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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA metabolic process
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Accession:GO:0016070 term browser browse the term
Definition:The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Synonyms:exact_synonym: RNA metabolism


show annotations for term's descendants           Sort by:
RNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx54 DEAD-box helicase 54 involved_in ISO (PMID:12466272) RGD PMID:12466272 NCBI chr12:35,934,713...35,949,956
Ensembl chr12:35,934,716...35,972,523 		JBrowse link
G Dxo decapping exoribonuclease involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,993,322...3,995,484
Ensembl chr20:3,993,327...3,995,494 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 TAS RGD PMID:3005291 RGD:68800 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Wdr74 WD repeat domain 74 acts_upstream_of_or_within ISO (MGI:5287298|PMID:21799883) RGD PMID:21799883 MGI:5287298 NCBI chr 1:205,631,769...205,636,563
Ensembl chr 1:205,631,824...205,636,563 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO UniProtKB:P40848 (MGI:71199|PMID:7885830) RGD PMID:7885830 MGI:71199 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Zc3h6 zinc finger CCCH type containing 6 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 3:116,203,466...116,254,186
Ensembl chr 3:116,204,197...116,253,282 		JBrowse link
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219
Ensembl chr 1:234,751,733...234,931,560 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS		 (PMID:26489465)
GO_REF:0000024		 RGD
UniProt		 PMID:26489465 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) RGD PMID:28297718 NCBI chr18:28,378,692...28,381,316
Ensembl chr18:28,378,692...28,381,316 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IMP RGD PMID:20805360 RGD:10042974 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO
ISS		 (PMID:16126846), (PMID:28275056)
GO_REF:0000024		 RGD
UniProt		 PMID:16126846 PMID:28275056 GO_REF:0000024 NCBI chr 9:1,862,555...1,872,301
Ensembl chr 9:1,862,899...1,872,451 		JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in IBA
ISO		 PMID:21873635
(MGI:6105829|PMID:27616329)
(PMID:29180010)		 RGD PMID:27616329 PMID:29180010 PMID:21873635 MGI:6105829, RGD:13792537 NCBI chr 5:166,805,309...166,813,339
Ensembl chr 5:166,804,837...166,813,155 		JBrowse link
G Qki QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) RGD PMID:20631256 MGI:5316962 NCBI chr 1:50,387,698...50,501,568
Ensembl chr 1:50,387,698...50,498,831 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) RGD PMID:24375645 NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482) RGD PMID:26000482 MGI:5706859 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839 		JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:28335005) RGD PMID:28335005 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) RGD PMID:23125361 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
IBA		 GO_REF:0000024
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5707103|PMID:26134560)
PMID:21873635
(PMID:19909337)		 UniProt
RGD		 PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 More... GO_REF:0000024 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5707103, RGD:13792537 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D involved_in ISO
IBA		 (MGI:5707103|PMID:26134560)
PMID:21873635		 RGD PMID:26134560 PMID:21873635 MGI:5707103, RGD:13792537 NCBI chr 1:2,313,110...2,348,820
Ensembl chr 1:2,314,324...2,348,819 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
IEA
ISS		 (PMID:11719186), (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:15766526), (PMID:20221403), (PMID:27193233), (PMID:9703499)
GO_REF:0000104
GO_REF:0000024
(MGI:5784976|PMID:22701344), (MGI:5788345|PMID:27193233), (MGI:5795824|PMID:17288565)		 RGD
UniProt		 PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 More... GO_REF:0000024 GO_REF:0000104 MGI:5784976 MGI:5788345 MGI:5795824 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4818820|PMID:20622884), (MGI:5779430|PMID:27102483), (MGI:5784967|PMID:24733888), (MGI:5784968|PMID:24700863), (MGI:5784976|PMID:22701344)
(PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)		 UniProt
RGD		 PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 More... GO_REF:0000024 MGI:4818820 MGI:5779430 MGI:5784967 MGI:5784968 MGI:5784976 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:25106868)
(MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)		 RGD PMID:20622884 PMID:22701344 PMID:25106868 MGI:4818820 MGI:5784976 NCBI chr 6:10,490,032...10,494,073
Ensembl chr 6:10,490,032...10,494,064 		JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in ISO
IBA		 (PMID:22547059)
PMID:21873635		 RGD PMID:22547059 PMID:21873635 RGD:13792537 NCBI chr13:102,509,111...102,529,501
Ensembl chr13:102,510,589...102,529,493 		JBrowse link
G Boll boule homolog, RNA binding protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:56,734,890...56,859,917
Ensembl chr 9:56,733,584...56,859,916 		JBrowse link
G Dazl deleted in azoospermia-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:10,695,572...10,712,443
Ensembl chr 9:10,695,592...10,712,323 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6105829|PMID:27616329)
(PMID:14517288), (PMID:19029303), (PMID:26489465), (PMID:29180010)		 UniProt
RGD		 PMID:14517288 PMID:19029303 PMID:26489465 PMID:27616329 PMID:29180010 GO_REF:0000024 MGI:6105829 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO
ISS		 (PMID:12034726)
GO_REF:0000024		 RGD
UniProt		 PMID:12034726 GO_REF:0000024 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO
IBA		 (MGI:5306322|PMID:12456657)
PMID:21873635		 RGD PMID:12456657 PMID:21873635 MGI:5306322, RGD:13792537 NCBI chr17:6,507,413...6,509,373
Ensembl chr17:6,507,275...6,509,375 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) RGD PMID:16010978 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) RGD PMID:14517288 PMID:15014438 PMID:20932473 NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor involved_in ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:11696543 RGD:10045987 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
G Rbm10 RNA binding motif protein 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367529|PMID:19508861)
GO_REF:0000107		 RGD
Ensembl		 PMID:19508861 GO_REF:0000107 MGI:4367529 NCBI chr  X:1,540,399...1,572,571
Ensembl chr  X:1,540,398...1,572,575 		JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) RGD PMID:17050675 NCBI chr 3:161,801,550...161,814,381
Ensembl chr 3:161,801,577...161,814,381 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in ISO (PMID:34160127)
(MGI:6859910|PMID:29844590)		 RGD PMID:29844590 PMID:34160127 MGI:6859910 NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431 		JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:17481916) RGD PMID:17481916 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Tirap TIR domain containing adaptor protein involved_in ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:33,531,724...33,548,508
Ensembl chr 8:33,531,725...33,547,432 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS		 (PMID:15014438)
GO_REF:0000024		 RGD
UniProt		 PMID:15014438 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
7-methylguanosine cap hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in ISO
IBA		 (PMID:16687569)
PMID:21873635		 RGD PMID:16687569 PMID:21873635 RGD:13792537 NCBI chr 5:16,524,864...16,558,399
Ensembl chr 5:16,524,874...16,558,399 		JBrowse link
7-methylguanosine mRNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
PMID:21873635
(PMID:20713356), (PMID:21310715)
GO_REF:0000104		 UniProt
RGD		 PMID:20713356 PMID:21310715 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in ISO
IBA		 (PMID:21310715)
PMID:21873635		 RGD PMID:21310715 PMID:21873635 RGD:13792537 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
IEA
ISS		 (PMID:12434151)
GO_REF:0000043
GO_REF:0000024		 RGD
UniProt		 PMID:12434151 GO_REF:0000024 GO_REF:0000043 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in ISO (PMID:22099306) RGD PMID:22099306 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO
IBA		 (PMID:9473487)
PMID:21873635		 RGD PMID:9473487 PMID:21873635 RGD:13792537 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase involved_in IBA
IEA
ISO
ISS		 PMID:21873635
GO_REF:0000107
GO_REF:0000043
(PMID:27422871), (PMID:9790902)
GO_REF:0000024		 Ensembl
UniProt
RGD		 PMID:9790902 PMID:27422871 PMID:21873635 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107, RGD:13792537 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775 		JBrowse link
7-methylguanosine RNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:16,524,864...16,558,399
Ensembl chr 5:16,524,874...16,558,399 		JBrowse link
adenosine to inosine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adad1 adenosine deaminase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:119,948,809...120,005,920
Ensembl chr 2:119,948,926...120,005,913 		JBrowse link
G Adad2 adenosine deaminase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:47,665,288...47,669,433
Ensembl chr19:47,665,309...47,669,436 		JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO
ISS		 PMID:21873635
GO_REF:0000107
MGI:3029789 (MGI:3027456|PMID:14615479)
(MGI:5447614|PMID:17369310)
GO_REF:0000024
(PMID:15858013), (PMID:16475990), (PMID:19651874), (PMID:21289159)		 Ensembl
RGD
UniProt		 PMID:14615479 PMID:15858013 PMID:16475990 PMID:17369310 PMID:19651874 More... GO_REF:0000024 GO_REF:0000107 MGI:3027456 MGI:5447614, RGD:13792537 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in
acts_upstream_of_or_within		 IDA
IEA
ISO
ISS
IBA		 GO_REF:0000107
(MGI:5447614|PMID:17369310)
MGI:4840554 (MGI:4831065|PMID:20826656)
(PMID:18178553), (PMID:21289159), (PMID:32220291)
GO_REF:0000024
PMID:21873635		 Ensembl
RGD
UniProt		 PMID:17369310 PMID:18178553 PMID:20826656 PMID:21289159 PMID:32220291 More... GO_REF:0000024 GO_REF:0000107 MGI:4831065 MGI:5447614, RGD:631737, RGD:13792537 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,750,437...62,300,984
Ensembl chr17:61,756,067...62,300,831 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5621227|PMID:25569111) RGD PMID:25569111 MGI:5621227 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001435.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:43,640,876...43,641,875 JBrowse link
G AABR07056845.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:37,066,520...37,067,514 JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO (MGI:3699439|PMID:17261272) RGD PMID:17261272 MGI:3699439 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:19720736) RGD PMID:19720736 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO
IBA		 (PMID:24275493), (PMID:24910439)
PMID:21873635
(MGI:5883203|PMID:24910439)		 RGD PMID:24275493 PMID:24910439 PMID:21873635 MGI:5883203, RGD:13792537 NCBI chr 7:111,091,127...111,109,353
Ensembl chr 7:111,089,445...111,109,193 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO
IBA		 (PMID:24275493), (PMID:24910439)
PMID:21873635
(MGI:5883203|PMID:24910439)		 RGD PMID:24275493 PMID:24910439 PMID:21873635 MGI:5883203, RGD:13792537 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28221134) RGD PMID:28221134 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO MGI:1924661 (MGI:5699497|PMID:26371508) RGD PMID:26371508 MGI:5699497 NCBI chr 5:24,427,611...24,482,157
Ensembl chr 5:24,428,717...24,482,062 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1917326 (MGI:5699497|PMID:26371508)		 Ensembl
RGD		 PMID:26371508 GO_REF:0000107 MGI:5699497 NCBI chr19:34,034,559...34,041,726
Ensembl chr19:34,034,559...34,041,726 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (MGI:3575934|PMID:15798186) RGD PMID:15798186 MGI:3575934 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in ISO (PMID:19874820) RGD PMID:19874820 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762 		JBrowse link
G Insr insulin receptor IEP RGD PMID:23633480 RGD:9685423 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Kdm1a lysine demethylase 1A IEP RGD PMID:20164337 RGD:9588288 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:3821939|PMID:19075228), (MGI:5009479|PMID:19720736) RGD PMID:19075228 PMID:19720736 MGI:3821939 MGI:5009479 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in ISO
IBA
ISS		 (PMID:23512658)
PMID:21873635
(MGI:5477858|PMID:23512658)
GO_REF:0000024		 RGD
UniProt		 PMID:23512658 PMID:21873635 GO_REF:0000024 MGI:5477858, RGD:13792537 NCBI chr  X:14,603,516...14,608,091
Ensembl chr  X:14,603,539...14,608,087 		JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:107,782,770...107,793,814
Ensembl chr 7:107,782,770...107,794,531 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 acts_upstream_of_or_within ISO MGI:6442563 (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in ISO
IBA		 (PMID:17589525)
PMID:21873635		 RGD PMID:17589525 PMID:21873635 RGD:13792537 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 PMID:21873635
GO_REF:0000002
(MGI:3575934|PMID:15798186)		 InterPro
RGD		 PMID:15798186 PMID:21873635 GO_REF:0000002 MGI:3575934, RGD:13792537 NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO
IBA		 (PMID:19874820)
PMID:21873635		 RGD PMID:19874820 PMID:21873635 RGD:13792537 NCBI chr 5:139,338,034...139,353,476
Ensembl chr 5:139,338,075...139,353,472 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:84585|PMID:8940107)		 Ensembl
RGD		 PMID:8940107 GO_REF:0000107 MGI:84585 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS		 (PMID:15728250)
PMID:15181151		 RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
G Smptb polypyrimidine tract-binding protein IDA RGD PMID:12578833 RGD:1299129 NCBI chr  X:16,609,016...16,610,898
Ensembl chr  X:16,606,597...16,610,874 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in IMP
IBA
ISO		 PMID:21873635
(PMID:8940107)		 RGD PMID:8940107 PMID:23462647 PMID:21873635 RGD:11038736, RGD:13792537 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22767602)		 UniProt
RGD		 PMID:22767602 GO_REF:0000024 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (MGI:6490747|PMID:33230114) RGD PMID:33230114 MGI:6490747 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
base conversion or substitution editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO (PMID:9020165) RGD PMID:9020165 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IDA
ISO		 (PMID:32220291) RGD PMID:32220291 PMID:10836790 RGD:10450892 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
box C/D RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:6400674|PMID:32017896)
(PMID:32017898)		 UniProt
Ensembl
RGD		 PMID:32017896 PMID:32017898 GO_REF:0000024 GO_REF:0000107 MGI:6400674 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865 		JBrowse link
box H/ACA RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
cap1 mRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in ISO
IBA
IEA
ISS		 (PMID:21310715)
PMID:21873635
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:21310715 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804 		JBrowse link
cap2 mRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr2 cap methyltransferase 2 involved_in ISO
IBA		 (PMID:21310715)
PMID:21873635		 RGD PMID:21310715 PMID:21873635 RGD:13792537 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191 		JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645 		JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in ISO
IEA
IBA
ISS		 (PMID:25288793)
GO_REF:0000107
PMID:21873635
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:25288793 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841 		JBrowse link
conversion of seryl-tRNAsec to selenocys-tRNAsec term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr14:58,311,484...58,341,745
Ensembl chr14:58,311,499...58,341,740 		JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csde1 cold shock domain containing E1 involved_in ISO
IEA		 (PMID:11051545)
GO_REF:0000107		 RGD
Ensembl		 PMID:11051545 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,790
Ensembl chr 2:190,554,980...190,582,784 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) RGD PMID:19029303 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO
IBA		 GO_REF:0000107
(PMID:19029303)
PMID:21873635		 Ensembl
RGD		 PMID:19029303 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19029303), (PMID:29476152)		 UniProt
RGD		 PMID:19029303 PMID:29476152 GO_REF:0000024 NCBI chr10:80,908,300...80,951,097
Ensembl chr10:80,908,076...80,951,129 		JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 involved_in ISO (PMID:29476152) RGD PMID:29476152 NCBI chr11:78,874,402...78,974,392
Ensembl chr11:78,874,414...78,974,377 		JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 involved_in ISO (PMID:29476152) RGD PMID:29476152 NCBI chr 4:78,060,494...78,195,007
Ensembl chr 4:78,060,494...78,194,865 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Paip1 poly(A) binding protein interacting protein 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 2:51,523,142...51,550,241
Ensembl chr 2:51,522,921...51,550,241 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in IBA
IEA
ISO		 PMID:21873635
GO_REF:0000107
(PMID:11051545), (PMID:19029303)		 Ensembl
RGD		 PMID:11051545 PMID:19029303 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19029303)		 UniProt
RGD		 PMID:19029303 GO_REF:0000024 NCBI chr 5:132,882,137...132,899,108
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO (PMID:19056938) RGD PMID:19056938 NCBI chr15:75,820,040...75,850,450
Ensembl chr15:75,823,436...75,850,642 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:19056938) RGD PMID:19056938 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in ISO
IBA		 (PMID:19056938)
PMID:21873635		 RGD PMID:19056938 PMID:21873635 RGD:13792537 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
cytidine to uridine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within		 IMP
ISO
IEA
TAS		 (MGI:6331191|PMID:30309881), (MGI:7387172|PMID:30844405)
(PMID:24916387), (PMID:30844405)
MGI:103298 (MGI:5613094|PMID:24916387)
GO_REF:0000107
PMID:12896982		 RGD
Ensembl		 PMID:24916387 PMID:30309881 PMID:30844405 PMID:10669759 PMID:12896982 GO_REF:0000107 MGI:5613094 MGI:6331191 MGI:7387172, RGD:9587747, RGD:8553404 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in
acts_upstream_of_or_within		 IDA
IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
(MGI:7387172|PMID:30844405)
(PMID:24916387), (PMID:30844405)
MGI:1917115|MGI:2157378|MGI:2384294 (MGI:2157316|PMID:8692961), (MGI:5613094|PMID:24916387)		 Ensembl
RGD		 PMID:8692961 PMID:24916387 PMID:30844405 PMID:12020819 PMID:21873635 GO_REF:0000107 MGI:2157316 MGI:5613094 MGI:7387172, RGD:625559, RGD:13792537 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:1340097|PMID:10403781)
PMID:21873635
(PMID:10403781)		 RGD PMID:10403781 PMID:21873635 MGI:1340097, RGD:13792537 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Rbm47 RNA binding motif protein 47 acts_upstream_of_or_within
involved_in		 ISO MGI:103298 (MGI:5613094|PMID:24916387)
(MGI:6331191|PMID:30309881), (MGI:7387172|PMID:30844405)
(PMID:24916387), (PMID:30844405)		 RGD PMID:24916387 PMID:30309881 PMID:30844405 MGI:5613094 MGI:6331191 MGI:7387172 NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431 		JBrowse link
cytoplasmic polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3610697|PMID:16314516)
GO_REF:0000107		 RGD
Ensembl		 PMID:16314516 GO_REF:0000107 MGI:3610697 NCBI chr 1:85,696,880...85,707,215
Ensembl chr 1:85,696,882...85,707,155 		JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3610697|PMID:16314516)
GO_REF:0000107		 RGD
Ensembl		 PMID:16314516 GO_REF:0000107 MGI:3610697 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:5437740 (MGI:5437387|PMID:22621333)
GO_REF:0000107		 RGD
Ensembl		 PMID:22621333 GO_REF:0000107 MGI:5437387 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997 		JBrowse link
G Papola poly (A) polymerase alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5004778|PMID:18084034)
GO_REF:0000107		 RGD
Ensembl		 PMID:18084034 GO_REF:0000107 MGI:5004778 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 acts_upstream_of_or_within
involved_in		 ISO MGI:109382 (MGI:3807625|PMID:18625844)
(PMID:31439799)		 RGD PMID:18625844 PMID:31439799 MGI:3807625 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Dcp1a decapping mRNA 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:5,656,788...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:152,358,267...152,395,747
Ensembl chr 4:152,358,241...152,397,145 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IBA
IEA		 PMID:21873635
GO_REF:0000104
GO_REF:0000002		 UniProt
InterPro		 PMID:21873635 GO_REF:0000002 GO_REF:0000104, RGD:13792537 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G LOC100912393 mRNA-decapping enzyme 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC103690064 m7GpppN-mRNA hydrolase-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO MGI:1298230 (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr 2:135,271,189...135,291,407
Ensembl chr 2:135,271,189...135,291,400 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr12:7,476,707...7,595,380
Ensembl chr12:7,476,697...7,599,204 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO
IEA
IBA
ISS		 (PMID:20584987), (PMID:20852261)
GO_REF:0000002
PMID:21873635
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:20584987 PMID:20852261 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857 		JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:109,072,958...109,087,425
Ensembl chr 3:109,075,290...109,083,253 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:33,415,666...33,465,365
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:5,656,788...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:152,358,267...152,395,747
Ensembl chr 4:152,358,241...152,397,145 		JBrowse link
G Edc3 enhancer of mRNA decapping 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,106,129...58,151,685
Ensembl chr 8:58,106,175...58,151,671 		JBrowse link
G Edc4 enhancer of mRNA decapping 4 involved_in IEA
IBA		 GO_REF:0000002
PMID:21873635		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr19:33,774,062...33,786,054
Ensembl chr19:33,774,055...33,787,758 		JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319 		JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in ISO (PMID:18995831) RGD PMID:18995831 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003 		JBrowse link
G Rnaseh1 ribonuclease H1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:45,282,849...45,292,258
Ensembl chr 6:45,282,854...45,292,236 		JBrowse link
G Rnaseh2a ribonuclease H2, subunit A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:23,186,325...23,196,045
Ensembl chr19:23,186,383...23,196,041 		JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319 		JBrowse link
DNA replication, synthesis of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B involved_in ISO (PMID:12181327) RGD PMID:12181327 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO
IEA
ISS		 (PMID:2175912), (PMID:27019227), (PMID:8026492)
(MGI:6478526|PMID:8026492)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:2175912 PMID:8026492 PMID:27019227 GO_REF:0000024 GO_REF:0000107 MGI:6478526 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in ISO
IEA		 (PMID:8026492)
GO_REF:0000107
(MGI:6478526|PMID:8026492)		 RGD
Ensembl		 PMID:8026492 GO_REF:0000107 MGI:6478526 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348 		JBrowse link
G Polrmt RNA polymerase mitochondrial involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791 		JBrowse link
G Prim1 DNA primase subunit 1 involved_in ISO (MGI:6478526|PMID:8026492)
(PMID:26975377), (PMID:8026492)		 RGD PMID:8026492 PMID:26975377 MGI:6478526 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526 		JBrowse link
G Prim2 DNA primase subunit 2 involved_in ISO
IBA
IEA		 (PMID:8026492)
PMID:21873635
(MGI:6478526|PMID:8026492)
GO_REF:0000043		 RGD
UniProt		 PMID:8026492 PMID:21873635 GO_REF:0000043 MGI:6478526, RGD:13792537 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565 		JBrowse link
DNA-templated transcription elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISO (PMID:10882741) RGD PMID:10882741 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak6 adenylate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:31,794,316...31,806,375
Ensembl chr 2:31,794,519...31,806,371
Ensembl chr20:31,794,519...31,806,371 		JBrowse link
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:132,034,380...132,081,296
Ensembl chr 6:132,037,272...132,081,278 		JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IDA RGD PMID:3306601 RGD:69897 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 involved_in ISO
IEA		 (PMID:10567404)
GO_REF:0000107		 RGD
Ensembl		 PMID:10567404 GO_REF:0000107 NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:50,053,289...50,070,514
Ensembl chr 6:50,053,289...50,070,514 		JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO (MGI:63283|PMID:8413268) RGD PMID:8413268 MGI:63283 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:9212049), (PMID:9603525) RGD PMID:9212049 PMID:9603525 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Taf9b TATA-box binding protein associated factor 9b involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:71,289,290...71,300,142
Ensembl chr  X:71,289,290...71,300,604 		JBrowse link
G Tbp TATA box binding protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tbpl2 TATA box binding protein-like 2 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:6,772,419...6,793,213
Ensembl chr 3:6,772,419...6,793,231 		JBrowse link
DNA-templated transcription open complex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO (PMID:14580349) RGD PMID:14580349 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
DNA-templated transcription termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G ENSRNOG00000063939 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr15:43,363,981...43,364,769 JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20550934)		 UniProt
RGD		 PMID:20550934 GO_REF:0000024 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584 		JBrowse link
G Polr2a RNA polymerase II subunit A involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Setx senataxin involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
ISO		 GO_REF:0000024
(PMID:26700805)		 UniProt
RGD		 PMID:26700805 GO_REF:0000024 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Wdr82 WD repeat domain 82 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:28,947,730...28,956,790
Ensembl chr17:28,947,734...28,956,788 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:34365507)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:34365507 GO_REF:0000024 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25219674)		 UniProt
RGD		 PMID:25219674 GO_REF:0000024
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,751,310...14,755,213
Ensembl chr10:14,751,384...14,755,207 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561 		JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
IEA
ISS		 (PMID:20065043)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20065043 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,978,785...34,031,025
Ensembl chr10:33,980,831...34,031,025 		JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO
IBA		 (PMID:20065043), (PMID:21336257)
PMID:21873635		 RGD PMID:20065043 PMID:21336257 PMID:21873635 RGD:13792537 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 involved_in ISO
IBA		 (PMID:20065043)
PMID:21873635		 RGD PMID:20065043 PMID:21873635 RGD:13792537 NCBI chr10:42,281,614...42,294,740
Ensembl chr10:42,281,722...42,294,730 		JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in ISO
IBA		 (PMID:11782436)
PMID:21873635		 RGD PMID:11782436 PMID:21873635 RGD:13792537 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265 		JBrowse link
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in ISO
IBA		 (PMID:11782436)
PMID:21873635		 RGD PMID:11782436 PMID:21873635 RGD:13792537 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:174,140,831...174,168,757
Ensembl chr 1:174,141,993...174,168,665 		JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,016,146...131,143,347
Ensembl chr 5:131,016,126...131,143,329 		JBrowse link
G Exosc10 exosome component 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RGD1560857 similar to RIKEN cDNA 2900016D05 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:21,108,807...21,109,887
Ensembl chr16:21,108,942...21,109,883 		JBrowse link
G Xab2 XPA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
G Yju2 YJU2 splicing factor involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:789,603...799,505
Ensembl chr 9:789,606...799,496 		JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979 		JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISS
ISO		 GO_REF:0000024
(PMID:18172165)		 UniProt
RGD		 PMID:18172165 GO_REF:0000024 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO
IBA		 (PMID:18172165)
PMID:21873635		 RGD PMID:18172165 PMID:21873635 RGD:13792537 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18172165)		 UniProt
Ensembl
RGD		 PMID:18172165 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISS
ISO		 GO_REF:0000024
(PMID:18172165)		 UniProt
RGD		 PMID:18172165 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 8:96,527,871...96,637,385
Ensembl chr 8:96,528,195...96,632,739 		JBrowse link
lncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691 		JBrowse link
maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr2i RNA polymerase II subunit I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952 		JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1d C1D nuclear receptor corepressor involved_in IBA
ISO		 PMID:21873635
(PMID:17412707)		 RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr14:91,660,951...91,673,177
Ensembl chr14:91,660,989...91,672,852 		JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17412707), (PMID:20368444) RGD PMID:17412707 PMID:20368444 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:20368444) RGD PMID:20368444 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687 		JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243 		JBrowse link
G Mphosph6 M phase phosphoprotein 6 involved_in ISO
IBA		 (PMID:17412707)
PMID:21873635		 RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr19:45,860,152...45,870,077
Ensembl chr19:45,860,154...45,870,170 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO
IBA		 (PMID:17412707)
PMID:21873635		 RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627 		JBrowse link
G Nol9 nucleolar protein 9 involved_in ISO (PMID:21063389) RGD PMID:21063389 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191 		JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370 		JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in ISO
IEA
ISS		 (PMID:16738141)
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:16738141 GO_REF:0000024 GO_REF:0000104 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO
IEA
IBA
ISS		 (PMID:16043514)
GO_REF:0000104
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:16043514 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 9:61,475,498...61,502,584
Ensembl chr 9:61,475,517...61,502,469 		JBrowse link
maturation of 5S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136 		JBrowse link
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007121.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:259,826,698...259,827,548 JBrowse link
G AABR07027819.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:43,254,214...43,255,377 JBrowse link
G AABR07029262.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:18,291,363...18,292,163 JBrowse link
G AABR07030630.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:93,364,092...93,364,568 JBrowse link
G AABR07045321.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:40,814,078...40,814,928 JBrowse link
G AABR07049918.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:139,195,914...139,196,714 JBrowse link
G AABR07052519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:57,334,747...57,335,597 JBrowse link
G AC128901.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:148,270,351...148,271,151 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401 		JBrowse link
G ENSRNOG00000067069 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:71,346,292...71,347,142 JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687 		JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758 		JBrowse link
G LOC103690888 60S ribosomal protein L10a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:104,902,239...104,902,979
Ensembl chr  X:104,902,239...104,902,892 		JBrowse link
G LOC108349606 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:4,172,029...4,172,931 JBrowse link
G LOC120097172 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:42,188,307...42,189,095
Ensembl chr15:42,188,259...42,189,095 		JBrowse link
G LOC680700 similar to ribosomal protein L10a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,578,540...134,579,373
Ensembl chr 5:134,578,565...134,579,341 		JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388 		JBrowse link
G RGD1560842 similar to Brix domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:134,287,529...134,288,901
Ensembl chr 6:134,287,818...134,288,702 		JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473 		JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rpl10a ribosomal protein L10A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:6,388,800...6,391,358
Ensembl chr20:6,385,823...6,391,357 		JBrowse link
G Rpl7a ribosomal protein L7A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,239,026...10,241,703
Ensembl chr 3:10,239,001...10,241,716 		JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370 		JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,424,868...4,436,753
Ensembl chr10:4,397,821...4,439,593 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872 		JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008724.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:70,904,506...70,905,278 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
IEA
IBA
ISS		 (PMID:17353269)
GO_REF:0000104
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:17353269 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G ENSRNOG00000064315 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:33,274,509...33,275,597 JBrowse link
G ENSRNOG00000067266 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:165,188,105...165,188,942 JBrowse link
G ENSRNOG00000070052 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:73,132,657...73,133,891 JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Gtpbp4 GTP binding protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5617283|PMID:25190460)
GO_REF:0000107		 RGD
Ensembl		 PMID:25190460 GO_REF:0000107 MGI:5617283 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009 		JBrowse link
G LOC103694242 60S ribosomal protein L7 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:32,995,281...32,996,164
Ensembl chr16:32,995,363...32,996,204 		JBrowse link
G LOC120093238 60S ribosomal protein L35-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,423,594...40,425,165
Ensembl chr 6:40,423,832...40,424,203 		JBrowse link
G LOC367050 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:30,634,173...30,634,690
Ensembl chr 8:30,634,325...30,634,690 		JBrowse link
G LOC686074 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,159,401...23,159,843
Ensembl chr18:23,159,441...23,159,812 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO
ISS		 PMID:21873635
GO_REF:0000104
(MGI:5617283|PMID:25190460)
(PMID:16738141), (PMID:17353269)
GO_REF:0000024		 UniProt
RGD		 PMID:16738141 PMID:17353269 PMID:25190460 PMID:21873635 GO_REF:0000024 GO_REF:0000104 MGI:5617283, RGD:13792537 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,746,996...69,782,656
Ensembl chr10:69,748,789...69,790,475 		JBrowse link
G Rbm34 RNA binding motif protein 34 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:54,936,516...54,956,810
Ensembl chr19:54,936,531...54,956,715 		JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509 		JBrowse link
G Rpl35 ribosomal protein L35 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Rpl35-ps8 ribosomal protein L35, pseudogene 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:18,099,852...18,100,291
Ensembl chr  X:18,099,866...18,100,291 		JBrowse link
G Rpl7 ribosomal protein L7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110 		JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000104
PMID:21873635
(PMID:16043514), (PMID:17353269)		 UniProt
RGD		 PMID:16043514 PMID:17353269 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 9:61,475,498...61,502,584
Ensembl chr 9:61,475,517...61,502,469 		JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475 		JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960 		JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx52 DExD-box helicase 52 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr10:68,824,594...68,847,400
Ensembl chr10:68,824,645...68,848,266 		JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758 		JBrowse link
G LOC100360750 Sm protein F-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484 		JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815 		JBrowse link
G Nol11 nucleolar protein 11 involved_in IBA
ISO		 PMID:21873635
(PMID:22916032)		 RGD PMID:22916032 PMID:21873635 RGD:13792537 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677 		JBrowse link
G Nop14 NOP14 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:76,081,318...76,102,454
Ensembl chr14:76,080,793...76,102,453 		JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473 		JBrowse link
G Riok1 RIO kinase 1 involved_in IBA
ISO		 PMID:21873635
(PMID:22072790)		 RGD PMID:22072790 PMID:21873635 RGD:13792537 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900 		JBrowse link
G Riok2 RIO kinase 2 involved_in ISO
IBA		 (PMID:19564402)
PMID:21873635		 RGD PMID:19564402 PMID:21873635 RGD:13792537 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512 		JBrowse link
G Riok3 RIO kinase 3 involved_in IBA
ISO		 PMID:21873635
(PMID:22418843)		 RGD PMID:22418843 PMID:21873635 RGD:13792537 NCBI chr18:3,327,776...3,353,350
Ensembl chr18:3,327,776...3,353,343 		JBrowse link
G Rps14 ribosomal protein S14 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508 		JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170 		JBrowse link
G Rps28-ps3 ribosomal protein S28, pseudogene 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:65,888,391...65,888,702
Ensembl chr16:65,888,416...65,888,625 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872 		JBrowse link
G Srfbp1 serum response factor binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:45,920,389...45,945,385
Ensembl chr18:45,920,446...45,942,515 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561 		JBrowse link
G Utp4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550 		JBrowse link
G Wdr3 WD repeat domain 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432 		JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3700849|PMID:17242206)		 Ensembl
RGD		 PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339 		JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142 		JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:58,051,700...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G LOC100363452 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:98,586,109...98,586,784
Ensembl chr 3:98,586,108...98,586,808 		JBrowse link
G LOC102548369 40S ribosomal protein S16-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:92,259,763...92,260,218
Ensembl chr15:92,259,763...92,260,203 		JBrowse link
G LOC297756 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:3,392,846...3,393,523
Ensembl chr 5:3,389,210...3,393,500 		JBrowse link
G Ngdn neuroguidin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654 		JBrowse link
G Nol10 nucleolar protein 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353 		JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640 		JBrowse link
G RGD1561137 similar to 40S ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,494,155...21,494,684
Ensembl chr 3:21,494,203...21,494,676 		JBrowse link
G RGD1566369 similar to ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:83,759,360...83,760,027
Ensembl chr17:83,759,369...83,760,019 		JBrowse link
G Rps16 ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508 		JBrowse link
G Rps8 ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268 		JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110 		JBrowse link
G Slx9 SLX9 ribosome biogenesis factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:11,114,632...11,147,532
Ensembl chr20:11,114,589...11,147,521 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
G Tsr2 TSR2, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:20,064,102...20,072,673
Ensembl chr  X:20,064,103...20,072,620 		JBrowse link
G Utp25 UTP25 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662 		JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396 		JBrowse link
G Utp4 UTP4 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550 		JBrowse link
G Utp6 UTP6 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:64,897,321...64,928,105
Ensembl chr10:64,897,328...64,927,997 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Wdr46 WD repeat domain 46 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,937,845...4,945,796
Ensembl chr20:4,937,847...4,946,535 		JBrowse link
methylguanosine-cap decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in ISO (PMID:12417715) RGD PMID:12417715 NCBI chr16:5,656,788...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISO (PMID:26049109) RGD PMID:26049109 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (PMID:31875550) RGD PMID:31875550 NCBI chr 9:98,741,627...98,755,039
Ensembl chr 9:98,742,360...98,755,039 		JBrowse link
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in IBA
ISO		 PMID:21873635
(MGI:5494337|PMID:23594738), (MGI:5603455|PMID:25119025)
(PMID:24141620)		 RGD PMID:23594738 PMID:24141620 PMID:25119025 PMID:21873635 MGI:5494337 MGI:5603455, RGD:13792537 NCBI chr 9:87,355,409...87,736,616
Ensembl chr 9:87,356,457...87,736,616 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:18951094), (PMID:19703396)
(MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307), (MGI:5294254|PMID:21962509)		 RGD PMID:18292307 PMID:18604195 PMID:18951094 PMID:19703396 PMID:21962509 MGI:4359358 MGI:4359360 MGI:5294254 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077 		JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in ISO
IEA		 (PMID:28546213)
GO_REF:0000107		 RGD
Ensembl		 PMID:28546213 GO_REF:0000107 NCBI chr 4:57,095,205...57,494,501
Ensembl chr 4:57,095,208...57,530,843 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO		 GO_REF:0000024
(PMID:22055188)		 UniProt
RGD		 PMID:22055188 GO_REF:0000024 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO MGI:3032487 (MGI:5495061|PMID:23622242) RGD PMID:23622242 MGI:5495061 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:19966796), (PMID:23661684)
MGI:3056454 (MGI:4462112|PMID:20424607)		 RGD PMID:19966796 PMID:20424607 PMID:23661684 MGI:4462112 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in
acts_upstream_of_or_within		 ISO (PMID:15973356), (PMID:23322395), (PMID:23661684), (PMID:26435691)
MGI:1926500|MGI:3589209|MGI:3589287|MGI:3622169 (MGI:3528782|PMID:15713842), (MGI:3588609|PMID:16040801), (MGI:3619610|PMID:16462742)
(MGI:4454581|PMID:20463238), (MGI:4830414|PMID:20805985), (MGI:5527004|PMID:24209619)		 RGD PMID:15713842 PMID:15973356 PMID:16040801 PMID:16462742 PMID:20463238 More... MGI:3528782 MGI:3588609 MGI:3619610 MGI:4454581 MGI:4830414 MGI:5527004 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G H19 H19 imprinted maternally expressed transcript involved_in ISO (PMID:31574452) RGD PMID:31574452 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134 		JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within_positive_effect ISO (MGI:6389306|PMID:31481660) RGD PMID:31481660 MGI:6389306 NCBI chr 2:57,201,310...57,252,918
Ensembl chr 2:57,201,272...57,254,148 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:23661684) RGD PMID:23661684 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in IBA
ISO		 PMID:21873635
(PMID:28431233)		 RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO
IBA		 (PMID:28431233)
PMID:21873635		 RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G Rbm3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (MGI:3530692|PMID:15684048) RGD PMID:15684048 MGI:3530692 NCBI chr  X:14,348,909...14,352,387
Ensembl chr  X:14,348,910...14,353,580 		JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in ISO
IBA
ISS		 (PMID:18632581)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:18632581 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:137,328,371...137,335,846
Ensembl chr 5:137,328,371...137,335,845 		JBrowse link
G Spout1 SPOUT domain containing methyltransferase 1 involved_in IBA
ISO		 PMID:21873635
(PMID:28431233)		 RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 3:13,451,191...13,458,919
Ensembl chr 3:13,451,202...13,493,355 		JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in ISO (PMID:15973356), (PMID:23661684) RGD PMID:15973356 PMID:23661684 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO
ISS		 (PMID:28431233)
GO_REF:0000024		 RGD
UniProt		 PMID:28431233 GO_REF:0000024 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
G Zc3h7a zinc finger CCCH type containing 7 A involved_in ISO
IBA		 (PMID:28431233)
PMID:21873635		 RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr10:4,473,177...4,512,669
Ensembl chr10:4,473,203...4,512,665 		JBrowse link
G Zc3h7b zinc finger CCCH-type containing 7B involved_in ISO
IBA		 (PMID:28431233)
PMID:21873635		 RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 7:113,262,142...113,310,399
Ensembl chr 7:113,262,165...113,310,399 		JBrowse link
miRNA-mediated gene silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
ISS
IEA		 (PMID:15260970), (PMID:17524464), (PMID:18771919)
(MGI:5616320|PMID:16357216)
GO_REF:0000024
GO_REF:0000104		 RGD
UniProt		 PMID:15260970 PMID:16357216 PMID:17524464 PMID:18771919 GO_REF:0000024 GO_REF:0000104 MGI:5616320 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Mir1 microRNA 1 involved_in ISO (PMID:23499676), (PMID:25802280) RGD PMID:23499676 PMID:25802280 NCBI chr18:1,887,537...1,887,623 JBrowse link
G Mir100 microRNA 100 involved_in ISO (PMID:22684006) RGD PMID:22684006 NCBI chr 8:41,901,225...41,901,304
Ensembl chr 8:41,901,225...41,901,304 		JBrowse link
G Mir106a microRNA 106a involved_in ISO (PMID:26265888) RGD PMID:26265888 NCBI chr  X:132,422,584...132,422,661
Ensembl chr  X:132,422,584...132,422,661 		JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (PMID:28214897) RGD PMID:28214897 NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052 		JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (PMID:28214897) RGD PMID:28214897 NCBI chr11:16,245,620...16,245,707 JBrowse link
G Mir128-1 microRNA 128-1 involved_in ISO (PMID:33058756) RGD PMID:33058756 NCBI chr13:39,699,449...39,699,530
Ensembl chr13:39,699,449...39,699,530 		JBrowse link
G Mir128-2 microRNA 128-2 involved_in ISO (PMID:33058756) RGD PMID:33058756 NCBI chr 8:112,085,467...112,085,550
Ensembl chr 8:112,085,467...112,085,550 		JBrowse link
G Mir130a microRNA 130a involved_in ISO (PMID:30741461) RGD PMID:30741461 NCBI chr 3:69,822,542...69,822,629
Ensembl chr 3:69,822,542...69,822,629 		JBrowse link
G Mir133a1 microRNA 133a-1 involved_in ISO (PMID:32205184) RGD PMID:32205184 NCBI chr18:1,885,082...1,885,168 JBrowse link
G Mir135b microRNA 135b involved_in ISO (PMID:27793001) RGD PMID:27793001 NCBI chr13:43,638,857...43,638,953
Ensembl chr13:43,638,857...43,638,953 		JBrowse link
G Mir137 microRNA 137 involved_in ISO (PMID:23275153) RGD PMID:23275153 NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985 		JBrowse link
G Mir140 microRNA 140 involved_in ISO (PMID:24928442) RGD PMID:24928442 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mir145 microRNA 145 involved_in ISO (PMID:29883722) RGD PMID:29883722 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Mir146a microRNA 146a involved_in ISO (PMID:30779466) RGD PMID:30779466 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir151 microRNA 151 involved_in ISO (PMID:20305651) RGD PMID:20305651 NCBI chr 7:105,172,377...105,172,473 JBrowse link
G Mir185 microRNA 185 involved_in ISO (PMID:23459944), (PMID:23951060), (PMID:26316588), (PMID:29053187) RGD PMID:23459944 PMID:23951060 PMID:26316588 PMID:29053187 NCBI chr11:82,664,716...82,664,795
Ensembl chr11:82,664,716...82,664,795 		JBrowse link
G Mir18a microRNA 18a involved_in ISO (PMID:29988076) RGD PMID:29988076 NCBI chr15:92,180,765...92,180,860
Ensembl chr15:92,180,765...92,180,860 		JBrowse link
G Mir190b microRNA 190b involved_in ISO (PMID:32039833) RGD PMID:32039833 NCBI chr 2:175,514,800...175,514,877
Ensembl chr 2:175,514,800...175,514,877 		JBrowse link
G Mir191 microRNA 191 involved_in ISO (PMID:31874245) RGD PMID:31874245 NCBI chr 8:109,264,098...109,264,188 JBrowse link
G Mir192 microRNA 192 involved_in ISO (PMID:28483554) RGD PMID:28483554 NCBI chr 1:203,564,946...203,565,055
Ensembl chr 1:203,564,946...203,565,055 		JBrowse link
G Mir195 microRNA 195 involved_in ISO (PMID:31921616) RGD PMID:31921616 NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924 		JBrowse link
G Mir196a microRNA 196a acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502 PMID:15361871 MGI:3042528 MGI:3510301 NCBI chr 7:134,110,400...134,110,509
Ensembl chr 7:134,110,400...134,110,509 		JBrowse link
G Mir196b microRNA 196b acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502) RGD PMID:15105502 MGI:3042528 NCBI chr 4:81,330,487...81,330,571
Ensembl chr 4:81,330,487...81,330,571 		JBrowse link
G Mir196c microRNA 196c acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502 PMID:15361871 MGI:3042528 MGI:3510301 NCBI chr10:81,231,006...81,231,085
Ensembl chr10:81,231,006...81,231,085 		JBrowse link
G Mir1b microRNA 1b involved_in ISO (PMID:23499676), (PMID:25802280) RGD PMID:23499676 PMID:25802280 NCBI chr 3:167,487,117...167,487,201
Ensembl chr 3:167,487,117...167,487,201 		JBrowse link
G Mir206 microRNA 206 involved_in ISO (PMID:23499676) RGD PMID:23499676 NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332 		JBrowse link
G Mir20a microRNA 20a involved_in ISO (PMID:31368162) RGD PMID:31368162 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Mir210 microRNA 210 involved_in ISO (PMID:29944867) RGD PMID:29944867 NCBI chr 1:196,326,343...196,326,452
Ensembl chr 1:196,326,337...196,326,454 		JBrowse link
G Mir212 microRNA 212 involved_in ISO (PMID:26693054) RGD PMID:26693054 NCBI chr10:60,023,403...60,023,513
Ensembl chr10:60,023,403...60,023,513 		JBrowse link
G Mir214 microRNA 214 involved_in ISO (PMID:30703347) RGD PMID:30703347 NCBI chr13:74,588,374...74,588,481
Ensembl chr13:74,588,372...74,588,481 		JBrowse link
G Mir223 microRNA 223 involved_in ISO (PMID:23459944), (PMID:34637033) RGD PMID:23459944 PMID:34637033 NCBI chr  X:61,141,887...61,141,996
Ensembl chr  X:61,141,887...61,141,996 		JBrowse link
G Mir23a microRNA 23a involved_in ISO (PMID:26400397) RGD PMID:26400397 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir24-2 microRNA 24-2 involved_in ISO (PMID:30378100) RGD PMID:30378100 NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir27a microRNA 27a involved_in ISO (PMID:25915942), (PMID:26400397) RGD PMID:25915942 PMID:26400397 NCBI chr19:23,954,831...23,954,917
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir30b microRNA 30b involved_in ISO (PMID:23968872) RGD PMID:23968872 NCBI chr 7:100,132,589...100,132,675
Ensembl chr 7:100,132,589...100,132,675 		JBrowse link
G Mir326 microRNA 326 involved_in ISO (PMID:24279830) RGD PMID:24279830 NCBI chr 1:153,854,029...153,854,123
Ensembl chr 1:153,854,029...153,854,123 		JBrowse link
G Mir342 microRNA 342 involved_in ISO (PMID:23951060) RGD PMID:23951060 NCBI chr 6:127,565,269...127,565,367
Ensembl chr 6:127,565,269...127,565,367 		JBrowse link
G Mir3582 microRNA 3582 involved_in ISO (PMID:32205184) RGD PMID:32205184 NCBI chr18:1,885,063...1,885,180
Ensembl chr18:1,885,063...1,885,180 		JBrowse link
G Mir423 microRNA 423 involved_in ISO (PMID:32264887) RGD PMID:32264887 NCBI chr10:61,914,142...61,914,220
Ensembl chr10:61,914,133...61,914,226 		JBrowse link
G Mir486 microRNA 486 involved_in ISO (PMID:25857263) RGD PMID:25857263
G Mir665 microRNA 665 involved_in ISO (PMID:34454184) RGD PMID:34454184 NCBI chr 6:128,539,440...128,539,533
Ensembl chr 6:128,539,440...128,539,533 		JBrowse link
G Mir9-3 microRNA 9-3 involved_in ISO (PMID:29584810) RGD PMID:29584810 NCBI chr 1:133,440,049...133,440,138 JBrowse link
G Mir93 microRNA 93 involved_in ISO (PMID:28797104) RGD PMID:28797104 NCBI chr12:17,043,135...17,043,221
Ensembl chr12:17,043,135...17,043,221 		JBrowse link
G Mir96 microRNA 96 involved_in ISO (PMID:23459944) RGD PMID:23459944 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Mir98 microRNA 98 involved_in ISO (PMID:27860183), (PMID:28251559), (PMID:30195495) RGD PMID:27860183 PMID:28251559 PMID:30195495 NCBI chr  X:20,981,235...20,981,342
Ensembl chr  X:20,981,235...20,981,342 		JBrowse link
G Mirlet7a1 microRNA let-7a-1 involved_in ISO (PMID:17671087) RGD PMID:17671087 NCBI chr17:16,113,766...16,113,859
Ensembl chr17:16,113,768...16,113,867 		JBrowse link
G Mirlet7b microRNA let-7b involved_in ISO (PMID:29471394) RGD PMID:29471394 NCBI chr 7:116,804,186...116,804,270
Ensembl chr 7:116,804,186...116,804,270 		JBrowse link
G Mirlet7c2 microRNA let7c-2 involved_in ISO (PMID:17671087) RGD PMID:17671087 NCBI chr 7:116,803,771...116,803,865
Ensembl chr 7:116,803,771...116,803,865 		JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21245038), (PMID:21666256)		 Ensembl
RGD		 PMID:21245038 PMID:21666256 GO_REF:0000107 NCBI chr16:1,915,386...1,925,427
Ensembl chr16:1,915,386...1,925,887 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA		 (PMID:20691904)
PMID:21873635
(MGI:4881376|PMID:20691904)		 RGD PMID:20691904 PMID:21873635 MGI:4881376, RGD:13792537 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:19864255)		 Ensembl
UniProt
RGD		 PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28335001)		 UniProt
RGD		 PMID:28335001 GO_REF:0000024 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756 		JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19864255)		 UniProt
Ensembl
RGD		 PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO
IEA
ISS		 (PMID:19864255)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA		 (PMID:18083837)
PMID:21873635		 RGD PMID:18083837 PMID:21873635 RGD:13792537 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:19864255)		 UniProt
Ensembl
RGD		 PMID:19864255 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial RNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS		 (PMID:21593607)
GO_REF:0000024		 RGD
UniProt		 PMID:21593607 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrpprc leucine-rich pentatricopeptide repeat containing acts_upstream_of
involved_in		 ISO
IEA		 MGI:3857306|MGI:5438913 (MGI:5301479|PMID:21880015), (MGI:5438202|PMID:22045337)
GO_REF:0000107		 RGD
Ensembl		 PMID:21880015 PMID:22045337 GO_REF:0000107 MGI:5301479 MGI:5438202 NCBI chr 6:9,859,867...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18501193) RGD PMID:18501193 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
mitochondrial RNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastkd1 FAST kinase domains 1 involved_in ISO (PMID:28335001) RGD PMID:28335001 NCBI chr 3:54,449,710...54,475,624
Ensembl chr 3:54,449,711...54,475,540 		JBrowse link
mitochondrial RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastk Fas-activated serine/threonine kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,732,273...10,736,332
Ensembl chr 4:10,732,256...10,737,430 		JBrowse link
G Fastkd1 FAST kinase domains 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:54,449,710...54,475,624
Ensembl chr 3:54,449,711...54,475,540 		JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174 		JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:34,858,342...34,866,988
Ensembl chr 1:34,858,219...34,866,973 		JBrowse link
G Fastkd5 FAST kinase domains 5 involved_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:117,830,227...117,847,737
Ensembl chr 3:117,830,083...117,847,820 		JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756 		JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS		 (PMID:19864255)
GO_REF:0000024		 RGD
UniProt		 PMID:19864255 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in IBA
ISO
IEA
ISS		 PMID:21873635
(PMID:21593607)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21593607 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29040705)		 UniProt
Ensembl
RGD		 PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA		 (PMID:11504732)
PMID:21873635		 RGD PMID:11504732 PMID:21873635 RGD:13792537 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611 		JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705), (PMID:29880640)		 UniProt
Ensembl
RGD		 PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:25953853), (PMID:29880640)		 UniProt
RGD		 PMID:25953853 PMID:29880640 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:29040705), (PMID:29880640)		 UniProt
RGD		 PMID:29040705 PMID:29880640 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23042678), (PMID:25925575), (PMID:28888424)		 UniProt
Ensembl
RGD		 PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) RGD PMID:23042678 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA
ISO		 PMID:21873635
(PMID:26189817)		 RGD PMID:26189817 PMID:21873635 RGD:13792537 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Mettl8 methyltransferase 8, methylcytidine involved_in ISO (PMID:34774131) RGD PMID:34774131 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:34774131)
(PMID:24901367)		 RGD PMID:24901367 PMID:34774131 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS		 (PMID:27132592)
GO_REF:0000024		 RGD
UniProt		 PMID:27132592 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 SGD:S000003205 (MGI:2677576|PMID:14522080)
PMID:21873635		 RGD PMID:14522080 PMID:21873635 MGI:2677576, RGD:13792537 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx56 DEAD-box helicase 56 acts_upstream_of_negative_effect ISO (PMID:33109765) RGD PMID:33109765 NCBI chr14:81,112,008...81,122,395
Ensembl chr14:81,112,012...81,122,333 		JBrowse link
G Fbxl2 F-box and leucine-rich repeat protein 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:113,916,660...113,965,137
Ensembl chr 8:113,913,373...113,965,066 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24514761) RGD PMID:24514761 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Phb1 prohibitin 1 involved_in ISO (MGI:6436975|PMID:29324904) RGD PMID:29324904 MGI:6436975 NCBI chr10:80,605,268...80,618,043
Ensembl chr10:80,605,251...80,618,042 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:25106914) RGD PMID:25106914 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933 		JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763 		JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:161,144,533...161,156,294
Ensembl chr 3:161,144,548...161,156,300 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196 		JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr12:17,071,465...17,072,736
Ensembl chr12:17,071,465...17,072,735 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15937220), (PMID:20695905)		 UniProt
RGD		 PMID:15937220 PMID:20695905 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407 		JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 acts_upstream_of_or_within ISO (MGI:3619747|PMID:16115198) RGD PMID:16115198 MGI:3619747 NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451 		JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IBA
ISO		 PMID:21873635
(PMID:18688255)		 RGD PMID:18688255 PMID:21873635 RGD:13792537 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IBA		 (PMID:18688255)
(MGI:4418605|PMID:18955505)
PMID:21873635		 RGD PMID:18688255 PMID:18955505 PMID:21873635 MGI:4418605, RGD:13792537 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G LOC100363294 stem-loop binding protein-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577 		JBrowse link
G Lsm10 LSM10, U7 small nuclear RNA associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:138,365,983...138,375,856
Ensembl chr 5:138,373,119...138,377,505 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO
IBA		 (MGI:2676509|PMID:12975319)
PMID:21873635
(PMID:33230297)		 RGD PMID:12975319 PMID:33230297 PMID:21873635 MGI:2676509, RGD:13792537 NCBI chr10:30,367,841...30,385,956
Ensembl chr10:30,370,727...30,385,944 		JBrowse link
G Slbp stem-loop binding protein involved_in IBA
ISO		 PMID:21873635
(MGI:4353869|PMID:19470752)		 RGD PMID:19470752 PMID:21873635 MGI:4353869, RGD:13792537 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906 		JBrowse link
G Zfp473 zinc finger protein 473 involved_in ISO (PMID:16714279) RGD PMID:16714279 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS		 (PMID:15728250)
PMID:15181151		 RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000066758 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G ENSRNOG00000069556 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:135,677,760...135,678,704 JBrowse link
G Prpf39 pre-mRNA processing factor 39 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825 		JBrowse link
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in ISO
IEA
ISS		 (PMID:9885563)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:9885563 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
(MGI:84585|PMID:8940107)
PMID:21873635		 Ensembl
RGD		 PMID:8940107 PMID:21873635 GO_REF:0000107 MGI:84585, RGD:13792537 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IBA
IEA		 PMID:21873635
GO_REF:0000104		 UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638 		JBrowse link
G Snrpc-ps3 small nuclear ribonucleoprotein polypeptide C, pseudogene 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:14,191,681...14,192,406
Ensembl chr10:14,191,662...14,192,401 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107 PMID:9885563 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778 		JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO
IBA		 (PMID:20695905), (PMID:23187700), (PMID:29276085)
PMID:21873635		 RGD PMID:20695905 PMID:23187700 PMID:29276085 PMID:21873635 RGD:13792537 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:20695905), (PMID:29276085)
GO_REF:0000107
PMID:21873635		 UniProt
RGD
Ensembl		 PMID:20695905 PMID:29276085 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085)		 UniProt
RGD		 PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 IMP RGD PMID:34731606 RGD:329845875 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161521|PMID:29799838)
GO_REF:0000107		 RGD
Ensembl		 PMID:29799838 GO_REF:0000107 MGI:6161521 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028 		JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:68,067,119...68,089,948 JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,280,486...114,330,110
Ensembl chr 8:114,280,490...114,330,107 		JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:21070968), (PMID:28002401)
(MGI:4849882|PMID:21070968)		 RGD PMID:21070968 PMID:28002401 MGI:4849882 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:87,355,409...87,736,616
Ensembl chr 9:87,356,457...87,736,616 		JBrowse link
G Dxo decapping exoribonuclease involved_in ISO
ISS		 (PMID:29601584)
(MGI:5488528|PMID:23523372), (MGI:6368104|PMID:28283058)
GO_REF:0000024		 RGD
UniProt		 PMID:23523372 PMID:28283058 PMID:29601584 GO_REF:0000024 MGI:5488528 MGI:6368104 NCBI chr20:3,993,322...3,995,484
Ensembl chr20:3,993,327...3,995,494 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISO
ISS		 (PMID:10205060)
GO_REF:0000024		 RGD
UniProt		 PMID:10205060 GO_REF:0000024 NCBI chr20:3,855,104...3,859,148
Ensembl chr20:3,856,006...3,873,240 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISO
ISS		 (PMID:10205060)
GO_REF:0000024		 RGD
UniProt		 PMID:10205060 GO_REF:0000024 NCBI chr20:3,870,765...3,873,221 JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:5439239|PMID:22844247)		 Ensembl
RGD		 PMID:22844247 GO_REF:0000107 MGI:5439239 NCBI chr 9:1,862,555...1,872,301
Ensembl chr 9:1,862,899...1,872,451 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase subunit involved_in ISO (MGI:5927282|PMID:28965759) RGD PMID:28965759 MGI:5927282 NCBI chr 2:211,530,598...211,546,858
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl16 methyltransferase 16, N6-methyladenosine involved_in ISO (MGI:6114846|PMID:29262316) RGD PMID:29262316 MGI:6114846 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) RGD PMID:28637692 PMID:28792938 PMID:28965759 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mir144 microRNA 144 involved_in ISO MGI:3619412|MGI:5562734 (MGI:6442632|PMID:30971389) RGD PMID:30971389 MGI:6442632 NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430 		JBrowse link
G Mir451a microRNA 451a involved_in ISO MGI:2676829|MGI:5562734 (MGI:6442632|PMID:30971389) RGD PMID:30971389 MGI:6442632 NCBI chr10:62,961,520...62,961,591
Ensembl chr10:62,961,520...62,961,591 		JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO MGI:2676795|MGI:3619050 (MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:5439239 NCBI chr 7:116,804,186...116,804,270
Ensembl chr 7:116,804,186...116,804,270 		JBrowse link
G Mirlet7c1 microRNA let-7c-1 acts_upstream_of_or_within ISO MGI:2676794|MGI:3619050 (MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:5439239 NCBI chr11:16,201,163...16,201,256
Ensembl chr11:16,201,158...16,201,265 		JBrowse link
G Mirlet7c2 microRNA let7c-2 acts_upstream_of_or_within ISO MGI:2676794|MGI:2676795 (MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:5439239 NCBI chr 7:116,803,771...116,803,865
Ensembl chr 7:116,803,771...116,803,865 		JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (MGI:4431145|PMID:20133598) RGD PMID:20133598 MGI:4431145 NCBI chr 1:78,635,668...78,637,128
Ensembl chr 1:78,635,668...78,637,128 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (MGI:6368680|PMID:31101919) RGD PMID:31101919 MGI:6368680 NCBI chr 9:98,741,627...98,755,039
Ensembl chr 9:98,742,360...98,755,039 		JBrowse link
G Nudt16 nudix hydrolase 16 involved_in IBA
ISO		 PMID:21873635
(MGI:4849882|PMID:21070968)
(PMID:21070968), (PMID:21337011)		 RGD PMID:21070968 PMID:21337011 PMID:21873635 MGI:4849882, RGD:13792537 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998 		JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:10,636,174...10,638,090
Ensembl chr10:10,636,174...10,688,370 		JBrowse link
G Nudt16l2 nudix hydrolase 16 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:105,754,821...105,756,548
Ensembl chr 8:105,754,844...105,756,518 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:12721301), (PMID:16055741) RGD PMID:12721301 PMID:16055741 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:30930054)		 UniProt
Ensembl
RGD		 PMID:30930054 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,691,429...65,705,257
Ensembl chr 7:65,691,435...65,705,716 		JBrowse link
G Slfn14 schlafen family member 14 involved_in ISO (PMID:25996083)
(MGI:5705207|PMID:25996083)		 RGD PMID:25996083 MGI:5705207 NCBI chr10:68,076,326...68,087,794 JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:57,095,205...57,494,501
Ensembl chr 4:57,095,208...57,530,843 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673)		 RGD PMID:27558897 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 More... MGI:6316439 MGI:6316688 MGI:6317061 NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (MGI:5706859|PMID:26000482) RGD PMID:26000482 MGI:5706859 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D acts_upstream_of_or_within ISO MGI:5588370 (MGI:5567042|PMID:24415781) RGD PMID:24415781 MGI:5567042 NCBI chr 1:2,313,110...2,348,820
Ensembl chr 1:2,314,324...2,348,819 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:10751406), (PMID:11782475)
(PMID:10330172), (PMID:20221403)		 UniProt
RGD		 PMID:10330172 PMID:10751406 PMID:11782475 PMID:20221403 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within IDA PMID:10751406 MGI PMID:10751406 RGD:1580602 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (MGI:5320815|PMID:22367205)
(PMID:34611029)		 RGD PMID:22367205 PMID:34611029 MGI:5320815 NCBI chr 6:10,490,032...10,494,073
Ensembl chr 6:10,490,032...10,494,064 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 acts_upstream_of_or_within ISO (MGI:49288|PMID:1370712) RGD PMID:1370712 MGI:49288 NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008904.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G C3h9orf78 similar to human chromosome 9 open reading frame 78 involved_in ISO (PMID:35241646) RGD PMID:35241646 NCBI chr 3:14,264,263...14,272,580
Ensembl chr 3:14,264,083...14,272,764 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829 		JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325 		JBrowse link
G Cwc15-ps3 CWC15 spliceosome-associated protein, pseudogene 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:76,016,636...76,017,401
Ensembl chr 2:76,016,684...76,017,358 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISS
ISO		 GO_REF:0000024
(PMID:18426921)		 UniProt
RGD		 PMID:18426921 GO_REF:0000024 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
GO_REF:0000002
(PMID:18426921)		 UniProt
Ensembl
InterPro
RGD		 PMID:18426921 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625