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ONTOLOGY REPORT - ANNOTATIONS

Term:tRNA modification
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Accession:GO:0006400 term browser browse the term
Definition:The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
Comment:The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. Parallel changes were made for substrate (e.g. tRNA, rRNA, etc.) specific child terms of 'RNA editing'.
Synonyms:narrow_synonym: tRNA editing
 alt_id: GO:0016549

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show annotations for term's descendants           Sort by:
tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5609717|PMID:25422440)
(PMID:16906134)
(MGI:6159204|PMID:29769718)		 UniProt
MGI		 PMID:16906134 PMID:25422440 PMID:29769718 MGI:5609717 MGI:6159204 NCBI chrNW_004955484:3,090,678...3,115,224
Ensembl chrNW_004955484:3,089,235...3,115,230 		JBrowse link
G Ankrd16 ankyrin repeat domain 16 involved_in ISO (MGI:6159204|PMID:29769718) UniProt PMID:29769718 MGI:6159204 NCBI chrNW_004955421:22,520,707...22,535,618
Ensembl chrNW_004955421:22,521,284...22,534,873 		JBrowse link
G B3gntl1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 involved_in ISO PMID:37992713
(PMID:37992713)		 UniProt PMID:37992713 RGD:401966881 NCBI chrNW_004955506:165,383...272,051
Ensembl chrNW_004955506:165,341...272,051 		JBrowse link
G Dtwd1 DTW domain containing 1 involved_in ISO (PMID:31804502) UniProt PMID:31804502 NCBI chrNW_004955409:4,550,906...4,568,484
Ensembl chrNW_004955409:4,548,237...4,568,477 		JBrowse link
G Dtwd2 DTW domain containing 2 involved_in ISO (PMID:31804502) UniProt PMID:31804502 NCBI chrNW_004955408:38,497,442...38,609,561
Ensembl chrNW_004955408:38,497,442...38,609,561 		JBrowse link
G Gtdc1 glycosyltransferase like domain containing 1 involved_in ISO PMID:37992713
(PMID:37992713)		 UniProt PMID:37992713 RGD:401966881 NCBI chrNW_004955440:10,334,584...10,702,436
Ensembl chrNW_004955440:10,334,533...10,613,876 		JBrowse link
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:12403464), (PMID:15861136) UniProt PMID:12403464 PMID:15861136 NCBI chrNW_004955458:5,478,445...5,481,964
Ensembl chrNW_004955458:5,477,833...5,481,946 		JBrowse link
G Mettl2a methyltransferase 2A, tRNA N3-cytidine involved_in ISO (PMID:34268557) UniProt PMID:34268557 NCBI chrNW_004955478:9,263,817...9,277,850 JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:34268557) UniProt PMID:34268557 NCBI chrNW_004955430:1,910,557...1,933,249
Ensembl chrNW_004955430:1,909,404...1,933,239 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:37226891) FlyBase PMID:37226891 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISO (PMID:28805828) UniProt PMID:28805828 NCBI chrNW_004955550:1,266,191...1,273,093
Ensembl chrNW_004955550:1,265,401...1,273,299 		JBrowse link
G Sars1 seryl-tRNA synthetase 1 involved_in ISO (PMID:34268557) UniProt PMID:34268557 NCBI chrNW_004955435:12,642,485...12,659,833
Ensembl chrNW_004955435:12,641,776...12,660,682 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:24126054)
(MGI:5476410|PMID:23289710)		 UniProt PMID:23289710 PMID:24126054 MGI:5476410 NCBI chrNW_004955452:17,330,446...17,378,579
Ensembl chrNW_004955452:17,330,446...17,378,579 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISO (PMID:32926445) UniProt PMID:32926445 NCBI chrNW_004955431:19,840,827...19,877,930
Ensembl chrNW_004955431:19,840,662...19,877,930 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:15861136) UniProt PMID:15861136 NCBI chrNW_004955407:39,044,328...39,066,277
Ensembl chrNW_004955407:39,044,328...39,066,277 		JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in ISO (PMID:25288793) UniProt PMID:25288793 NCBI chrNW_004955450:10,399,472...10,415,813
Ensembl chrNW_004955450:10,399,470...10,415,872 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 involved_in ISO (PMID:23042678), (PMID:25925575), (PMID:28888424) UniProt PMID:23042678 PMID:25925575 PMID:28888424 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) ComplexPortal PMID:23042678 NCBI chrNW_004955427:3,133,225...3,137,070
Ensembl chrNW_004955427:3,135,518...3,136,786 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO (PMID:26189817) UniProt PMID:26189817 NCBI chrNW_004955466:8,679,795...8,690,203
Ensembl chrNW_004955466:8,680,429...8,685,942 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO (PMID:25738458) MGI PMID:25738458 NCBI chrNW_004955422:27,878,048...27,907,157
Ensembl chrNW_004955422:27,879,389...27,906,861 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131) UniProt PMID:34774131 NCBI chrNW_004955449:3,458,683...3,534,377
Ensembl chrNW_004955449:3,490,568...3,533,584 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:24901367), (PMID:34774131) UniProt PMID:24901367 PMID:34774131 NCBI chrNW_004955452:17,330,446...17,378,579
Ensembl chrNW_004955452:17,330,446...17,378,579 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) FlyBase PMID:28082677 NCBI chrNW_004955412:27,231,371...27,239,366
Ensembl chrNW_004955412:27,229,492...27,239,339 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within ISO (PMID:14522080) MGI PMID:14522080 NCBI chrNW_004955493:8,636,093...8,655,090
Ensembl chrNW_004955493:8,636,110...8,649,721 		JBrowse link
regulation of translational initiation by tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27745969) UniProt PMID:27745969 NCBI chrNW_004955438:1,531,114...1,556,483
Ensembl chrNW_004955438:1,531,114...1,556,481 		JBrowse link
regulation of tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:15861136) UniProt PMID:15861136 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904 		JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) UniProt PMID:36599982 PMID:36599985 PMID:37369656 NCBI chrNW_004955458:5,478,445...5,481,964
Ensembl chrNW_004955458:5,477,833...5,481,946 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) UniProt PMID:36599982 PMID:36599985 PMID:37369656 NCBI chrNW_004955407:39,044,328...39,066,277
Ensembl chrNW_004955407:39,044,328...39,066,277 		JBrowse link
tRNA C3-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 involved_in ISO (PMID:32427860) UniProt PMID:32427860 NCBI chrNW_004955532:1,038,861...1,042,362
Ensembl chrNW_004955532:1,038,970...1,041,984 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131), (PMID:35017528) UniProt PMID:34774131 PMID:35017528 NCBI chrNW_004955449:3,458,683...3,534,377
Ensembl chrNW_004955449:3,490,568...3,533,584 		JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:26160102) UniProt PMID:26160102 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614 		JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1 like involved_in ISO (PMID:34798057) UniProt PMID:34798057 NCBI chrNW_004955506:1,097,255...1,104,918
Ensembl chrNW_004955506:1,097,062...1,104,918 		JBrowse link
G Dus2 dihydrouridine synthase 2 involved_in ISO (PMID:26429968), (PMID:34798057) UniProt PMID:26429968 PMID:34798057 NCBI chrNW_004955484:8,564,015...8,609,987
Ensembl chrNW_004955484:8,561,728...8,609,947 		JBrowse link
G Dus3l dihydrouridine synthase 3 like involved_in ISO (PMID:34798057)
(PMID:34556860)		 UniProt PMID:34556860 PMID:34798057 NCBI chrNW_004955495:3,653,613...3,660,331
Ensembl chrNW_004955495:3,653,257...3,660,331 		JBrowse link
G Dus4l dihydrouridine synthase 4 like involved_in ISO (PMID:34798057) UniProt PMID:34798057 NCBI chrNW_004955410:11,919,710...11,931,593
Ensembl chrNW_004955410:11,919,625...11,932,393 		JBrowse link
tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO (PMID:31079898)
(MGI:4461096|PMID:20123966)
(PMID:20308323)		 UniProt PMID:20123966 PMID:20308323 PMID:31079898 MGI:4461096 NCBI chrNW_004955412:9,875,905...9,923,728 JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:28119416), (PMID:31919512) UniProt PMID:28119416 PMID:31919512 NCBI chrNW_004955547:427,127...432,482
Ensembl chrNW_004955547:427,432...432,455 		JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:25404562)
(PMID:36720500)		 UniProt PMID:25404562 PMID:36720500 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111 		JBrowse link
G Mettl2a methyltransferase 2A, tRNA N3-cytidine involved_in ISO (PMID:28655767)
(PMID:34268557)		 UniProt
MGI		 PMID:28655767 PMID:34268557 NCBI chrNW_004955478:9,263,817...9,277,850 JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:32923617), (PMID:34268557), (PMID:34862464), (PMID:34922197)
(PMID:28655767)		 UniProt
MGI		 PMID:28655767 PMID:32923617 PMID:34268557 PMID:34862464 PMID:34922197 NCBI chrNW_004955430:1,910,557...1,933,249
Ensembl chrNW_004955430:1,909,404...1,933,239 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:17071714), (PMID:31287866)
(MGI:6368097|PMID:31287866), (MGI:6368099|PMID:23871666), (MGI:6368109|PMID:31276587)
(MGI:5304206|PMID:22144916), (MGI:6194005|PMID:22885326)		 UniProt PMID:17071714 PMID:22144916 PMID:22885326 PMID:23871666 PMID:31276587 More... MGI:5304206 MGI:6194005 MGI:6368097 MGI:6368099 MGI:6368109 NCBI chrNW_004955504:4,339,044...4,360,176
Ensembl chrNW_004955504:4,338,855...4,361,520 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:28531330) UniProt PMID:28531330 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614 		JBrowse link
G Thada THADA armadillo repeat containing involved_in ISO (PMID:25404562) UniProt PMID:25404562 NCBI chrNW_004955441:10,471,555...10,792,881
Ensembl chrNW_004955441:10,470,533...10,774,601 		JBrowse link
G Thumpd3 THUMP domain containing 3 involved_in ISO (PMID:34669960) UniProt PMID:34669960 NCBI chrNW_004955561:933,168...956,457
Ensembl chrNW_004955561:933,173...956,457 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:6194005|PMID:22885326)
(PMID:16424344)		 UniProt
MGI		 PMID:16424344 PMID:22885326 MGI:6194005 NCBI chrNW_004955429:10,741,512...10,774,268
Ensembl chrNW_004955429:10,742,097...10,771,877 		JBrowse link
G Trmo tRNA methyltransferase O involved_in ISO (PMID:25063302) UniProt PMID:25063302 NCBI chrNW_004955419:27,553,040...27,568,417
Ensembl chrNW_004955419:27,553,058...27,568,332 		JBrowse link
G Trmt10a tRNA methyltransferase 10A involved_in ISO (PMID:25053765) UniProt PMID:25053765 NCBI chrNW_004955496:8,021,747...8,037,562
Ensembl chrNW_004955496:8,026,569...8,037,802 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:34669960) UniProt PMID:34669960 NCBI chrNW_004955422:20,767,599...20,768,505
Ensembl chrNW_004955422:20,767,599...20,768,505 		JBrowse link
G Trmt6 tRNA methyltransferase 6 non-catalytic subunit involved_in ISO (PMID:16043508) ComplexPortal PMID:16043508 NCBI chrNW_004955415:16,333,766...16,390,112
Ensembl chrNW_004955415:16,330,482...16,344,973 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in ISO (PMID:16043508) ComplexPortal PMID:16043508 NCBI chrNW_004955538:2,383,666...2,393,667
Ensembl chrNW_004955538:2,383,666...2,396,402 		JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO (MGI:5635958|PMID:25738458) GOC PMID:25738458 MGI:5635958 NCBI chrNW_004955422:27,878,048...27,907,157
Ensembl chrNW_004955422:27,879,389...27,906,861 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1 like 1 acts_upstream_of_or_within ISO (PMID:21841312) MGI PMID:21841312 NCBI chrNW_004955483:5,398,748...5,993,071
Ensembl chrNW_004955483:5,398,687...5,993,079 		JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in ISO (PMID:32392304) UniProt PMID:32392304 NCBI chrNW_004955496:8,021,747...8,037,562
Ensembl chrNW_004955496:8,026,569...8,037,802 		JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:26310293) UniProt PMID:26310293 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111 		JBrowse link
G Thada THADA armadillo repeat containing involved_in ISO (PMID:35559166) UniProt PMID:35559166 NCBI chrNW_004955441:10,471,555...10,792,881
Ensembl chrNW_004955441:10,470,533...10,774,601 		JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:1928672|PMID:10094309)
(PMID:11027153), (PMID:11085940), (PMID:15327771)
(MGI:5810940|PMID:27197761)
(PMID:15772074)		 UniProt
MGI		 PMID:10094309 PMID:11027153 PMID:11085940 PMID:15327771 PMID:15772074 More... MGI:1928672 MGI:5810940 NCBI chrNW_004955482:749,265...756,964
Ensembl chrNW_004955482:748,394...756,747 		JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO (PMID:30530625), (PMID:31819270) UniProt PMID:30530625 PMID:31819270 NCBI chrNW_004955424:22,830,889...22,899,420
Ensembl chrNW_004955424:22,832,882...22,899,420 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:27055666)
(PMID:11027153)		 UniProt
MGI		 PMID:11027153 PMID:27055666 NCBI chrNW_004955412:26,941,837...26,951,524
Ensembl chrNW_004955412:26,942,082...26,945,624 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141), (PMID:34718722) UniProt PMID:29628141 PMID:34718722 NCBI chrNW_004955410:10,062,768...10,119,751
Ensembl chrNW_004955410:10,060,071...10,119,757 		JBrowse link
tRNA thio-modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811)
(PMID:30817134)		 UniProt PMID:19017811 PMID:30817134 NCBI chrNW_004955445:7,470,030...7,472,323
Ensembl chrNW_004955445:7,470,888...7,472,267 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) UniProt PMID:19017811 NCBI chrNW_004955570:876,487...894,045
Ensembl chrNW_004955570:876,487...894,045 		JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gon7 GON7 subunit of KEOPS complex involved_in ISO (PMID:31481669) UniProt PMID:31481669 NCBI chrNW_004955438:15,319,033...15,321,648 JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISO (PMID:28805828)
(PMID:31481669)		 UniProt PMID:28805828 PMID:31481669 NCBI chrNW_004955550:1,266,191...1,273,093
Ensembl chrNW_004955550:1,265,401...1,273,299 		JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase like 1 involved_in ISO (PMID:29760464), (PMID:32047918) UniProt PMID:29760464 PMID:32047918 NCBI chrNW_004955403:9,118,419...9,136,840
Ensembl chrNW_004955403:9,118,406...9,138,710 		JBrowse link
G Tprkb TP53RK binding protein involved_in ISO (PMID:28805828) UniProt PMID:28805828 NCBI chrNW_004955424:11,961,994...11,969,610
Ensembl chrNW_004955424:11,961,994...11,969,610 		JBrowse link
G Yrdc yrdC N6-threonylcarbamoyltransferase domain containing involved_in ISO (PMID:29760464), (PMID:31481669), (PMID:34545459) UniProt PMID:29760464 PMID:31481669 PMID:34545459 NCBI chrNW_004955452:15,575,421...15,579,186
Ensembl chrNW_004955452:15,575,421...15,579,186 		JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) UniProt PMID:27214402 PMID:27356879 PMID:27497299 NCBI chrNW_004955407:3,322,246...3,397,289
Ensembl chrNW_004955407:3,342,876...3,397,150 		JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) UniProt PMID:27497299 NCBI chrNW_004955438:1,531,114...1,556,483
Ensembl chrNW_004955438:1,531,114...1,556,481 		JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO (PMID:21285950)
(MGI:5607402|PMID:20583019)
(PMID:31079898)		 UniProt PMID:20583019 PMID:21285950 PMID:31079898 MGI:5607402 NCBI chrNW_004955412:9,875,905...9,923,728 JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 involved_in ISO (MGI:5506828|PMID:23717213) UniProt PMID:23717213 MGI:5506828 NCBI chrNW_004955419:18,035,197...18,097,681
Ensembl chrNW_004955419:18,038,507...18,095,894 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in ISO (PMID:29415125) UniProt PMID:29415125 NCBI chrNW_004955403:50,565,496...50,635,226
Ensembl chrNW_004955403:50,565,583...50,637,294 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811) UniProt PMID:19017811 NCBI chrNW_004955445:7,470,030...7,472,323
Ensembl chrNW_004955445:7,470,888...7,472,267 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within ISO (PMID:14522080) MGI PMID:14522080 NCBI chrNW_004955493:8,636,093...8,655,090
Ensembl chrNW_004955493:8,636,110...8,649,721 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) UniProt PMID:19017811 NCBI chrNW_004955570:876,487...894,045
Ensembl chrNW_004955570:876,487...894,045 		JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 involved_in ISO (PMID:20354154), (PMID:34241577)
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)		 ComplexPortal
UniProt		 PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 MGI:3850292 MGI:7565917 NCBI chrNW_004955495:1,851,861...1,857,599
Ensembl chrNW_004955495:1,851,995...1,857,527 		JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 involved_in ISO (PMID:20354154), (PMID:34241577)
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)		 UniProt PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 MGI:3850292 MGI:7565917 NCBI chrNW_004955427:14,139,024...14,169,402
Ensembl chrNW_004955427:14,138,161...14,171,709 		JBrowse link
wobble position ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:32558197) UniProt PMID:32558197 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISO (PMID:32558197) UniProt PMID:32558197 NCBI chrNW_004955532:1,029,857...1,039,020
Ensembl chrNW_004955532:1,028,466...1,039,020 		JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tyw5 tRNA-yW synthesizing protein 5 involved_in ISO (PMID:20739293), (PMID:20972222) UniProt PMID:20739293 PMID:20972222 NCBI chrNW_004955403:1,326,027...1,351,039
Ensembl chrNW_004955403:1,326,029...1,345,563 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12321
    metabolic process 7441
      organic substance metabolic process 7123
        macromolecule metabolic process 5984
          macromolecule modification 1651
            RNA modification 100
              tRNA modification 60
                archaeosine-tRNA biosynthetic process 0
                charged-tRNA amino acid modification + 1
                cyclic threonylcarbamoyladenosine biosynthetic process 0
                mitochondrial tRNA modification + 8
                regulation of translational initiation by tRNA modification 1
                tRNA acetylation 0
                tRNA adenosine deamination to inosine 0
                tRNA dihydrouridine synthesis 4
                tRNA methylation + 25
                tRNA methylthiolation 2
                tRNA pseudouridine synthesis + 5
                tRNA seleno-modification 0
                tRNA thio-modification + 2
                tRNA threonylcarbamoyladenosine modification + 5
                tRNA wobble base modification + 8
                tRNA-guanine transglycosylation 2
                wybutosine biosynthetic process 1
Path 2
Term Annotations click to browse term
  biological_process 12321
    metabolic process 7441
      cellular metabolic process 6650
        cellular aromatic compound metabolic process 3915
          nucleobase-containing compound metabolic process 3724
            nucleic acid metabolic process 3358
              RNA metabolic process 2888
                ncRNA metabolic process 375
                  tRNA metabolic process 119
                    tRNA processing 88
                      tRNA modification 60
                        archaeosine-tRNA biosynthetic process 0
                        charged-tRNA amino acid modification + 1
                        cyclic threonylcarbamoyladenosine biosynthetic process 0
                        mitochondrial tRNA modification + 8
                        regulation of translational initiation by tRNA modification 1
                        tRNA acetylation 0
                        tRNA adenosine deamination to inosine 0
                        tRNA dihydrouridine synthesis 4
                        tRNA methylation + 25
                        tRNA methylthiolation 2
                        tRNA pseudouridine synthesis + 5
                        tRNA seleno-modification 0
                        tRNA thio-modification + 2
                        tRNA threonylcarbamoyladenosine modification + 5
                        tRNA wobble base modification + 8
                        tRNA-guanine transglycosylation 2
                        wybutosine biosynthetic process 1
paths to the root