Srsf9 (serine and arginine rich splicing factor 9) - Rat Genome Database

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Gene: Srsf9 (serine and arginine rich splicing factor 9) Chinchilla lanigera
Analyze
Symbol: Srsf9
Name: serine and arginine rich splicing factor 9
RGD ID: 8790510
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); response to alkaloid (ortholog); response to toxic substance (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Experimental Autoimmune Encephalomyelitis (ortholog); genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/arginine-rich splicing factor 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,175,760 - 11,183,597 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,175,760 - 11,183,597 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Srsf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,175,760 - 11,183,597 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,175,760 - 11,183,597 (+)NCBIChiLan1.0ChiLan1.0
SRSF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,461,672 - 120,469,748 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,461,672 - 120,495,946 (-)EnsemblGRCh38hg38GRCh38
GRCh3712120,899,475 - 120,907,551 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,383,854 - 119,391,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412119,362,191 - 119,370,278NCBI
Celera12120,534,186 - 120,542,273 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12117,908,257 - 117,917,448 (-)NCBIHuRef
CHM1_112120,867,963 - 120,876,363 (-)NCBICHM1_1
T2T-CHM13v2.012120,450,186 - 120,458,930 (-)NCBIT2T-CHM13v2.0
Srsf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,465,236 - 115,471,139 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,465,236 - 115,471,139 (+)EnsemblGRCm39 Ensembl
GRCm385115,327,163 - 115,333,843 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,327,177 - 115,333,080 (+)EnsemblGRCm38mm10GRCm38
MGSCv375115,777,186 - 115,783,089 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,588,176 - 115,594,079 (+)NCBIMGSCv36mm8
Celera5112,424,239 - 112,430,116 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.05NCBI
Srsf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,938,948 - 46,945,213 (-)NCBIGRCr8
mRatBN7.21241,278,225 - 41,284,502 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,275,687 - 41,284,499 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,445,022 - 42,451,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,058,690 - 43,064,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,119,244 - 42,125,445 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,039,714 - 47,046,022 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,039,716 - 47,046,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,833,030 - 48,839,338 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,546,330 - 42,552,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,409,719 - 42,415,978 (-)NCBI
Celera1242,899,173 - 42,905,366 (-)NCBICelera
Cytogenetic Map12q16NCBI
SRSF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,530,009 - 128,538,799 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,526,386 - 128,535,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012118,043,325 - 118,052,107 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112121,417,557 - 121,425,708 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,417,557 - 121,425,708 (-)Ensemblpanpan1.1panPan2
SRSF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,363,275 - 16,369,699 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,363,475 - 16,369,666 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,366,878 - 16,373,300 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,630,436 - 16,636,863 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,626,148 - 16,636,878 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,590,501 - 16,596,923 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,667,211 - 16,673,632 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,709,046 - 16,715,469 (-)NCBIUU_Cfam_GSD_1.0
Srsf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,986,030 - 145,992,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668484,917 - 495,699 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668484,922 - 491,576 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRSF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,419,093 - 40,434,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,425,412 - 40,433,950 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,892,690 - 42,901,227 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRSF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,813,964 - 115,822,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,810,642 - 115,822,700 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,277,674 - 129,286,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srsf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,201,217 - 13,209,481 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,202,014 - 13,212,611 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018089   ⟹   ENSCLAP00000017911
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545511,175,760 - 11,183,597 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018090   ⟹   ENSCLAP00000017912
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545511,178,621 - 11,183,241 (+)Ensembl
RefSeq Acc Id: XM_005396505   ⟹   XP_005396562
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545511,175,760 - 11,183,597 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005396562 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017911
  ENSCLAP00000017911.1
  ENSCLAP00000017912.1
RefSeq Acc Id: XP_005396562   ⟸   XM_005396505
- UniProtKB: A0A8C2VV18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017911   ⟸   ENSCLAT00000018089
RefSeq Acc Id: ENSCLAP00000017912   ⟸   ENSCLAT00000018090
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012289 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018089 ENTREZGENE
  ENSCLAT00000018089.1 UniProtKB/TrEMBL
  ENSCLAT00000018090.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SRSF9_RRM1 UniProtKB/TrEMBL
  SRSF9_RRM2 UniProtKB/TrEMBL
NCBI Gene Srsf9 ENTREZGENE
PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  SINGLE-STRANDED NUCLEIC ACID-BINDING PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2VPY1_CHILA UniProtKB/TrEMBL
  A0A8C2VV18 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Srsf9  serine and arginine rich splicing factor 9    serine/arginine-rich splicing factor 9  Symbol and/or name change 5135510 APPROVED