Usp36 (ubiquitin specific peptidase 36) - Rat Genome Database

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Gene: Usp36 (ubiquitin specific peptidase 36) Chinchilla lanigera
Analyze
Symbol: Usp36
Name: ubiquitin specific peptidase 36
RGD ID: 9034323
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); histone H2B deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of macroautophagy (ortholog); nucleolus organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 36
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555063,824,556 - 3,862,098 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555063,824,598 - 3,861,919 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Usp36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555063,824,556 - 3,862,098 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555063,824,598 - 3,861,919 (+)NCBIChiLan1.0ChiLan1.0
USP36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,787,381 - 78,841,439 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,787,381 - 78,841,441 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,783,463 - 76,837,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361774,304,560 - 74,348,564 (-)NCBINCBI36Build 36hg18NCBI36
Build 341774,295,143 - 74,348,457NCBI
Celera1773,390,685 - 73,434,689 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1772,215,406 - 72,259,387 (-)NCBIHuRef
CHM1_11776,856,878 - 76,900,907 (-)NCBICHM1_1
T2T-CHM13v2.01779,682,181 - 79,736,241 (-)NCBIT2T-CHM13v2.0
Usp36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,150,477 - 118,181,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,150,477 - 118,181,070 (-)EnsemblGRCm39 Ensembl
GRCm3811118,259,651 - 118,290,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,259,651 - 118,290,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711118,120,967 - 118,151,558 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611118,075,743 - 118,105,500 (-)NCBIMGSCv36mm8
Celera11130,004,579 - 130,035,210 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.06NCBI
Usp36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,995,970 - 104,027,492 (-)NCBIGRCr8
mRatBN7.210103,497,349 - 103,528,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,497,349 - 103,528,877 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10108,597,760 - 108,629,288 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010108,060,891 - 108,092,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010103,418,070 - 103,449,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010107,292,828 - 107,324,355 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10107,292,828 - 107,324,355 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,927,771 - 106,959,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,264,874 - 108,296,384 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110108,281,139 - 108,310,782 (-)NCBI
Celera10102,057,521 - 102,089,067 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
USP36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,843,897 - 94,889,092 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,673,947 - 99,719,102 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,871,379 - 72,916,560 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11778,416,541 - 78,461,683 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1778,416,541 - 78,461,683 (-)Ensemblpanpan1.1panPan2
USP36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.192,547,316 - 2,587,360 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl92,550,452 - 2,585,108 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,204,251 - 3,244,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,198,025 - 3,238,153 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,198,174 - 3,237,961 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,221,527 - 3,261,605 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,346,088 - 3,386,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,427,024 - 3,467,073 (+)NCBIUU_Cfam_GSD_1.0
Usp36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,184,165 - 3,217,117 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365943,194,482 - 3,228,748 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365943,194,842 - 3,228,701 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,309,237 - 3,348,525 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,309,176 - 3,348,531 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2123,348,808 - 3,388,371 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP36
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,769,133 - 70,813,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,769,797 - 70,810,844 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,899,622 - 41,944,511 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248018,176,902 - 8,211,592 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248018,177,164 - 8,214,169 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018517   ⟹   ENSCLAP00000018337
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555063,824,556 - 3,862,098 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018518   ⟹   ENSCLAP00000018338
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555063,824,556 - 3,862,098 (+)Ensembl
RefSeq Acc Id: XM_005407366   ⟹   XP_005407423
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555063,824,598 - 3,861,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005407368   ⟹   XP_005407425
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555063,824,599 - 3,861,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005407369   ⟹   XP_005407426
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555063,824,598 - 3,861,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506110   ⟹   XP_013361564
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555063,824,598 - 3,861,919 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005407425   ⟸   XM_005407368
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VTX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005407426   ⟸   XM_005407369
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VTX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005407423   ⟸   XM_005407366
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VTX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361564   ⟸   XM_013506110
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000018337   ⟸   ENSCLAT00000018517
RefSeq Acc Id: ENSCLAP00000018338   ⟸   ENSCLAT00000018518
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012571 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018517 ENTREZGENE
  ENSCLAT00000018517.1 UniProtKB/TrEMBL
  ENSCLAT00000018518 ENTREZGENE
  ENSCLAT00000018518.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene Usp36 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 36 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A8C2VTX7 ENTREZGENE, UniProtKB/TrEMBL