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Gene: SCAF4 (SR-related CTD associated factor 4) Homo sapiens
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Symbol: SCAF4
Name: SR-related CTD associated factor 4
RGD ID: 1317892
Description: Exhibits RNA binding activity and RNA polymerase II C-terminal domain phosphoserine binding activity. Involved in negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled. Localizes to nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CTD-binding SR-like protein rA4; DKFZp434E098; FLJ23364; KIAA1172; pre-mRNA splicing SR protein rA4; SFRS15; splicing factor serine alanine 15; splicing factor, arginine/serine-rich 15; SR-like CTD-associated factor 4; SR-related and CTD-associated factor 4; SR-related CTD-associated factor 4; SRA4
Orthologs:
Mus musculus (house mouse) : Scaf4 (SR-related CTD-associated factor 4)  MGI  Alliance
Rattus norvegicus (Norway rat) : Scaf4 (SR-related CTD-associated factor 4)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scaf4 (SR-related CTD associated factor 4)
Pan paniscus (bonobo/pygmy chimpanzee) : SCAF4 (SR-related CTD associated factor 4)
Canis lupus familiaris (dog) : SCAF4 (SR-related CTD associated factor 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scaf4 (SR-related CTD associated factor 4)
Sus scrofa (pig) : SCAF4 (SR-related CTD associated factor 4)
Chlorocebus sabaeus (African green monkey) : SCAF4 (SR-related CTD associated factor 4)
Heterocephalus glaber (naked mole-rat) : Scaf4 (SR-related CTD associated factor 4)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2131,671,000 - 31,732,118 (-)EnsemblGRCh38hg38GRCh38
GRCh382131,668,987 - 31,732,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372133,043,313 - 33,104,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362131,965,416 - 32,026,133 (-)NCBINCBI36hg18NCBI36
Celera2118,226,630 - 18,287,746 (-)NCBI
Cytogenetic Map21q22.11NCBI
HuRef2118,453,341 - 18,514,530 (-)NCBIHuRef
CHM1_12132,605,296 - 32,666,386 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Promoters
Clinical Variants

Additional Information

External Database Links
Nomenclature History
 
More on SCAF4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1317892
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2020-10-06
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.