,276,006...2,302,882
Ensembl chrNW_004955425:2,273,980...2,303,314 		JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 involved_in ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955429:19,358,765...19,360,973
Ensembl chrNW_004955429:19,358,765...19,360,973 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955465:8,540,500...8,550,255
Ensembl chrNW_004955465:8,540,459...8,550,249 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:10983981) CAFA PMID:10983981 NCBI chrNW_004955449:4,806,468...4,815,175 JBrowse link
tRNA C3-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 involved_in ISO (PMID:32427860) UniProt PMID:32427860 NCBI chrNW_004955532:1,038,861...1,042,362
Ensembl chrNW_004955532:1,038,970...1,041,984 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131), (PMID:35017528) UniProt PMID:34774131 PMID:35017528 NCBI chrNW_004955449:3,458,683...3,534,377
Ensembl chrNW_004955449:3,490,568...3,533,584 		JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:26160102) UniProt PMID:26160102 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614 		JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1 like involved_in ISO (PMID:34798057) UniProt PMID:34798057 NCBI chrNW_004955506:1,097,255...1,104,918
Ensembl chrNW_004955506:1,097,062...1,104,918 		JBrowse link
G Dus2 dihydrouridine synthase 2 involved_in ISO (PMID:26429968), (PMID:34798057) UniProt PMID:26429968 PMID:34798057 NCBI chrNW_004955484:8,564,015...8,609,987
Ensembl chrNW_004955484:8,561,728...8,609,947 		JBrowse link
G Dus3l dihydrouridine synthase 3 like involved_in ISO (PMID:34798057)
(PMID:34556860)		 UniProt PMID:34556860 PMID:34798057 NCBI chrNW_004955495:3,653,613...3,660,331
Ensembl chrNW_004955495:3,653,257...3,660,331 		JBrowse link
G Dus4l dihydrouridine synthase 4 like involved_in ISO (PMID:34798057) UniProt PMID:34798057 NCBI chrNW_004955410:11,919,710...11,931,593
Ensembl chrNW_004955410:11,919,625...11,932,393 		JBrowse link
tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO (PMID:31079898)
(MGI:4461096|PMID:20123966)
(PMID:20308323)		 UniProt PMID:20123966 PMID:20308323 PMID:31079898 MGI:4461096 NCBI chrNW_004955412:9,875,905...9,923,728 JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:28119416), (PMID:31919512) UniProt PMID:28119416 PMID:31919512 NCBI chrNW_004955547:427,127...432,482
Ensembl chrNW_004955547:427,432...432,455 		JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:25404562)
(PMID:36720500)		 UniProt PMID:25404562 PMID:36720500 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111 		JBrowse link
G Mettl2a methyltransferase 2A, tRNA N3-cytidine involved_in ISO (PMID:34268557)
(PMID:28655767)		 UniProt
MGI		 PMID:28655767 PMID:34268557 NCBI chrNW_004955478:9,263,817...9,277,850 JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:32923617), (PMID:34268557), (PMID:34862464), (PMID:34922197)
(PMID:28655767)		 UniProt
MGI		 PMID:28655767 PMID:32923617 PMID:34268557 PMID:34862464 PMID:34922197 NCBI chrNW_004955430:1,910,557...1,933,249
Ensembl chrNW_004955430:1,909,404...1,933,239 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:17071714), (PMID:31287866)
(MGI:6368097|PMID:31287866), (MGI:6368099|PMID:23871666), (MGI:6368109|PMID:31276587)
(MGI:5304206|PMID:22144916), (MGI:6194005|PMID:22885326)		 UniProt PMID:17071714 PMID:22144916 PMID:22885326 PMID:23871666 PMID:31276587 More... MGI:5304206 MGI:6194005 MGI:6368097 MGI:6368099 MGI:6368109 NCBI chrNW_004955504:4,339,044...4,360,176
Ensembl chrNW_004955504:4,338,855...4,361,520 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:28531330) UniProt PMID:28531330 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614 		JBrowse link
G Thada THADA armadillo repeat containing involved_in ISO (PMID:25404562) UniProt PMID:25404562 NCBI chrNW_004955441:10,471,555...10,792,881
Ensembl chrNW_004955441:10,470,533...10,774,601 		JBrowse link
G Thumpd3 THUMP domain containing 3 involved_in ISO (PMID:34669960) UniProt PMID:34669960 NCBI chrNW_004955561:933,168...956,457
Ensembl chrNW_004955561:933,173...956,457 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:6194005|PMID:22885326)
(PMID:16424344)		 UniProt
MGI		 PMID:16424344 PMID:22885326 MGI:6194005 NCBI chrNW_004955429:10,741,512...10,774,268
Ensembl chrNW_004955429:10,742,097...10,771,877 		JBrowse link
G Trmo tRNA methyltransferase O involved_in ISO (PMID:25063302) UniProt PMID:25063302 NCBI chrNW_004955419:27,553,040...27,568,417
Ensembl chrNW_004955419:27,553,058...27,568,332 		JBrowse link
G Trmt10a tRNA methyltransferase 10A involved_in ISO (PMID:25053765) UniProt PMID:25053765 NCBI chrNW_004955496:8,021,747...8,037,562
Ensembl chrNW_004955496:8,026,569...8,037,802 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:34669960) UniProt PMID:34669960 NCBI chrNW_004955422:20,767,599...20,768,505
Ensembl chrNW_004955422:20,767,599...20,768,505 		JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO (MGI:5635958|PMID:25738458) GOC PMID:25738458 MGI:5635958 NCBI chrNW_004955422:27,878,048...27,907,157
Ensembl chrNW_004955422:27,879,389...27,906,861 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1 like 1 acts_upstream_of_or_within ISO (PMID:21841312) MGI PMID:21841312 NCBI chrNW_004955483:5,398,748...5,993,071
Ensembl chrNW_004955483:5,398,687...5,993,079 		JBrowse link
tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5609717|PMID:25422440)
(PMID:16906134)
(MGI:6159204|PMID:29769718)		 UniProt
MGI		 PMID:16906134 PMID:25422440 PMID:29769718 MGI:5609717 MGI:6159204 NCBI chrNW_004955484:3,090,678...3,115,224
Ensembl chrNW_004955484:3,089,235...3,115,230 		JBrowse link
G Ankrd16 ankyrin repeat domain 16 involved_in ISO (MGI:6159204|PMID:29769718) UniProt PMID:29769718 MGI:6159204 NCBI chrNW_004955421:22,520,707...22,535,618
Ensembl chrNW_004955421:22,521,284...22,534,873 		JBrowse link
G B3gntl1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 involved_in ISO PMID:37992713
(PMID:37992713)		 UniProt PMID:37992713 RGD:401966881 NCBI chrNW_004955506:165,383...272,051
Ensembl chrNW_004955506:165,341...272,051 		JBrowse link
G Dtwd1 DTW domain containing 1 involved_in ISO (PMID:31804502) UniProt PMID:31804502 NCBI chrNW_004955409:4,550,906...4,568,484
Ensembl chrNW_004955409:4,548,237...4,568,477 		JBrowse link
G Dtwd2 DTW domain containing 2 involved_in ISO (PMID:31804502) UniProt PMID:31804502 NCBI chrNW_004955408:38,497,442...38,609,561
Ensembl chrNW_004955408:38,497,442...38,609,561 		JBrowse link
G Gtdc1 glycosyltransferase like domain containing 1 involved_in ISO PMID:37992713
(PMID:37992713)		 UniProt PMID:37992713 RGD:401966881 NCBI chrNW_004955440:10,334,584...10,702,436
Ensembl chrNW_004955440:10,334,533...10,613,876 		JBrowse link
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:12403464), (PMID:15861136) UniProt PMID:12403464 PMID:15861136 NCBI chrNW_004955458:5,478,445...5,481,964
Ensembl chrNW_004955458:5,477,833...5,481,946 		JBrowse link
G Mettl2a methyltransferase 2A, tRNA N3-cytidine involved_in ISO (PMID:34268557) UniProt PMID:34268557 NCBI chrNW_004955478:9,263,817...9,277,850 JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:34268557) UniProt PMID:34268557 NCBI chrNW_004955430:1,910,557...1,933,249
Ensembl chrNW_004955430:1,909,404...1,933,239 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:37226891) FlyBase PMID:37226891 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISO (PMID:28805828) UniProt PMID:28805828 NCBI chrNW_004955550:1,266,191...1,273,093
Ensembl chrNW_004955550:1,265,401...1,273,299 		JBrowse link
G Sars1 seryl-tRNA synthetase 1 involved_in ISO (PMID:34268557) UniProt PMID:34268557 NCBI chrNW_004955435:12,642,485...12,659,833
Ensembl chrNW_004955435:12,641,776...12,660,682 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in ISO (PMID:16424344) UniProt PMID:16424344 NCBI chrNW_004955429:10,741,512...10,774,268
Ensembl chrNW_004955429:10,742,097...10,771,877 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:24126054)
(MGI:5476410|PMID:23289710)		 UniProt PMID:23289710 PMID:24126054 MGI:5476410 NCBI chrNW_004955452:17,330,446...17,378,579
Ensembl chrNW_004955452:17,330,446...17,378,579 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISO (PMID:32926445) UniProt PMID:32926445 NCBI chrNW_004955431:19,840,827...19,877,930
Ensembl chrNW_004955431:19,840,662...19,877,930 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:15861136) UniProt PMID:15861136 NCBI chrNW_004955407:39,044,328...39,066,277
Ensembl chrNW_004955407:39,044,328...39,066,277 		JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in ISO (PMID:32392304) UniProt PMID:32392304 NCBI chrNW_004955496:8,021,747...8,037,562
Ensembl chrNW_004955496:8,026,569...8,037,802 		JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:26310293) UniProt PMID:26310293 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111 		JBrowse link
G Thada THADA armadillo repeat containing involved_in ISO (PMID:35559166) UniProt PMID:35559166 NCBI chrNW_004955441:10,471,555...10,792,881
Ensembl chrNW_004955441:10,470,533...10,774,601 		JBrowse link
tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat1 adenosine deaminase tRNA specific 1 involved_in ISO (PMID:10430867) UniProt PMID:10430867 NCBI chrNW_004955484:1,942,868...1,964,901
Ensembl chrNW_004955484:1,942,529...1,967,830 		JBrowse link
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial involved_in ISO (PMID:10329163) UniProt PMID:10329163 NCBI chrNW_004955465:7,878,115...8,345,749
Ensembl chrNW_004955465:7,877,824...8,241,742 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit acts_upstream_of_or_within ISO (PMID:11413139) MGI PMID:11413139 NCBI chrNW_004955455:11,069,131...11,071,814
Ensembl chrNW_004955455:11,069,131...11,071,814 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:17308035) RGD
CAFA		 PMID:12049746 PMID:17308035 RGD:737671 NCBI chrNW_004955449:4,806,468...4,815,175 JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1 like involved_in ISO (PMID:21059936) UniProt PMID:21059936 NCBI chrNW_004955408:11,857,380...11,863,786
Ensembl chrNW_004955408:11,857,380...11,866,270 		JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:1928672|PMID:10094309)
(PMID:11027153), (PMID:11085940), (PMID:15327771)
(MGI:5810940|PMID:27197761)
(PMID:15772074)		 UniProt
MGI		 PMID:10094309 PMID:11027153 PMID:11085940 PMID:15327771 PMID:15772074 More... MGI:1928672 MGI:5810940 NCBI chrNW_004955482:749,265...756,964
Ensembl chrNW_004955482:748,394...756,747 		JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO (PMID:30530625), (PMID:31819270) UniProt PMID:30530625 PMID:31819270 NCBI chrNW_004955424:22,830,889...22,899,420
Ensembl chrNW_004955424:22,832,882...22,899,420 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:27055666)
(PMID:11027153)		 UniProt
MGI		 PMID:11027153 PMID:27055666 NCBI chrNW_004955412:26,941,837...26,951,524
Ensembl chrNW_004955412:26,942,082...26,945,624 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141), (PMID:34718722) UniProt PMID:29628141 PMID:34718722 NCBI chrNW_004955410:10,062,768...10,119,751
Ensembl chrNW_004955410:10,060,071...10,119,757 		JBrowse link
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO (PMID:24766809), (PMID:24766810)
(PMID:17495927)		 UniProt PMID:17495927 PMID:24766809 PMID:24766810 NCBI chrNW_004955511:2,588,825...2,592,108
Ensembl chrNW_004955511:2,588,825...2,593,192 		JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in ISO (PMID:24870230) UniProt PMID:24870230 NCBI chrNW_004955487:9,085,950...9,117,599
Ensembl chrNW_004955487:9,085,918...9,119,979 		JBrowse link
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase involved_in ISO (PMID:21311021), (PMID:24870230) UniProt PMID:21311021 PMID:24870230 NCBI chrNW_004955405:41,360,370...41,375,215
Ensembl chrNW_004955405:41,360,370...41,375,215 		JBrowse link
G Rtraf RNA transcription, translation and transport factor involved_in ISO (PMID:24870230) UniProt PMID:24870230 NCBI chrNW_004955409:11,034,815...11,049,400
Ensembl chrNW_004955409:11,034,815...11,049,878 		JBrowse link
G Trpt1 tRNA phosphotransferase 1 acts_upstream_of_or_within ISO (PMID:9826666) MGI PMID:9826666 NCBI chrNW_004955422:20,851,806...20,854,349
Ensembl chrNW_004955422:20,851,972...20,857,881 		JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 involved_in ISO (PMID:17495927) UniProt PMID:17495927 NCBI chrNW_004955429:14,970,105...14,997,459
Ensembl chrNW_004955429:14,969,289...14,997,220 		JBrowse link
G Tsen54 tRNA splicing endonuclease subunit 54 involved_in ISO (PMID:17495927) UniProt PMID:17495927 NCBI chrNW_004955553:2,367,476...2,376,704
Ensembl chrNW_004955553:2,367,480...2,376,704 		JBrowse link
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand involved_in ISO (PMID:24870230) UniProt PMID:24870230 NCBI chrNW_004955452:10,944,281...10,955,250
Ensembl chrNW_004955452:10,944,281...10,955,631 		JBrowse link
tRNA thio-modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811)
(PMID:30817134)		 UniProt PMID:19017811 PMID:30817134 NCBI chrNW_004955445:7,470,030...7,472,323
Ensembl chrNW_004955445:7,470,888...7,472,267 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) UniProt PMID:19017811 NCBI chrNW_004955570:876,487...894,045
Ensembl chrNW_004955570:876,487...894,045 		JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gon7 GON7 subunit of KEOPS complex involved_in ISO (PMID:31481669) UniProt PMID:31481669 NCBI chrNW_004955438:15,319,033...15,321,648 JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISO (PMID:28805828)
(PMID:31481669)		 UniProt PMID:28805828 PMID:31481669 NCBI chrNW_004955550:1,266,191...1,273,093
Ensembl chrNW_004955550:1,265,401...1,273,299 		JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase like 1 involved_in ISO (PMID:29760464), (PMID:32047918) UniProt PMID:29760464 PMID:32047918 NCBI chrNW_004955403:9,118,419...9,136,840
Ensembl chrNW_004955403:9,118,406...9,138,710 		JBrowse link
G Tprkb TP53RK binding protein involved_in ISO (PMID:28805828) UniProt PMID:28805828 NCBI chrNW_004955424:11,961,994...11,969,610
Ensembl chrNW_004955424:11,961,994...11,969,610 		JBrowse link
G Yrdc yrdC N6-threonylcarbamoyltransferase domain containing involved_in ISO (PMID:29760464), (PMID:31481669), (PMID:34545459) UniProt PMID:29760464 PMID:31481669 PMID:34545459 NCBI chrNW_004955452:15,575,421...15,579,186
Ensembl chrNW_004955452:15,575,421...15,579,186 		JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) UniProt PMID:27214402 PMID:27356879 PMID:27497299 NCBI chrNW_004955407:3,322,246...3,397,289
Ensembl chrNW_004955407:3,342,876...3,397,150 		JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) UniProt PMID:27497299 NCBI chrNW_004955438:1,531,114...1,556,483
Ensembl chrNW_004955438:1,531,114...1,556,481 		JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO (PMID:21285950)
(MGI:5607402|PMID:20583019)
(PMID:31079898)		 UniProt PMID:20583019 PMID:21285950 PMID:31079898 MGI:5607402 NCBI chrNW_004955412:9,875,905...9,923,728 JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 involved_in ISO (MGI:5506828|PMID:23717213) UniProt PMID:23717213 MGI:5506828 NCBI chrNW_004955419:18,035,197...18,097,681
Ensembl chrNW_004955419:18,038,507...18,095,894 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in ISO (PMID:29415125) UniProt PMID:29415125 NCBI chrNW_004955403:50,565,496...50,635,226
Ensembl chrNW_004955403:50,565,583...50,637,294 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811) UniProt PMID:19017811 NCBI chrNW_004955445:7,470,030...7,472,323
Ensembl chrNW_004955445:7,470,888...7,472,267 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within ISO (PMID:14522080) MGI PMID:14522080 NCBI chrNW_004955493:8,636,093...8,655,090
Ensembl chrNW_004955493:8,636,110...8,649,721 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) UniProt PMID:19017811 NCBI chrNW_004955570:876,487...894,045
Ensembl chrNW_004955570:876,487...894,045 		JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 involved_in ISO (PMID:20354154), (PMID:34241577)
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)		 ComplexPortal
UniProt		 PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 MGI:3850292 MGI:7565917 NCBI chrNW_004955495:1,851,861...1,857,599
Ensembl chrNW_004955495:1,851,995...1,857,527 		JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 involved_in ISO (PMID:20354154), (PMID:34241577)
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)		 UniProt PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 MGI:3850292 MGI:7565917 NCBI chrNW_004955427:14,139,024...14,169,402
Ensembl chrNW_004955427:14,138,161...14,171,709 		JBrowse link
U2 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chrNW_004955460:9,116,650...9,149,470
Ensembl chrNW_004955460:9,116,891...9,143,120 		JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx42 DEAD-box helicase 42 involved_in ISO (PMID:36797247) UniProt PMID:36797247 NCBI chrNW_004955478:8,009,155...8,052,990
Ensembl chrNW_004955478:8,010,056...8,041,449 		JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISO (PMID:36797247) UniProt PMID:36797247 NCBI chrNW_004955408:29,981,509...30,031,473
Ensembl chrNW_004955408:29,981,229...30,031,473 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310) UniProt PMID:32494006 PMID:34822310 NCBI chrNW_004955489:8,607,649...8,622,044
Ensembl chrNW_004955489:8,607,629...8,622,044 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in ISO (PMID:10882114), (PMID:11533230) UniProt PMID:10882114 PMID:11533230 NCBI chrNW_004955455:4,579,153...4,601,942
Ensembl chrNW_004955455:4,577,329...4,602,141 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in ISO (PMID:11533230) UniProt PMID:11533230 NCBI chrNW_004955495:5,896,648...5,904,287
Ensembl chrNW_004955495:5,896,648...5,904,056 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in ISO (PMID:11533230) UniProt PMID:11533230 NCBI chrNW_004955452:15,691,729...15,715,782
Ensembl chrNW_004955452:15,691,497...15,716,524 		JBrowse link
U6 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:28589955) UniProt PMID:28589955 NCBI chrNW_004955599:596,565...606,498
Ensembl chrNW_004955599:596,650...606,486 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISO (PMID:23190533)
(PMID:22899009), (PMID:23022480), (PMID:26213367)		 UniProt PMID:22899009 PMID:23022480 PMID:23190533 PMID:26213367 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509 		JBrowse link
wobble position ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:32558197) UniProt PMID:32558197 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISO (PMID:32558197) UniProt PMID:32558197 NCBI chrNW_004955532:1,029,857...1,039,020
Ensembl chrNW_004955532:1,028,466...1,039,020 		JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tyw5 tRNA-yW synthesizing protein 5 involved_in ISO (PMID:20739293), (PMID:20972222) UniProt PMID:20739293 PMID:20972222 NCBI chrNW_004955403:1,326,027...1,351,039
Ensembl chrNW_004955403:1,326,029...1,345,563 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12360
    metabolic process 7487
      organic substance metabolic process 7172
        macromolecule metabolic process 6026
          macromolecule biosynthetic process 4619
            gene expression 4283
              RNA processing 583
                RNA 3'-end processing + 50
                RNA 5'-end processing + 22
                RNA polyadenylation at postsynapse 1
                RNA splicing + 276
                chloroplast RNA processing + 0
                lncRNA processing + 1
                mRNA processing + 280
                mitochondrial RNA processing + 17
                rRNA processing + 89
                regulatory ncRNA processing + 62
                snRNA processing + 16
                sno(s)RNA processing + 3
                tRNA processing + 86
                tRNA-type intron splice site recognition and cleavage 0
Path 2
Term Annotations click to browse term
  biological_process 12360
    metabolic process 7487
      organic substance metabolic process 7172
        organic cyclic compound metabolic process 4094
          nucleobase-containing compound metabolic process 3737
            nucleic acid metabolic process 3370
              RNA metabolic process 2899
                RNA processing 583
                  RNA 3'-end processing + 50
                  RNA 5'-end processing + 22
                  RNA polyadenylation at postsynapse 1
                  RNA splicing + 276
                  chloroplast RNA processing + 0
                  lncRNA processing + 1
                  mRNA processing + 280
                  mitochondrial RNA processing + 17
                  rRNA processing + 89
                  regulatory ncRNA processing + 62
                  snRNA processing + 16
                  sno(s)RNA processing + 3
                  tRNA processing + 86
                  tRNA-type intron splice site recognition and cleavage 0
paths to the root