Rps17 (ribosomal protein S17) - Rat Genome Database

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Gene: Rps17 (ribosomal protein S17) Chinchilla lanigera
Analyze
Symbol: Rps17
Name: ribosomal protein S17
RGD ID: 8812617
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN erythrocyte homeostasis (ortholog); ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S17
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541614,039,596 - 14,042,908 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541614,039,596 - 14,042,908 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541614,039,596 - 14,042,908 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541614,039,596 - 14,042,908 (+)NCBIChiLan1.0ChiLan1.0
RPS17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381582,536,750 - 82,540,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1582,536,750 - 82,540,459 (-)EnsemblGRCh38hg38GRCh38
GRCh371583,205,501 - 83,209,208 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361580,608,216 - 80,611,920 (-)NCBINCBI36Build 36hg18NCBI36
Build 341581,002,558 - 81,006,259NCBI
Celera1561,370,488 - 61,374,192 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1559,476,061 - 59,479,765 (-)NCBIHuRef
CHM1_11582,947,123 - 82,950,917 (-)NCBICHM1_1
T2T-CHM13v2.01580,400,970 - 80,404,677 (-)NCBIT2T-CHM13v2.0
Rps17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39780,992,481 - 80,994,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl780,992,480 - 80,995,002 (-)EnsemblGRCm39 Ensembl
GRCm38781,342,733 - 81,345,234 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl781,342,732 - 81,345,254 (-)EnsemblGRCm38mm10GRCm38
MGSCv37788,487,619 - 88,490,120 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36781,216,246 - 81,218,727 (-)NCBIMGSCv36mm8
Celera778,747,907 - 78,750,409 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Rps17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,705,150 - 144,707,736 (-)NCBIGRCr8
mRatBN7.21135,295,920 - 135,298,506 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,785,286 - 97,785,756 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1135,295,919 - 135,298,535 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1143,210,677 - 143,213,263 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01150,380,090 - 150,382,676 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,293,034 - 143,295,620 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,167,329 - 143,169,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,167,362 - 143,169,657 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01144,109,686 - 144,112,272 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41137,552,232 - 137,554,817 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1127,347,007 - 127,349,593 (-)NCBICelera
Cytogenetic Map1q31NCBI
RPS17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21673,345,044 - 73,348,845 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11577,505,713 - 77,509,516 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01563,056,604 - 63,060,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11580,436,657 - 80,440,462 (-)NCBIpanpan1.1PanPan1.1panPan2
RPS17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1354,400,519 - 54,403,203 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl354,312,195 - 54,406,452 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,041,497 - 57,044,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0354,819,737 - 54,822,398 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,731,506 - 54,822,654 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,340,040 - 54,342,722 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,549,232 - 54,551,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,891,754 - 54,894,404 (-)NCBIUU_Cfam_GSD_1.0
Rps17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,119,947 - 129,123,390 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648317,210,952 - 17,214,735 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648317,211,129 - 17,214,509 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,386,036 - 52,390,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,386,342 - 52,389,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,871,901 - 57,874,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1293,109,426 - 3,113,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605943,976,872 - 43,981,009 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476818,381,906 - 18,385,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476818,381,906 - 18,385,708 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011110   ⟹   ENSCLAP00000010975
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541614,039,596 - 14,042,908 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011111   ⟹   ENSCLAP00000010976
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541614,039,896 - 14,042,861 (+)Ensembl
RefSeq Acc Id: XM_005381484   ⟹   XP_005381541
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541614,039,596 - 14,042,908 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381541 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010975
  ENSCLAP00000010975.1
  ENSCLAP00000010976.1
Reference Protein Sequences
RefSeq Acc Id: XP_005381541   ⟸   XM_005381484
- UniProtKB: A0A8C2V8S1 (UniProtKB/TrEMBL),   A0A8C2VBK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010975   ⟸   ENSCLAT00000011110
RefSeq Acc Id: ENSCLAP00000010976   ⟸   ENSCLAT00000011111


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007573 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011110 ENTREZGENE
  ENSCLAT00000011110.1 UniProtKB/TrEMBL
  ENSCLAT00000011111.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.60.20 UniProtKB/TrEMBL
InterPro Ribosomal_S17e UniProtKB/TrEMBL
  Ribosomal_S17e_CS UniProtKB/TrEMBL
  RPS17e-like_sf UniProtKB/TrEMBL
NCBI Gene LOC102008847 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S17 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S17 UniProtKB/TrEMBL
  PTHR10732 UniProtKB/TrEMBL
Pfam Ribosomal_S17e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S17E UniProtKB/TrEMBL
Superfamily-SCOP SSF116820 UniProtKB/TrEMBL
UniProt A0A8C2V8S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VBK3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Rps17  ribosomal protein S17  LOC102008847  40S ribosomal protein S17-like  Symbol and/or name change 5135510 APPROVED