Snrpe (small nuclear ribonucleoprotein polypeptide E) - Rat Genome Database

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Gene: Snrpe (small nuclear ribonucleoprotein polypeptide E) Chinchilla lanigera
Analyze
Symbol: Snrpe
Name: small nuclear ribonucleoprotein polypeptide E
RGD ID: 9037750
Description: ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein E
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,725,446 - 39,734,586 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,725,841 - 39,732,527 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,725,446 - 39,734,586 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,725,841 - 39,732,527 (+)NCBIChiLan1.0ChiLan1.0
SNRPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,861,599 - 203,871,152 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,861,599 - 203,871,152 (+)EnsemblGRCh38hg38GRCh38
GRCh371203,830,727 - 203,840,280 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,097,363 - 202,106,903 (+)NCBINCBI36Build 36hg18NCBI36
Build 341200,562,396 - 200,571,935NCBI
Celera1176,966,084 - 176,975,627 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,996,845 - 175,006,377 (+)NCBIHuRef
CHM1_11205,254,291 - 205,263,826 (+)NCBICHM1_1
T2T-CHM13v2.01203,125,550 - 203,135,078 (+)NCBIT2T-CHM13v2.0
Snrpe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,531,609 - 133,538,018 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,531,609 - 133,538,029 (-)EnsemblGRCm39 Ensembl
GRCm381133,603,871 - 133,610,280 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,603,871 - 133,610,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,500,448 - 135,506,857 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,431,428 - 135,437,809 (-)NCBIMGSCv36mm8
Celera1136,217,848 - 136,224,256 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.94NCBI
Snrpe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,596,324 - 47,609,390 (-)NCBIGRCr8
mRatBN7.21345,050,986 - 45,057,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,416,603 - 120,417,059 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1345,050,986 - 45,057,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,660,319 - 47,666,563 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,948,392 - 48,954,636 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,206,438 - 46,212,656 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,252,707 - 50,258,951 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,371,556 - 129,371,973 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,306,370 - 55,312,614 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,522,340 - 46,528,589 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1345,383,253 - 45,389,497 (-)NCBICelera
Cytogenetic Map13q13NCBI
SNRPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2145,504,989 - 45,513,980 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1145,469,792 - 45,478,724 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01179,466,263 - 179,474,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,755,378 - 183,764,937 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,755,392 - 183,764,937 (+)Ensemblpanpan1.1panPan2
SNRPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138515,808 - 521,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38515,860 - 521,535 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38611,256 - 616,960 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.038511,670 - 517,385 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl38511,699 - 518,346 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.138508,129 - 513,844 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.038898,470 - 904,186 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,112,955 - 1,118,678 (+)NCBIUU_Cfam_GSD_1.0
Snrpe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,614,687 - 71,620,608 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936567849,397 - 855,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936567849,300 - 855,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,560,523 - 64,567,007 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,560,544 - 64,567,007 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2970,909,058 - 70,915,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,474,620 - 25,483,427 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605526,249,119 - 26,257,943 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,079,090 - 7,087,215 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,079,944 - 7,086,973 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019652   ⟹   ENSCLAP00000019460
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,725,446 - 39,734,586 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019653   ⟹   ENSCLAP00000019461
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,725,922 - 39,732,304 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019654   ⟹   ENSCLAP00000019462
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,725,922 - 39,729,465 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019655   ⟹   ENSCLAP00000019463
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,726,209 - 39,729,389 (+)Ensembl
RefSeq Acc Id: XM_005375279   ⟹   XP_005375336
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,725,841 - 39,732,527 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375336 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019460
  ENSCLAP00000019460.1
  ENSCLAP00000019461.1
  ENSCLAP00000019462.1
  ENSCLAP00000019463.1
  ENSCLAP00000021463.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375336   ⟸   XM_005375279
- UniProtKB: A0A8C2VYU9 (UniProtKB/TrEMBL),   A0A8C2VW32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019462   ⟸   ENSCLAT00000019654
RefSeq Acc Id: ENSCLAP00000019463   ⟸   ENSCLAT00000019655
RefSeq Acc Id: ENSCLAP00000019461   ⟸   ENSCLAT00000019653
RefSeq Acc Id: ENSCLAP00000019460   ⟸   ENSCLAT00000019652
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013355 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAG00000014699 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019652 ENTREZGENE
  ENSCLAT00000019652.1 UniProtKB/TrEMBL
  ENSCLAT00000019653.1 UniProtKB/TrEMBL
  ENSCLAT00000019654.1 UniProtKB/TrEMBL
  ENSCLAT00000019655.1 UniProtKB/TrEMBL
  ENSCLAT00000021666.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  snRNP-E UniProtKB/TrEMBL
NCBI Gene Snrpe ENTREZGENE
PANTHER PTHR11193 UniProtKB/TrEMBL
  SM PROTEIN E UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN E UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN E UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C2VTL7_CHILA UniProtKB/TrEMBL
  A0A8C2VVK7_CHILA UniProtKB/TrEMBL
  A0A8C2VW32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VYF6_CHILA UniProtKB/TrEMBL
  A0A8C2VYU9 ENTREZGENE, UniProtKB/TrEMBL