Zbtb8os (zinc finger and BTB domain containing 8 opposite strand) - Rat Genome Database

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Gene: Zbtb8os (zinc finger and BTB domain containing 8 opposite strand) Chinchilla lanigera
Analyze
Symbol: Zbtb8os
Name: zinc finger and BTB domain containing 8 opposite strand
RGD ID: 8996869
Description: INVOLVED IN tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN tRNA-splicing ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,944,281 - 10,955,631 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,944,281 - 10,955,250 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Zbtb8os
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,944,281 - 10,955,631 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,944,281 - 10,955,250 (-)NCBIChiLan1.0ChiLan1.0
ZBTB8OS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,620,820 - 32,650,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl132,600,172 - 32,650,903 (-)EnsemblGRCh38hg38GRCh38
GRCh37133,086,421 - 33,116,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,859,892 - 32,888,772 (-)NCBINCBI36hg18NCBI36
Celera131,355,962 - 31,384,864 (-)NCBI
Cytogenetic Map1p35.1NCBI
HuRef131,202,105 - 31,231,370 (-)NCBIHuRef
CHM1_1133,202,694 - 33,231,598 (-)NCBICHM1_1
T2T-CHM13v2.0132,479,596 - 32,510,712 (-)NCBI
Zbtb8os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,229,325 - 129,243,664 (+)NCBIGRCm39mm39
GRCm39 Ensembl4129,229,488 - 129,248,340 (+)Ensembl
GRCm384129,335,532 - 129,349,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,335,695 - 129,354,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv374129,013,270 - 129,024,273 (+)NCBIGRCm37mm9NCBIm37
MGSCv364128,838,330 - 128,849,333 (+)NCBImm8
Celera4127,676,765 - 127,687,761 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
Zbtb8os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25141,675,502 - 141,687,148 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5141,675,857 - 141,688,660 (+)Ensembl
Rnor_6.05147,535,584 - 147,547,252 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,535,525 - 147,547,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,256,894 - 151,268,651 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,492,643 - 148,504,132 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5140,154,326 - 140,165,545 (+)NCBICelera
Cytogenetic Map5q36NCBI
ZBTB8OS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1133,081,560 - 33,111,089 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl133,060,314 - 33,111,089 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0131,913,890 - 31,944,132 (-)NCBIMhudiblu_PPA_v0panPan3
ZBTB8OS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,660,419 - 68,684,336 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,660,975 - 68,682,440 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,243,216 - 65,266,585 (+)NCBI
ROS_Cfam_1.0269,228,351 - 69,251,750 (+)NCBI
ROS_Cfam_1.0 Ensembl269,228,977 - 69,249,629 (+)Ensembl
UMICH_Zoey_3.1266,065,285 - 66,088,623 (+)NCBI
UNSW_CanFamBas_1.0267,060,839 - 67,084,155 (+)NCBI
UU_Cfam_GSD_1.0268,054,541 - 68,077,887 (+)NCBI
Zbtb8os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,752,442 - 49,768,006 (-)NCBI
SpeTri2.0NW_00493647415,577,023 - 15,592,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB8OS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,970,645 - 88,986,589 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,970,973 - 88,986,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2683,010,429 - 83,019,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB8OS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120100,221,153 - 100,252,884 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20100,220,958 - 100,254,697 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603316,435,941 - 16,468,769 (-)NCBIVero_WHO_p1.0
Zbtb8os
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476415,785,203 - 15,799,952 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013850   ⟹   ENSCLAP00000013695
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545210,944,281 - 10,955,631 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000013851   ⟹   ENSCLAP00000013696
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545210,944,281 - 10,955,631 (-)Ensembl
RefSeq Acc Id: XM_005395081   ⟹   XP_005395138
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545210,944,281 - 10,955,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005395082   ⟹   XP_005395139
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545210,944,281 - 10,955,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519548   ⟹   XP_013375002
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545210,944,281 - 10,954,690 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395138 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395139 (Get FASTA)   NCBI Sequence Viewer  
  XP_013375002 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005395138   ⟸   XM_005395081
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005395139   ⟸   XM_005395082
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013375002   ⟸   XM_013519548
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000013696   ⟸   ENSCLAT00000013851
RefSeq Acc Id: ENSCLAP00000013695   ⟸   ENSCLAT00000013850


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009463 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000013695 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000013696 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013850 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000013851 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Zbtb8os ENTREZGENE
UniProt A0A8C2VDB2_CHILA UniProtKB/TrEMBL
  A0A8C2VJV0_CHILA UniProtKB/TrEMBL