Cpeb1 (cytoplasmic polyadenylation element binding protein 1) - Rat Genome Database

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Gene: Cpeb1 (cytoplasmic polyadenylation element binding protein 1) Chinchilla lanigera
Analyze
Symbol: Cpeb1
Name: cytoplasmic polyadenylation element binding protein 1
RGD ID: 8890336
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA binding (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to hypoxia (ortholog); cellular response to insulin stimulus (ortholog); ASSOCIATED WITH amenorrhea (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); Bloom syndrome (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic polyadenylation element-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541613,981,657 - 14,039,705 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541613,963,300 - 14,038,691 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cpeb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541613,981,657 - 14,039,705 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541613,963,300 - 14,038,691 (+)NCBIChiLan1.0ChiLan1.0
CPEB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381582,543,201 - 82,648,795 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1582,543,201 - 82,648,861 (-)EnsemblGRCh38hg38GRCh38
GRCh371583,211,951 - 83,317,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361581,009,006 - 81,113,783 (-)NCBINCBI36Build 36hg18NCBI36
Build 341581,009,640 - 81,094,275NCBI
Celera1561,263,397 - 61,367,744 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1559,482,509 - 59,586,909 (-)NCBIHuRef
CHM1_11582,953,574 - 83,058,345 (-)NCBICHM1_1
T2T-CHM13v2.01580,407,439 - 80,513,020 (-)NCBIT2T-CHM13v2.0
Cpeb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39780,996,774 - 81,105,207 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl780,996,774 - 81,105,213 (-)EnsemblGRCm39 Ensembl
GRCm38781,347,026 - 81,458,001 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl781,347,026 - 81,455,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv37788,492,329 - 88,599,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36781,220,956 - 81,328,189 (-)NCBIMGSCv36mm8
Celera778,752,617 - 78,860,054 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Cpeb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,709,278 - 144,817,388 (-)NCBIGRCr8
mRatBN7.21135,300,048 - 135,407,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,300,461 - 135,409,760 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1143,215,210 - 143,321,813 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01150,384,623 - 150,491,225 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,297,567 - 143,404,159 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,171,457 - 143,278,485 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,171,264 - 143,278,485 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01144,114,219 - 144,220,842 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41137,556,766 - 137,666,929 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11137,635,181 - 137,745,334 (-)NCBI
Celera1127,351,540 - 127,457,741 (-)NCBICelera
Cytogenetic Map1q31NCBI
CPEB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21673,237,912 - 73,342,404 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11577,398,584 - 77,503,074 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01562,949,264 - 63,053,994 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11580,443,096 - 80,546,163 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1580,443,096 - 80,526,948 (-)Ensemblpanpan1.1panPan2
CPEB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1354,405,140 - 54,499,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl354,405,717 - 54,500,221 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,046,122 - 57,140,348 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0354,824,324 - 54,918,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,824,563 - 54,919,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,344,656 - 54,439,210 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,553,850 - 54,648,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,896,337 - 54,990,718 (-)NCBIUU_Cfam_GSD_1.0
Cpeb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,039,489 - 129,118,232 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648317,216,213 - 17,294,534 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648317,216,288 - 17,296,430 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,304,472 - 52,383,732 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,329,054 - 52,382,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,815,438 - 57,867,976 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1293,005,891 - 3,106,732 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl293,006,532 - 3,106,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605943,983,927 - 44,084,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476818,386,415 - 18,468,879 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014048   ⟹   ENSCLAP00000013892
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541613,981,657 - 14,039,705 (+)Ensembl
RefSeq Acc Id: XM_005381479   ⟹   XP_005381536
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541613,963,300 - 14,038,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005381480   ⟹   XP_005381537
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541613,963,301 - 14,038,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005381481   ⟹   XP_005381538
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541613,963,303 - 14,038,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005381482   ⟹   XP_005381539
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541613,963,304 - 14,038,691 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381536 (Get FASTA)   NCBI Sequence Viewer  
  XP_005381537 (Get FASTA)   NCBI Sequence Viewer  
  XP_005381538 (Get FASTA)   NCBI Sequence Viewer  
  XP_005381539 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013892
  ENSCLAP00000013892.1
Reference Protein Sequences
RefSeq Acc Id: XP_005381536   ⟸   XM_005381479
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VFH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381537   ⟸   XM_005381480
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VFH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381538   ⟸   XM_005381481
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VFH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381539   ⟸   XM_005381482
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VFH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013892   ⟸   ENSCLAT00000014048
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014048 ENTREZGENE
  ENSCLAT00000014048.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP1_N UniProtKB/TrEMBL
  CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  CPEB1_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Cpeb1 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam CEBP1_N UniProtKB/TrEMBL
  CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2VFH9 ENTREZGENE, UniProtKB/TrEMBL