Rtraf (RNA transcription, translation and transport factor) - Rat Genome Database

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Gene: Rtraf (RNA transcription, translation and transport factor) Chinchilla lanigera
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Symbol: Rtraf
Name: RNA transcription, translation and transport factor
RGD ID: 8880619
Description: ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN negative regulation of protein kinase activity (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); mitotic spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C14orf166; homeobox prox 1; LOC102012165; UPF0568 protein C14orf166 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540911,034,815 - 11,049,878 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540911,034,815 - 11,049,400 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Rtraf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540911,034,815 - 11,049,878 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540911,034,815 - 11,049,400 (-)NCBIChiLan1.0ChiLan1.0
RTRAF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381451,989,546 - 52,010,694 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1451,989,514 - 52,010,694 (+)EnsemblGRCh38hg38GRCh38
GRCh371452,456,264 - 52,477,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361451,525,943 - 51,541,158 (+)NCBINCBI36hg18NCBI36
Build 341451,525,942 - 51,667,191NCBI
Celera1432,323,222 - 32,338,419 (+)NCBI
Cytogenetic Map14q22.1NCBI
HuRef1432,616,898 - 32,632,090 (+)NCBIHuRef
CHM1_11452,394,686 - 52,409,879 (+)NCBICHM1_1
T2T-CHM13v2.01446,196,590 - 46,217,738 (+)NCBI
Rtraf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391419,861,470 - 19,873,891 (-)NCBIGRCm39mm39
GRCm39 Ensembl1419,861,419 - 19,873,892 (-)Ensembl
GRCm381419,811,402 - 19,823,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1419,811,351 - 19,823,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371420,630,624 - 20,643,045 (-)NCBIGRCm37mm9NCBIm37
MGSCv361418,602,098 - 18,614,519 (-)NCBImm8
Celera1416,194,399 - 16,206,819 (-)NCBICelera
Cytogenetic Map14A3NCBI
Rtraf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2154,447,243 - 4,457,973 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl154,442,573 - 4,457,972 (+)Ensembl
Rnor_6.0154,882,925 - 4,893,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,882,947 - 4,893,919 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,973,714 - 8,984,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,790,458 - 4,800,905 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1154,780,320 - 4,801,091 (+)NCBI
Celera15150,595 - 161,034 (-)NCBICelera
Cytogenetic Map15p16NCBI
RTRAF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11450,874,274 - 50,889,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1450,874,274 - 50,889,493 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01432,589,078 - 32,604,286 (+)NCBIMhudiblu_PPA_v0panPan3
RTRAF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1828,224,365 - 28,243,129 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha827,977,089 - 27,995,838 (+)NCBI
ROS_Cfam_1.0828,402,398 - 28,417,391 (+)NCBI
ROS_Cfam_1.0 Ensembl828,402,487 - 28,417,249 (+)Ensembl
UMICH_Zoey_3.1828,071,637 - 28,086,629 (+)NCBI
UNSW_CanFamBas_1.0828,132,425 - 28,147,419 (+)NCBI
UU_Cfam_GSD_1.0828,479,155 - 28,494,152 (+)NCBI
Rtraf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864060,441,127 - 60,456,119 (+)NCBI
SpeTri2.0NW_00493649513,735,580 - 13,750,554 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTRAF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1181,681,352 - 181,698,979 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11181,681,368 - 181,698,980 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21201,953,129 - 201,970,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RTRAF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,091,241 - 29,106,349 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605317,381,922 - 17,397,082 (+)NCBIVero_WHO_p1.0
Rtraf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473117,032,638 - 17,047,165 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015832   ⟹   ENSCLAP00000015670
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540911,034,815 - 11,049,878 (-)Ensembl
RefSeq Acc Id: XM_005376787   ⟹   XP_005376844
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540911,034,815 - 11,049,400 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376844 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAS59420 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005376844   ⟸   XM_005376787
- Sequence:
RefSeq Acc Id: ENSCLAP00000015670   ⟸   ENSCLAT00000015832


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010765 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000015670 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015832 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene LOC102012165 ENTREZGENE
UniProt A0A8C2VHG9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-22 Rtraf  RNA transcription, translation and transport factor  LOC102012165  chromosome unknown open reading frame, human C14orf166  Symbol and/or name change 5135510 APPROVED