Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide) - Rat Genome Database

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Gene: Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide) Chinchilla lanigera
Analyze
Symbol: Snrpd2
Name: small nuclear ribonucleoprotein D2 polypeptide
RGD ID: 8912037
Description: ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); systemic lupus erythematosus (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein D2 polypeptide 16.5kDa; small nuclear ribonucleoprotein Sm D2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574157,769 - 164,947 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574157,769 - 164,947 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574157,769 - 164,947 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574157,769 - 164,947 (-)NCBIChiLan1.0ChiLan1.0
SNRPD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,687,454 - 45,692,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,687,460 - 45,692,569 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,190,712 - 46,195,574 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,882,558 - 50,887,282 (-)NCBINCBI36Build 36hg18NCBI36
Build 341950,882,557 - 50,887,282NCBI
Celera1942,996,835 - 43,001,568 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,619,677 - 42,624,410 (-)NCBIHuRef
CHM1_11946,194,181 - 46,198,916 (-)NCBICHM1_1
T2T-CHM13v2.01948,514,991 - 48,519,856 (-)NCBIT2T-CHM13v2.0
Snrpd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,883,370 - 18,886,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,883,647 - 18,887,467 (+)EnsemblGRCm39 Ensembl
GRCm38719,149,445 - 19,152,734 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,149,722 - 19,153,542 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,735,187 - 19,738,075 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,308,360 - 18,311,248 (+)NCBIMGSCv36mm8
Celera716,561,189 - 16,564,077 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.46NCBI
Snrpd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,926,030 - 87,929,259 (+)NCBIGRCr8
mRatBN7.2178,798,377 - 78,801,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,798,377 - 78,803,351 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,187,409 - 84,190,259 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,745,052 - 92,747,904 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,942,511 - 85,945,361 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,057,140 - 80,059,990 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,056,755 - 80,059,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,324,033 - 81,326,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,509,142 - 78,511,992 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,264,040 - 73,266,890 (+)NCBICelera
Cytogenetic Map1q21NCBI
SNRPD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,849,077 - 51,853,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,720,533 - 53,725,113 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,692,963 - 42,697,512 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,230,822 - 51,235,661 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,230,822 - 51,235,661 (-)Ensemblpanpan1.1panPan2
SNRPD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,891,253 - 109,896,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,891,223 - 109,896,711 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,376,402 - 109,381,860 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,424,516 - 110,429,978 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11110,100,067 - 110,105,533 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,734,707 - 109,740,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,603,576 - 110,609,034 (+)NCBIUU_Cfam_GSD_1.0
Snrpd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,717,972 - 17,721,426 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,065,419 - 2,067,487 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,065,315 - 2,068,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,035,134 - 52,042,474 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,035,900 - 52,042,474 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNRPD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,127,974 - 39,134,771 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,127,877 - 39,134,626 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607318,755,632 - 18,760,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,488,674 - 7,495,306 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,488,259 - 7,495,305 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001265   ⟹   ENSCLAP00000001224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955574157,769 - 164,947 (-)Ensembl
RefSeq Acc Id: XM_005413802   ⟹   XP_005413859
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955574157,769 - 164,947 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413859 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001224
  ENSCLAP00000001224.1
  ENSCLAP00000001573.1
Reference Protein Sequences
RefSeq Acc Id: XP_005413859   ⟸   XM_005413802
- UniProtKB: A0A8C2UP69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001224   ⟸   ENSCLAT00000001265
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000931 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAG00000001183 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001265 ENTREZGENE
  ENSCLAT00000001265.1 UniProtKB/TrEMBL
  ENSCLAT00000001616.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Sm_D2 UniProtKB/TrEMBL
NCBI Gene Snrpd2 ENTREZGENE
PANTHER PTHR12777 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C2UJR5_CHILA UniProtKB/TrEMBL
  A0A8C2UP69 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Snrpd2  small nuclear ribonucleoprotein D2 polypeptide    small nuclear ribonucleoprotein D2 polypeptide 16.5kDa  Symbol and/or name change 5135510 APPROVED