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Gene: Scaf4 (SR-related CTD associated factor 4) Chinchilla lanigera

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Symbol:

Scaf4

Name:

SR-related CTD associated factor 4

RGD ID:

8954454

Description:

ENCODES a protein that exhibits RNA binding (ortholog); RNA polymerase II C-terminal domain phosphoserine binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

splicing factor, arginine/serine-rich 15; SR-related CTD-associated factor 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	31,270,035 - 31,303,823 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	31,269,673 - 31,303,823 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scaf4	Chinchilla	amyotrophic lateral sclerosis type 1		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Amyotrophic lateral sclerosis type 1	ClinVar	PMID:16435343 more ...
Scaf4	Chinchilla	autosomal dominant intellectual developmental disorder 7		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: DYRK1A-related intellectual disability syndrome	ClinVar	PMID:17237124 more ...
Scaf4	Chinchilla	developmental and epileptic encephalopathy 11		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Complex neurodevelopmental disorder	ClinVar	PMID:25741868 and PMID:32730804
Scaf4	Chinchilla	Familial Platelet Disorder with Associated Myeloid Malignancy		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1	ClinVar	PMID:17237124 more ...
Scaf4	Chinchilla	FLIEDNER-ZWEIER SYNDROME		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Scaf4	Chinchilla	genetic disease		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868 more ...
Scaf4	Chinchilla	immunodeficiency 28		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency 28	ClinVar	PMID:17237124 more ...
Scaf4	Chinchilla	intellectual disability		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar	PMID:25741868
Scaf4	Chinchilla	Multicystic Dysplastic Kidney		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Multicystic dysplastic kidney	ClinVar
Scaf4	Chinchilla	neurodevelopmental disorder with dysmorphic facies and distal limb anomalies		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies	ClinVar	PMID:25741868
Scaf4	Chinchilla	Neurodevelopmental Disorders		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 and PMID:32730804
Scaf4	Chinchilla	Parkinson's disease 20		ISO	SCAF4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early-onset Parkinson disease 20	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scaf4	Chinchilla	FLIEDNER-ZWEIER SYNDROME		ISO	SCAF4 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scaf4	Chinchilla	mRNA processing		ISO	Scaf4 (Rattus norvegicus)	9068941		RGD	PMID:8692929 and REF_RGD_ID:1299392
Scaf4	Chinchilla	negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled	involved_in	ISO	SCAF4 (Homo sapiens)	9068941	PMID:31104839	UniProt	PMID:31104839

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scaf4	Chinchilla	nucleoplasm	located_in	ISO	SCAF4 (Homo sapiens)	9068941		HPA	GO_REF:0000052
Scaf4	Chinchilla	nucleus	located_in	ISO	SCAF4 (Homo sapiens)	9068941	PMID:31104839	UniProt	PMID:31104839

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scaf4	Chinchilla	protein binding		ISO	Polr2a (Mus musculus)	9068941	protein C-terminus binding	RGD	PMID:8692929 and REF_RGD_ID:1299392
Scaf4	Chinchilla	RNA binding	enables	ISO	SCAF4 (Homo sapiens)	9068941	PMID:31104839	UniProt	PMID:31104839
Scaf4	Chinchilla	RNA polymerase II C-terminal domain phosphoserine binding	enables	ISO	SCAF4 (Homo sapiens)	9068941	PMID:31104839	UniProt	PMID:31104839

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074	PMID:30032202

Scaf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	31,270,035 - 31,303,823 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	31,269,673 - 31,303,823 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCAF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	31,671,000 - 31,732,118 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	31,671,000 - 31,732,118 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	33,043,313 - 33,104,431 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	31,965,416 - 32,026,133 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	21	18,226,630 - 18,287,746 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	18,453,341 - 18,514,530 (-)	NCBI		HuRef
CHM1_1	21	32,605,296 - 32,666,386 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	30,038,984 - 30,100,110 (-)	NCBI		T2T-CHM13v2.0

Scaf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,021,504 - 90,082,074 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,022,568 - 90,081,391 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	90,228,950 - 90,286,140 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	90,225,680 - 90,284,503 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	90,229,384 - 90,284,670 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,229,384 - 90,284,670 (-)	NCBI		MGSCv36	mm8
Celera	16	90,424,774 - 90,479,985 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	51.57	NCBI

Scaf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	42,951,254 - 43,007,293 (-)	NCBI		GRCr8
mRatBN7.2	11	29,460,479 - 29,521,153 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	29,465,106 - 29,521,153 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	38,153,091 - 38,209,037 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	30,824,482 - 30,880,426 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,013,841 - 30,069,810 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	30,371,713 - 30,428,073 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	30,371,713 - 30,428,073 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	33,987,199 - 34,047,580 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	29,751,872 - 29,807,911 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	29,751,869 - 29,807,911 (+)	NCBI
Celera	11	29,152,167 - 29,208,170 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

SCAF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	27,790,329 - 27,852,175 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	22,649,978 - 22,711,795 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	18,039,507 - 18,101,700 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	31,421,160 - 31,482,543 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	31,421,160 - 31,482,543 (-)	Ensembl	panpan1.1		panPan2

SCAF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	26,546,801 - 26,583,040 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	26,547,108 - 26,636,811 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	26,538,227 - 26,597,009 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	26,665,041 - 26,723,881 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	26,665,575 - 26,756,253 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	26,610,942 - 26,669,751 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	26,622,773 - 26,681,555 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	27,129,000 - 27,187,809 (-)	NCBI		UU_Cfam_GSD_1.0

Scaf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	27,123,792 - 27,168,322 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	10,307,835 - 10,342,588 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	10,307,868 - 10,342,952 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCAF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	195,333,260 - 195,396,204 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	195,335,178 - 195,396,246 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	205,632,094 - 205,690,676 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCAF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	60,397,173 - 60,459,295 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	60,397,233 - 60,458,553 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	2,938,854 - 3,002,480 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scaf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	20,040,770 - 20,097,835 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	20,040,416 - 20,097,764 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013504099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01007645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01044750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01185429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000009144 ⟹ ENSCLAP00000009016

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955407	31,270,035 - 31,303,823 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000009145 ⟹ ENSCLAP00000009017

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955407	31,270,035 - 31,303,811 (-)	Ensembl

RefSeq Acc Id:

XM_013504099 ⟹ XP_013359553

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955407	31,269,673 - 31,303,823 (-)	NCBI

Sequence:

show sequence

CTGCCGCCGCCGCCGCCGCCGCCTCCTTTTCCTCGCCCAGCGAACGGCACTGAGGAGCCCGCCACCCCTCCGCCTCTGCCTGCGCTCGGCCGCCTGCCTCGCCGTCTCGGCCGCAGCCCCTTCCTGCC
CGGCCTCGGGCTCCGCCGCTCGTCGCCTTCCCCGCCCAGGCCCGGCCGGTTCCCTGCCCTGCTCCTCCGCGGCGCGAGGTCTATGTGAGCGGCGGGCCGGGAGCCGCCGCCGCAGCGCGAACATGGAC
GCCGTCAACGCCTTCAACCAAGAGCTCTTTTCACTTATGGATATGAAACCTCCCATCTCGAGAGCCAAGATGATTCTCATCACTAAAGCTGCTATTAAAGCTATTAAGCTTTATAAGCATGTAGTTCA
AATAGTAGAAAAATTCATCAAAAAGTGTAAACCAGAATACAAGGTCCCAGGATTATATGTAATTGACTCAATTGTGCGACAGTCTCGTCATCAGTTTGGGACTGATAAAGATGTTTTTGGGCCAAGAT
TCTCTAAAAACATAACTGCCACATTCCAATATTTGTATCTTTGTCCATCTGAAGATAAGAGTAAAATAGTTCGTGTGCTGAACCTTTGGCAAAAAAATGGAGTGTTCAAAATTGAAATTATTCAACCA
CTTTTGGACATGGCAGCAGGAACCAGTAATGCCGCCCCATTAGCAGAAAATGTCACCAATAATGAAGGCTCACCTCCACCTCCAGTAAAAATTTCTTCTGAACCTCCACAAGCCACTCCGAACTCCAT
ACCCACTGTACCACAGTTACCCAGCTCTGATGCTTTTGCTGCTGTGGCTCAACTGTTTCAGACAACTCAAGGCCAGCAGCTTCAGCAGATCCTTCAGACTTTTCAACAACCTCCAAAACCACAGTCTC
CCGCCCTTGACAATGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAACCACCTGAACAAAAAGCTGCTTTCCCCCCACCTGAACAAAAAACTGCATTTGACAAG
AAGCTGCTTGATAGATTTGACTATGATGATGAGCCAGAAGCTGTGGAAGAATCAAAAAAAGAGGATACTGCTGCCATTATCCCCACAGCGCCTGTAGCTGCTGCTGCTACTACTGCTGCAGCACCACC
TCCGGTGCCTGCTGTGGCCACGCCTGCCCCCACTGCTGCCACTGCGCCTGCTGCGCCTGCTGCTGCCTCTCCTCCTCCTCCACAGACACCATTTGGGTTTCCTGGAGATGGCATGCAGCAGCCAACAT
ACACACAGCATCAAAATATGGATCAGTTTCAGCCTCGAATGATGGGAATACAAGATCCCATGCACCACCAGGTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGACTTCTTCCCACACCTCCA
TTTCCTCCCATGGCTCAGCCGGTGATTCCTCCAACTCCACCAATGCAGCAGACTTTCCAGCCCTCTTTTCAGCCACAGACCGAACCACTTACACAGAAGCCACATCAACAGGAGATGGAAGTGGAACA
ACCTTGTATTCCAGAAGTTAAGCGGCATATGTCTGATAACAGAAAGTCAAGATCTAGGTCAGCATCCAGGTCACCAAAGAGGAGACGATCAAGATCCGGTTCTAGATCCCGGAGATCTCGTCACCGAC
GTTCTCGATCTCGGTCCAGAGATAGACGTAGACATTCTCCTCGATCTCGTTCCCAAGAAAGACGGGATCGAGAGAAAGAGAGGGAACGTCGACAAAAAGGCCTTCCTCAAATCAAACCAGAAACTGCA
AGTGTTTGTAGTACTACTCTCTGGGTGGGACAGCTGGACAAAAGGACTACTCAGCAGGATGTTGCAAGTCTCTTGGAAGAGTTTGGTCCCATTGAATCAATCAATATGATTCCTCCGAGAGGTTGTGC
CTATATCGTTATGGTTCATAGGCAAGATGCTTATCGTGCCCTGCAGAAACTGAGCCGAGGAAACTATAAAGTGAATCAGAAGTCCATAAAGATTGCCTGGGCCTTAAACAAAGGAATAAAAGCAGATT
ATAAACAGTATTGGGATGTAGAACTTGGTGTTACTTATATTCCATGGGACAAAGTCAAACCTGAGGAACTGGAGAGTTTCTGTGAAGGAGGAATGTTGGACAGTGATACACTTAACCCAGATTGGAAA
GGAATTCCCAAGAAGCCTGAAAATGATGTTGCTCAAAATGGAGGCGCAGAAAGCTCACACACAGAGCCAGTGTCGCCCATACCTAACCCTTTACCCGTGCCTGTCCCGCCTGCTCCTGTTCCTGCACC
TATGACGGTGCCACCTCCACAGGTCCCACCACATCAGCCAGGTCCTCCTGTAGTTGGTGCCCTCCAGCCACCTGCTTTCACGCCGCCCTTGGGAATTCCTCCCCCAGGCTTTGGGCCTGGTGTTCCTC
CTCCTCCTCCCCCTCCACCGTTTTTGCGCCCAGGATTCAACCCAATGCACTTGCCACCAGGGTTTCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCGGTATCCATTCCTCCTCCTCACACTCCA
CCAATAAGCATCCCAAACTCTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTGGTGACAGTGC
GAAAATGTATGGCTCTGCTGTGCCACCTGCTGCACCCACGAATCTGCCTACCCCTCCTGTAACCCAGCCTGTTTCACTTCTTGGTACTCAGGGAGTTGCACCTGGTCCTGTGATTGGGTTGCAGGCAC
CATCAACTGGTCTTCTTGGTGCCCGACCTGGCCTCATCCCGCTTCAGCGCCCTCCAGGAATGCCTCCCCCTCACTTACAGCGGTTCCCTATGATGCCACCGCGCCCTATGCCACCACACATGATGCAC
AGAGGACCGCCACCAGGACCAGGGGGCTTTGCCATGCCACCACCTCATGGAATGAAAGGGCCCTTTCCTCCACATGGGCCCTTTGTCAGGCCTGGTGGAATGCCAGGGCTTGGAGGCCCCGGCCCAGG
CCCCGGGGGTCCTGAAGACAGAGATGGAAGGCAGCAGCCGCAGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCCGCAGCCGCAGTCACAGCAGCCGCCTCCACCACAGCCACAGCAGC
CACCTCCTTCACAGCAGCCGCCACCGGCTCAGCAGCAGCCACAGCCGTTTAGAAACGATAACAGGCAGCAGTTCAATTCAGGTAGAGACCAAGAAAGGTTCGGAAGAAGATCTTTCGGAAATAGGGTG
GAAAATGACCGGGAACGGTATGGCAACCGTAATGATGATAGAGAGAATAGTACTCGTGAAAGGAGAGAGTGGGGAAGAAGAAGCCCTGAACGGGACAGGCACAGAGACTCGGAAGAGAGAAACAGACG
CTCTAGTGGGCATCGAGACAGAGATTCTAGAGATAGAGAGTCGCGTAGAGAGAAGGAAGAAGGCCGAGGAAAGGAGAAGCCCGAGGTGACAGACAGGGCCGGTGGGAACAAAGCCACTGAACCGCCCC
TTAGCCGAGTGGGCAATGTAGACACTGTTTCAGAACTGGAAAAGGGGGAGGCGGAGGCCACTGTGGTGAAACCTCCTGAAGAGTCACCTGCTGAGGCTACCTCATCCCTTGAACCCGAAAAGGAGTCT
GGCTCAGCAGCGGAGGCTCCTCGCTAGAGACTGCAACTTGTCCTGATGTGACAGTGACACTTCCTCCCGGAGTGTAGAGCTTGAGGTGTACAGATGCTGTATTATATTTGCTCCCGCTATATCACAGC
CCCACAGTAGTTGGTGGGGAATTGTAAGCAATTTGATTGCTTTCCTTCTATTTAAGAATAGCTACAAAATAACAAAAAATACTGAAATATGAATAAATACTACCCTTTTTGCTGTAACTTTTTAAAAG
TTTTGACTTTAAAAAGTTTACAAATCGTAATTAGAAGTGCTCTCTATTTTTTTTTTAATTTAAGACAAGGTAACGGTGAAAGCTCCTCAAAACAATAGGGATGTTTTTAATAAACTCTATTTTCGTAA
CAAAC

hide sequence


Protein RefSeqs	XP_013359553	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009016
	ENSCLAP00000009016.1
	ENSCLAP00000009017.1

RefSeq Acc Id:

XP_013359553 ⟸ XM_013504099

- UniProtKB:

A0A8C2V2V8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEII
QPLLDMAAGTSNAAPLAENVTNNEGSPPPPVKISSEPPQATPNSIPTVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAF
DKKLLDRFDYDDEPEAVEESKKEDTAAIIPTAPVAAAATTAAAPPPVPAVATPAPTAATAPAAPAAASPPPPQTPFGFPGDGMQQPTYTQHQNMDQFQPRMMGIQDPMHHQVPLPPNGQMPGFGLLPT
PPFPPMAQPVIPPTPPMQQTFQPSFQPQTEPLTQKPHQQEMEVEQPCIPEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKPE
TASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPD
WKGIPKKPENDVAQNGGAESSHTEPVSPIPNPLPVPVPPAPVPAPMTVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPH
TPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPMMPPRPMPPHM
MHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPQPPQQQQQQQQQPQPQPQSQQPPPPQPQQPPPSQQPPPAQQQPQPFRNDNRQQFNSGRDQERFGRRSFGN
RVENDRERYGNRNDDRENSTRERREWGRRSPERDRHRDSEERNRRSSGHRDRDSRDRESRREKEEGRGKEKPEVTDRAGGNKATEPPLSRVGNVDTVSELEKGEAEATVVKPPEESPAEATSSLEPEK
ESGSAAEAPR

hide sequence

Ensembl Acc Id:

ENSCLAP00000009016 ⟸ ENSCLAT00000009144

Ensembl Acc Id:

ENSCLAP00000009017 ⟸ ENSCLAT00000009145

Protein Domains

CID RRM

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006298	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009144	ENTREZGENE
	ENSCLAT00000009144.1	UniProtKB/TrEMBL
	ENSCLAT00000009145.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.90	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
InterPro	CID_dom	UniProtKB/TrEMBL
	ENTH_VHS	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	SCAF4_RRM	UniProtKB/TrEMBL
	SR-CTD_assoc_factor	UniProtKB/TrEMBL
NCBI Gene	Scaf4	ENTREZGENE
PANTHER	RNA PROCESSING PROTEIN LD23810P	UniProtKB/TrEMBL
	SR-RELATED AND CTD-ASSOCIATED FACTOR 4	UniProtKB/TrEMBL
Pfam	CID	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PROSITE	CID	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
SMART	RPR	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48464	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8C2V2V8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V5A4_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Scaf4	SR-related CTD associated factor 4		SR-related CTD-associated factor 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM