Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA processing
go back to main search page
Accession:GO:0006364 term browser browse the term
Definition:Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Synonyms:narrow_synonym: 35S primary transcript processing
 alt_id: GO:0006365


show annotations for term's descendants           Sort by:
rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07049043.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 5:97,801,560...97,802,512 JBrowse link
G Ak6 adenylate kinase 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:31,794,316...31,806,375
Ensembl chr 2:31,794,519...31,806,371
Ensembl chr20:31,794,519...31,806,371 		JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor acts_upstream_of_or_within ISO MGI:1890613 (PMID:10891491), (PMID:15225545) RGD PMID:10891491 PMID:15225545 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Brix1 biogenesis of ribosomes BRX1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:59,450,608...59,461,486
Ensembl chr 2:59,450,614...59,461,495 		JBrowse link
G Bysl bystin-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in ISO (PMID:30283081) RGD PMID:30283081 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142 		JBrowse link
G Ddx10 DEAD-box helicase 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:53,488,656...53,643,373
Ensembl chr 8:53,488,656...53,643,373 		JBrowse link
G Ddx21 DExD-box helicase 21 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:30,534,319...30,554,513
Ensembl chr20:30,534,319...30,554,543 		JBrowse link
G Ddx27 DEAD-box helicase 27 involved_in ISO (PMID:25825154) RGD PMID:25825154 NCBI chr 3:155,744,182...155,763,380
Ensembl chr 3:155,744,150...155,763,372 		JBrowse link
G Ddx47 DEAD-box helicase 47 involved_in ISO
IBA		 (PMID:16963496)
GO_REF:0000033		 RGD
GO_Central		 PMID:16963496 GO_REF:0000033 NCBI chr 4:167,845,652...167,858,115
Ensembl chr 4:167,845,640...167,859,115 		JBrowse link
G Ddx49 DEAD-box helicase 49 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:19,125,388...19,133,042
Ensembl chr16:19,125,384...19,133,616 		JBrowse link
G Ddx52 DExD-box helicase 52 TAS RGD PMID:9154839 RGD:704356 NCBI chr10:68,824,594...68,847,400
Ensembl chr10:68,824,645...68,848,266 		JBrowse link
G Ddx54 DEAD-box helicase 54 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:35,934,713...35,949,956
Ensembl chr12:35,934,716...35,972,523 		JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:75,820,040...75,850,450
Ensembl chr15:75,823,436...75,850,642 		JBrowse link
G Drosha drosha ribonuclease III involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688 		JBrowse link
G Ebna1bp2 EBNA1 binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:132,148,164...132,152,730
Ensembl chr 5:132,148,143...132,153,267 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G ENSRNOG00000062802 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:50,647,961...50,648,980 JBrowse link
G ENSRNOG00000063066 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:65,669,645...65,670,408 JBrowse link
G ENSRNOG00000063747 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 2:161,604,723...161,605,121 JBrowse link
G Esf1 ESF1 nucleolar pre-rRNA processing protein homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:127,454,744...127,507,941
Ensembl chr 3:127,454,811...127,507,817 		JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11110791) RGD PMID:11110791 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc5 exosome component 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265 		JBrowse link
G Exosc9 exosome component 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
G Fbl fibrillarin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Gar1 GAR1 ribonucleoprotein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431
Ensembl chr10:61,066,425...61,073,431 		JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 acts_upstream_of_or_within ISO UniProtKB:P32899 (PMID:12655004) RGD PMID:12655004 NCBI chr 8:57,339,528...57,340,416
Ensembl chr 8:57,339,496...57,340,414 		JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075 		JBrowse link
G Iqcd IQ motif containing D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:35,955,522...35,972,420
Ensembl chr12:35,934,716...35,972,523 		JBrowse link
G Krr1 KRR1, small subunit processome component homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:47,475,557...47,486,996
Ensembl chr 7:47,475,557...47,486,985 		JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in ISO (PMID:22083961) RGD PMID:22083961 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687 		JBrowse link
G LOC102551819 U3 small nucleolar RNA-associated protein 14 homolog B-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:80,120,622...80,129,166
Ensembl chr 9:80,115,077...80,129,504 		JBrowse link
G Lyar Ly1 antibody reactive involved_in ISO
IBA
ISS
IEA		 (PMID:24495227)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
UniProt
Ensembl		 PMID:24495227 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in ISO (PMID:33428944) RGD PMID:33428944 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039 		JBrowse link
G Mphosph10 M-phase phosphoprotein 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:117,948,134...117,964,149
Ensembl chr 1:117,948,134...117,964,149 		JBrowse link
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in ISO (PMID:35177605) RGD PMID:35177605 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in ISO (PMID:35177605) RGD PMID:35177605 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 involved_in ISO (PMID:35177605) RGD PMID:35177605 NCBI chr10:61,095,920...61,125,421
Ensembl chr10:61,095,952...61,102,630 		JBrowse link
G Mrto4 MRT4 homolog, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:151,601,780...151,608,533
Ensembl chr 5:151,601,780...151,608,287 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO (PMID:29107693) RGD PMID:29107693 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627 		JBrowse link
G Myg1 MYG1 exonuclease involved_in ISO
IEA		 (PMID:31081026)
GO_REF:0000107		 RGD
Ensembl		 PMID:31081026 GO_REF:0000107 NCBI chr 7:133,456,778...133,463,985
Ensembl chr 7:133,456,750...133,466,969 		JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Nol6 nucleolar protein 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336 		JBrowse link
G Nol8 nucleolar protein 8 involved_in ISO (PMID:16963496) RGD PMID:16963496 NCBI chr17:14,990,394...15,013,784
Ensembl chr17:14,990,417...15,013,848 		JBrowse link
G Nop10l1 NOP10 ribonucleoprotein like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:68,656,172...68,656,369
Ensembl chr 3:68,656,172...68,656,363 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in ISO (PMID:36161484) RGD PMID:36161484 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902 		JBrowse link
G Npm3 nucleophosmin/nucleoplasmin, 3 acts_upstream_of_or_within ISO (PMID:15596447) RGD PMID:15596447 NCBI chr 1:244,595,638...244,597,623
Ensembl chr 1:244,595,644...244,597,591 		JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388 		JBrowse link
G Nvl nuclear VCP-like involved_in ISO (PMID:29107693) RGD PMID:29107693 NCBI chr13:92,851,023...92,906,749
Ensembl chr13:92,853,650...92,906,049 		JBrowse link
G Pa2g4 proliferation-associated 2G4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:984,795...992,264
Ensembl chr 7:983,971...992,331 		JBrowse link
G Pdcd11 programmed cell death 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:245,980,840...246,021,999
Ensembl chr 1:245,980,880...246,021,999 		JBrowse link
G Pelp1 proline, glutamate and leucine rich protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,094,798...55,111,833
Ensembl chr10:55,094,796...55,111,994 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within ISO (PMID:16738141)
MGI:1334460 (PMID:15225545)		 RGD PMID:15225545 PMID:16738141 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290 		JBrowse link
G Pih1d2 PIH1 domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:50,966,885...50,976,901
Ensembl chr 8:50,966,885...50,975,656 		JBrowse link
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 involved_in ISO
IEA		 (PMID:19369196)
GO_REF:0000002		 RGD
InterPro		 PMID:19369196 GO_REF:0000002 NCBI chr  X:67,232,066...67,238,709
Ensembl chr  X:67,232,081...67,238,702 		JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:90,960,026...90,968,360
Ensembl chr 1:90,960,022...90,968,443 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:41,376,755...41,384,882
Ensembl chr12:41,376,755...41,381,336 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:19,189,384...19,190,425
Ensembl chr12:19,189,138...19,190,674 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731 		JBrowse link
G Rbfa ribosome binding factor A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:73,639,264...73,648,914
Ensembl chr18:73,639,260...73,648,915 		JBrowse link
G Rbm34-ps1 RNA binding motif protein 34, pseudogene 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:41,151,123...41,153,682
Ensembl chr 6:41,151,123...41,153,682
Ensembl chr 6:41,151,123...41,153,682 		JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:10,280,654...10,291,003
Ensembl chr 3:10,280,654...10,290,996 		JBrowse link
G Rnasel ribonuclease L IDA RGD PMID:8469023 RGD:2291995 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704 		JBrowse link
G Rpf1 ribosome production factor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl14 ribosomal protein L14 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 8:120,286,035...120,289,160
Ensembl chr 8:120,284,645...120,289,064 		JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO
IEA		 (PMID:18697920)
GO_REF:0000107		 RGD
Ensembl		 PMID:18697920 GO_REF:0000107 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966 		JBrowse link
G Rpl27 ribosomal protein L27 involved_in ISO
ISS		 (PMID:25424902)
GO_REF:0000024		 RGD
UniProt		 PMID:25424902 GO_REF:0000024 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193 		JBrowse link
G Rpl35a ribosomal protein L35A involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr11:67,726,031...67,729,953
Ensembl chr11:67,726,032...67,729,942
Ensembl chr 5:67,726,032...67,729,942
Ensembl chr 6:67,726,032...67,729,942
Ensembl chr 7:67,726,032...67,729,942
Ensembl chr12:67,726,032...67,729,942 		JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290 		JBrowse link
G Rpl7 ribosomal protein L7 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:57,907,352...57,908,732
Ensembl chr 8:57,907,352...57,908,732 		JBrowse link
G Rps15 ribosomal protein S15 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
Ensembl chr 7:9,416,004...9,417,450 		JBrowse link
G Rps16 ribosomal protein S16 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
Ensembl chr19:83,643,130...83,646,206 		JBrowse link
G Rps17 ribosomal protein S17 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
Ensembl chr 8:135,295,919...135,298,535 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
Ensembl chr 7:80,480,951...80,486,508 		JBrowse link
G Rps24 ribosomal protein S24 involved_in ISO (PMID:18230666), (PMID:18697920) RGD PMID:18230666 PMID:18697920 NCBI chr16:89,538...94,267
Ensembl chr16:89,604...94,279 		JBrowse link
G Rps25 ribosomal protein s25 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
Ensembl chr 8:44,733,029...44,737,271 		JBrowse link
G Rps27 ribosomal protein S27 involved_in ISO
ISS		 (PMID:25424902)
GO_REF:0000024		 RGD
UniProt		 PMID:25424902 GO_REF:0000024 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
Ensembl chr12:175,665,853...175,666,964 		JBrowse link
G Rps28 ribosomal protein S28 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps6 ribosomal protein S6 involved_in
acts_upstream_of_or_within		 ISO (PMID:18697920)
MGI:2387471 (PMID:16357222), (PMID:17000767)		 RGD PMID:16357222 PMID:17000767 PMID:18697920 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602 		JBrowse link
G Rps7 ribosomal protein S7 involved_in ISO
IBA		 (PMID:18697920)
GO_REF:0000033		 RGD
GO_Central		 PMID:18697920 GO_REF:0000033 NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145
Ensembl chr 5:45,223,980...45,271,145 		JBrowse link
G Rrp1 ribosomal RNA processing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:10,260,892...10,272,141
Ensembl chr20:10,260,870...10,272,144 		JBrowse link
G Rrp1b ribosomal RNA processing 1B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:10,123,111...10,148,704
Ensembl chr20:10,123,125...10,147,928 		JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in ISO (PMID:20038530) RGD PMID:20038530 NCBI chr 9:14,308,956...14,316,959
Ensembl chr 9:14,308,982...14,316,110 		JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in ISO
IBA		 (PMID:33199730)
GO_REF:0000033		 RGD
GO_Central		 PMID:33199730 GO_REF:0000033 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817 		JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in IEA GO_REF:0000043
GO_REF:0000104		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein involved_in ISO (PMID:26867678) RGD PMID:26867678 NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123 		JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO (PMID:17643419) RGD PMID:17643419 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
G Utp11 UTP11, small subunit processome component involved_in IEA GO_REF:0000104
GO_REF:0000043		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 5:136,931,279...136,946,164
Ensembl chr 5:136,931,008...136,946,191 		JBrowse link
G Utp14a UTP14A small subunit processome component involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:127,439,282...127,464,634
Ensembl chr  X:127,439,268...127,464,633 		JBrowse link
G Utp15 UTP15, small subunit processome component involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000043		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773 		JBrowse link
G Utp18 UTP18 small subunit processome component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:78,811,879...78,839,338
Ensembl chr10:78,811,880...78,839,627 		JBrowse link
G Utp20 UTP20 small subunit processome component involved_in ISO (PMID:17498821) RGD PMID:17498821 NCBI chr 7:23,134,630...23,215,639
Ensembl chr 7:23,134,637...23,215,632 		JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,680,984...169,694,431
Ensembl chr 4:169,680,983...169,694,443 		JBrowse link
G Wdr18 WD repeat domain 18 involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr 7:9,740,245...9,748,041
Ensembl chr 7:9,739,604...9,748,070 		JBrowse link
G Wdr36 WD repeat domain 36 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:24,473,657...24,501,773
Ensembl chr18:24,473,663...24,508,092 		JBrowse link
G Wdr55 WD repeat domain 55 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:28,375,366...28,378,834 JBrowse link
G Wdr74 WD repeat domain 74 involved_in ISO (PMID:29107693) RGD PMID:29107693 NCBI chr 1:205,631,769...205,636,558
Ensembl chr 1:205,631,824...205,636,563 		JBrowse link
G Wdr75 WD repeat domain 75 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:47,903,214...47,933,399
Ensembl chr 9:47,903,200...47,933,399 		JBrowse link
G Ybey ybeY metalloendoribonuclease involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:12,165,192...12,174,713
Ensembl chr20:12,165,237...12,174,713 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (PMID:17353269) RGD PMID:17353269 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191 		JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396
Ensembl chr 5:71,304,145...71,304,396 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:28,947,752...28,956,788
Ensembl chr17:28,947,734...28,956,788 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
Ensembl chr 5:167,346,201...167,347,470 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:34365507)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:34365507 GO_REF:0000024 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396
Ensembl chr 5:71,304,145...71,304,396 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
Ensembl chr 5:167,346,201...167,347,470 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25219674)		 UniProt
RGD		 PMID:25219674 GO_REF:0000024
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:14,751,310...14,755,213
Ensembl chr10:14,751,384...14,755,207 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,257,161...14,259,562
Ensembl chr10:14,257,171...14,259,561 		JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:174,140,831...174,168,757
Ensembl chr 1:174,141,993...174,168,665 		JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:131,016,146...131,143,347
Ensembl chr 5:131,016,126...131,143,329 		JBrowse link
G Exosc10 exosome component 10 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (PMID:10891491) RGD PMID:10891491 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G C1d C1D nuclear receptor corepressor involved_in ISO
IBA		 (PMID:17412707)
GO_REF:0000033		 RGD
GO_Central		 PMID:17412707 GO_REF:0000033 NCBI chr14:91,660,951...91,673,177
Ensembl chr14:91,660,989...91,672,852 		JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401 		JBrowse link
G Eri1 exoribonuclease 1 involved_in ISO (PMID:37352860) RGD PMID:37352860 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17412707), (PMID:20368444) RGD PMID:17412707 PMID:20368444 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:20368444) RGD PMID:20368444 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687 		JBrowse link
G Mak16 MAK16 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243 		JBrowse link
G Mphosph6 M phase phosphoprotein 6 involved_in ISO
IBA		 (PMID:17412707)
GO_REF:0000033		 RGD
GO_Central		 PMID:17412707 GO_REF:0000033 NCBI chr19:45,860,152...45,870,117
Ensembl chr19:45,860,154...45,870,170 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO
IBA		 (PMID:17412707)
GO_REF:0000033		 RGD
GO_Central		 PMID:17412707 GO_REF:0000033 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627 		JBrowse link
G Nol9 nucleolar protein 9 involved_in ISO (PMID:21063389) RGD PMID:21063389 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191 		JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370 		JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in ISO
IEA
ISS		 (PMID:16738141)
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:16738141 GO_REF:0000024 GO_REF:0000104 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO
IBA
IEA
ISS		 (PMID:16043514)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:16043514 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 9:61,475,498...61,502,762
Ensembl chr 9:61,475,517...61,502,469 		JBrowse link
maturation of 5S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136 		JBrowse link
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007121.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:259,826,698...259,827,548 JBrowse link
G AABR07027819.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr17:43,254,214...43,255,377 JBrowse link
G AABR07029262.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:18,291,363...18,292,163 JBrowse link
G AABR07030630.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:93,364,092...93,364,568 JBrowse link
G AABR07049918.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 5:139,195,914...139,196,714 JBrowse link
G AC128901.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:148,270,351...148,271,151 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401 		JBrowse link
G ENSRNOG00000067069 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:71,346,292...71,347,142 JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687 		JBrowse link
G LOC134483817 large ribosomal subunit protein eL8-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr20:40,814,078...40,814,928 JBrowse link
G LOC134486107 large ribosomal subunit protein eL8-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:57,334,747...57,335,597 JBrowse link
G Mak16 MAK16 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388 		JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rpf2l1 ribosome production factor 2 homolog like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:134,287,529...134,288,901
Ensembl chr 6:134,287,818...134,288,702 		JBrowse link
G Rpl7a ribosomal protein L7A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:10,239,026...10,241,703
Ensembl chr 3:10,239,001...10,241,716
Ensembl chr18:10,239,001...10,241,716 		JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370 		JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008724.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:70,904,506...70,905,278 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
IBA
IEA
ISS		 (PMID:17353269)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:17353269 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G ENSRNOG00000064315 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:33,274,509...33,275,597 JBrowse link
G ENSRNOG00000067266 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:165,188,105...165,188,942 JBrowse link
G ENSRNOG00000070052 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:73,132,657...73,133,891 JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Gtpbp4 GTP binding protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25190460)
GO_REF:0000107		 RGD
Ensembl		 PMID:25190460 GO_REF:0000107 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009 		JBrowse link
G LOC103694242 60S ribosomal protein L7 pseudogene involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:32,995,281...32,996,164
Ensembl chr16:32,995,363...32,996,204
Ensembl chr16:32,995,363...32,996,204 		JBrowse link
G LOC120093238 60S ribosomal protein L35-like involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:40,423,594...40,425,165
Ensembl chr 6:40,423,832...40,424,203 		JBrowse link
G Pak1ip1 PAK1 interacting protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:23,742,217...23,753,325
Ensembl chr17:23,741,414...23,753,324 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:25190460)
GO_REF:0000033
GO_REF:0000104
(PMID:16738141), (PMID:17353269)		 UniProt
RGD
GO_Central		 PMID:16738141 PMID:17353269 PMID:25190460 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,746,996...69,782,656
Ensembl chr10:69,748,789...69,790,475 		JBrowse link
G Ppan peter pan homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,423,908...19,427,941
Ensembl chr 8:19,423,961...19,427,938 		JBrowse link
G Rbm34 RNA binding motif protein 34 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:54,936,516...54,956,810
Ensembl chr19:54,936,531...54,956,715 		JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509 		JBrowse link
G Rpl35 ribosomal protein L35 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Rpl35-ps8 ribosomal protein L35, pseudogene 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:18,099,852...18,100,291
Ensembl chr  X:18,099,866...18,100,291 		JBrowse link
G Rpl35l1 ribosomal protein L35 like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr18:23,159,401...23,159,843
Ensembl chr18:23,159,441...23,159,812 		JBrowse link
G Rpl35l2 ribosomal protein L35 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:30,634,173...30,634,690
Ensembl chr 8:30,634,325...30,634,690 		JBrowse link
G Rpl7 ribosomal protein L7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110 		JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000104
(PMID:16043514), (PMID:17353269)		 UniProt
GO_Central
RGD		 PMID:16043514 PMID:17353269 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 9:61,475,498...61,502,762
Ensembl chr 9:61,475,517...61,502,469 		JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475
Ensembl chr10:69,748,789...69,790,475 		JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960 		JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx52 DExD-box helicase 52 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:68,824,594...68,847,400
Ensembl chr10:68,824,645...68,848,266 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Lsm6l1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484 		JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815 		JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO
IBA		 (PMID:22916032), (PMID:37246770)
GO_REF:0000033		 RGD
GO_Central		 PMID:22916032 PMID:37246770 GO_REF:0000033 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677 		JBrowse link
G Nol7 nucleolar protein 7 involved_in ISO (PMID:37246770) RGD PMID:37246770 NCBI chr17:21,303,650...21,306,924
Ensembl chr17:21,302,624...21,307,431 		JBrowse link
G Nop14 NOP14 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:76,081,313...76,102,454
Ensembl chr14:76,080,793...76,102,453 		JBrowse link
G Riok1 RIO kinase 1 involved_in ISO
IBA		 (PMID:22072790)
GO_REF:0000033		 RGD
GO_Central		 PMID:22072790 GO_REF:0000033 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900 		JBrowse link
G Riok2 RIO kinase 2 involved_in ISO
IBA		 (PMID:19564402)
GO_REF:0000033		 RGD
GO_Central		 PMID:19564402 GO_REF:0000033 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512 		JBrowse link
G Riok3 RIO kinase 3 involved_in ISO
IBA		 (PMID:22418843)
GO_REF:0000033		 RGD
GO_Central		 PMID:22418843 GO_REF:0000033 NCBI chr18:3,327,776...3,353,350
Ensembl chr18:3,327,776...3,353,343 		JBrowse link
G Rps14 ribosomal protein S14 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
Ensembl chr 7:80,480,951...80,486,508 		JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps28-ps4 ribosomal protein S28, pseudogene 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
Ensembl chr16:12,825,606...12,825,815 		JBrowse link
G Rps28-ps5 ribosomal protein S28, pseudogene 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:94,937,477...94,937,817
Ensembl chr14:94,937,482...94,937,815
Ensembl chr16:94,937,482...94,937,815 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473 		JBrowse link
G Srfbp1 serum response factor binding protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:45,920,389...45,945,385
Ensembl chr18:45,920,446...45,942,515 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:14,257,161...14,259,562
Ensembl chr10:14,257,171...14,259,561 		JBrowse link
G Utp4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550 		JBrowse link
G Wdr3 WD repeat domain 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432 		JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17242206)		 Ensembl
RGD		 PMID:17242206 GO_REF:0000107 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339 		JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142 		JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G LOC102548369 40S ribosomal protein S16-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:92,259,763...92,260,218
Ensembl chr15:92,259,763...92,260,203 		JBrowse link
G LOC297756 ribosomal protein S8-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:3,392,846...3,393,523
Ensembl chr 5:3,389,210...3,393,500 		JBrowse link
G Ngdn neuroguidin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654 		JBrowse link
G Nol10 nucleolar protein 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353 		JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640 		JBrowse link
G Rps16 ribosomal protein S16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
Ensembl chr19:83,643,130...83,646,206 		JBrowse link
G Rps16l1 ribosomal protein S16 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:21,494,155...21,494,684
Ensembl chr 3:21,494,203...21,494,676
Ensembl chr19:21,494,203...21,494,676 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
Ensembl chr 7:80,480,951...80,486,508 		JBrowse link
G Rps8 ribosomal protein S8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268 		JBrowse link
G Rps8-ps17 ribosomal protein S8, pseudogene 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,586,109...98,586,784
Ensembl chr 3:98,586,108...98,586,808 		JBrowse link
G Rps8l1 ribosomal protein S8 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:83,759,360...83,760,027
Ensembl chr17:83,759,369...83,760,019 		JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,308,956...14,316,959
Ensembl chr 9:14,308,982...14,316,110 		JBrowse link
G Slx9 SLX9 ribosome biogenesis factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:11,114,632...11,147,532
Ensembl chr20:11,114,589...11,147,521 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
G Tsr2 TSR2, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:20,064,102...20,072,673
Ensembl chr  X:20,064,103...20,072,620 		JBrowse link
G Utp25 UTP25 small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662 		JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396 		JBrowse link
G Utp4 UTP4 small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550 		JBrowse link
G Utp6 UTP6 small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:64,897,321...64,927,997
Ensembl chr10:64,897,328...64,927,997 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Wdr46 WD repeat domain 46 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,937,845...4,945,796
Ensembl chr20:4,937,847...4,946,535 		JBrowse link
negative regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:26867678) RGD PMID:26867678 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
positive regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751 		JBrowse link
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 2:38,343,086...38,368,242
Ensembl chr 2:38,354,854...38,368,227 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G Riok1 RIO kinase 1 involved_in ISO (PMID:22072790) RGD PMID:22072790 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900 		JBrowse link
G Riok2 RIO kinase 2 involved_in ISO (PMID:19564402) RGD PMID:19564402 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISO
ISS		 (PMID:26867678)
GO_REF:0000024		 RGD
UniProt		 PMID:26867678 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Utp15 UTP15, small subunit processome component involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Wdr75 WD repeat domain 75 involved_in ISO
IBA		 (PMID:17699751)
GO_REF:0000033		 RGD
GO_Central		 PMID:17699751 GO_REF:0000033 NCBI chr 9:47,903,214...47,933,399
Ensembl chr 9:47,903,200...47,933,399 		JBrowse link
regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl18 methyltransferase 18, RPL3 N3(tau)-histidine involved_in ISS
ISO		 GO_REF:0000024
(PMID:33693809)		 UniProt
RGD		 PMID:33693809 GO_REF:0000024 NCBI chr13:76,345,888...76,348,798
Ensembl chr13:76,345,957...76,348,836 		JBrowse link
G Ncl nucleolin IDA RGD PMID:2049089 RGD:9588272 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:19208757)
(PMID:29273634)		 RGD PMID:19208757 PMID:29273634 NCBI chr10:103,497,349...103,528,877
Ensembl chr10:103,497,349...103,528,877 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:31815440) RGD PMID:31815440 NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
GO_REF:0000033		 RGD
GO_Central		 PMID:25851604 GO_REF:0000033 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,095,920...61,125,421
Ensembl chr10:61,095,952...61,102,630 		JBrowse link
rRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18438418)		 UniProt
RGD		 PMID:18438418 GO_REF:0000024 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Rexo1 RNA exonuclease 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:9,154,050...9,174,035
Ensembl chr 7:9,154,061...9,173,454 		JBrowse link
G Rexo1l1-ps1 REX1, RNA exonuclease 1 homolog-like 1, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,834,049...138,838,838
Ensembl chr 2:138,834,559...138,837,083 		JBrowse link
G Rexo5 RNA exonuclease 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:174,168,633...174,264,526
Ensembl chr 1:174,168,694...174,241,486 		JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540 		JBrowse link
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:51,111,831...51,118,253
Ensembl chr 8:51,113,397...51,118,308 		JBrowse link
G Mettl15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine involved_in ISO
IBA		 (PMID:31665743), (PMID:32371392)
GO_REF:0000033		 RGD
GO_Central		 PMID:31665743 PMID:32371392 GO_REF:0000033 NCBI chr 3:95,586,855...95,764,392
Ensembl chr 3:95,586,850...95,764,397 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO
IBA		 (PMID:31428936), (PMID:31722427)
(PMID:31722427)
GO_REF:0000033		 RGD
GO_Central		 PMID:31428936 PMID:31722427 GO_REF:0000033 NCBI chr12:21,293,637...21,299,319
Ensembl chr12:21,293,645...21,299,272 		JBrowse link
rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
GO_REF:0000033		 RGD
GO_Central		 PMID:25851604 GO_REF:0000033 NCBI chr 2:38,343,086...38,368,242
Ensembl chr 2:38,354,854...38,368,227 		JBrowse link
G Fbl fibrillarin involved_in ISO
IBA
ISS		 (PMID:30540930)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:30540930 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in IBA
ISO		 GO_REF:0000033
(PMID:32783360), (PMID:35033535)
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:35033535)		 GO_Central
RGD		 PMID:31328227 PMID:32217665 PMID:32783360 PMID:33357433 PMID:35033535 GO_REF:0000033 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO
IBA		 (PMID:23022348)
(PMID:24516400)
GO_REF:0000033		 RGD
GO_Central		 PMID:23022348 PMID:24516400 GO_REF:0000033 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IEA
IBA
ISO
ISS		 GO_REF:0000104
GO_REF:0000033
(PMID:19356719)
GO_REF:0000024
(PMID:31251801)		 UniProt
GO_Central
RGD		 PMID:19356719 PMID:31251801 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709 		JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227), (PMID:35033535) RGD PMID:31328227 PMID:35033535 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 involved_in IEA
IBA
ISS
ISO		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
(PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605)		 InterPro
GO_Central
Ensembl
UniProt
RGD		 PMID:30531910 PMID:31328227 PMID:31695039 PMID:31799605 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:58,165,467...58,207,071
Ensembl chr14:58,165,460...58,206,743 		JBrowse link
rRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2446500|MGI:3849598|MGI:3849599 (PMID:15240872), (PMID:23726835)		 GO_Central
RGD		 PMID:15240872 PMID:23726835 GO_REF:0000033
G Nhp2 NHP2 ribonucleoprotein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO
IEA		 (PMID:27974379)
GO_REF:0000107		 RGD
Ensembl		 PMID:27974379 GO_REF:0000107 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IDA RGD PMID:12446766 RGD:633420
G Gar1 GAR1 ribonucleoprotein involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:12446766 GO_REF:0000033, RGD:633420 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        primary metabolic process 10582
          RNA processing 969
            rRNA processing 238
              chloroplast rRNA processing 0
              cleavage of bicistronic rRNA transcript (SSU-rRNA, LSU-rRNA) 0
              endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
              endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) + 0
              endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 17
              endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 5S) + 0
              maturation of 2S rRNA + 0
              maturation of 4.5S rRNA 0
              maturation of 5.8S rRNA + 36
              maturation of 5S rRNA + 1
              maturation of LSU-rRNA + 45
              maturation of SSU-rRNA + 59
              negative regulation of rRNA processing 1
              positive regulation of rRNA processing 10
              rRNA 3'-end processing + 15
              rRNA 5'-end processing + 3
              rRNA modification + 29
              regulation of rRNA processing + 15
              snoRNA release from pre-rRNA 0
Path 2
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        primary metabolic process 10582
          nucleobase-containing compound metabolic process 5795
            nucleobase-containing compound biosynthetic process 4725
              nucleic acid biosynthetic process 4448
                RNA biosynthetic process 4331
                  RNA processing 969
                    rRNA processing 238
                      chloroplast rRNA processing 0
                      cleavage of bicistronic rRNA transcript (SSU-rRNA, LSU-rRNA) 0
                      endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
                      endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) + 0
                      endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 17
                      endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 5S) + 0
                      maturation of 2S rRNA + 0
                      maturation of 4.5S rRNA 0
                      maturation of 5.8S rRNA + 36
                      maturation of 5S rRNA + 1
                      maturation of LSU-rRNA + 45
                      maturation of SSU-rRNA + 59
                      negative regulation of rRNA processing 1
                      positive regulation of rRNA processing 10
                      rRNA 3'-end processing + 15
                      rRNA 5'-end processing + 3
                      rRNA modification + 29
                      regulation of rRNA processing + 15
                      snoRNA release from pre-rRNA 0
paths to the root