Utp20 (UTP20 small subunit processome component) - Rat Genome Database

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Gene: Utp20 (UTP20 small subunit processome component) Chinchilla lanigera
Analyze
Symbol: Utp20
Name: UTP20 small subunit processome component
RGD ID: 8732538
Description: INVOLVED IN ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleolus (ortholog); plasma membrane (ortholog); small-subunit processome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small subunit processome component 20 homolog; UTP20, small subunit (SSU) processome component, homolog (yeast); UTP20, small subunit processome component
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,830,176 - 36,909,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,829,984 - 36,910,149 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Utp20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,830,176 - 36,909,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,829,984 - 36,910,149 (+)NCBIChiLan1.0ChiLan1.0
UTP20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,280,105 - 101,386,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,280,105 - 101,386,618 (+)EnsemblGRCh38hg38GRCh38
GRCh3712101,673,883 - 101,780,396 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,198,036 - 100,304,528 (+)NCBINCBI36Build 36hg18NCBI36
Celera12101,339,214 - 101,445,692 (+)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1298,734,067 - 98,840,479 (+)NCBIHuRef
CHM1_112101,639,865 - 101,746,373 (+)NCBICHM1_1
T2T-CHM13v2.012101,241,888 - 101,347,734 (+)NCBIT2T-CHM13v2.0
Utp20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,582,469 - 88,662,676 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,582,469 - 88,662,666 (-)EnsemblGRCm39 Ensembl
GRCm381088,746,607 - 88,826,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,746,607 - 88,826,804 (-)EnsemblGRCm38mm10GRCm38
MGSCv371088,209,352 - 88,289,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361088,175,667 - 88,256,613 (-)NCBIMGSCv36mm8
Celera1090,726,629 - 90,806,960 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1044.21NCBI
Utp20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8725,022,029 - 25,103,024 (-)NCBIGRCr8
mRatBN7.2723,134,630 - 23,215,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl723,134,637 - 23,215,632 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx725,129,194 - 25,210,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,291,898 - 27,372,560 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0727,068,936 - 27,149,757 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,296,360 - 29,378,105 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,296,963 - 29,378,080 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,399,165 - 29,480,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,419,625 - 25,501,987 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera720,293,710 - 20,374,246 (-)NCBICelera
Cytogenetic Map7q13NCBI
UTP20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,350,241 - 109,458,061 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,346,640 - 109,454,461 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01298,865,121 - 98,972,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,265,283 - 102,372,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,265,283 - 102,372,830 (+)Ensemblpanpan1.1panPan2
UTP20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,291,344 - 40,387,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,291,390 - 40,387,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1540,659,968 - 40,756,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01540,945,936 - 41,042,475 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1540,945,935 - 41,041,869 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,201,734 - 40,297,982 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,310,266 - 40,406,738 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,584,482 - 40,681,018 (+)NCBIUU_Cfam_GSD_1.0
Utp20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,587,839 - 19,682,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,598,308 - 12,693,514 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,598,178 - 12,693,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTP20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,813,717 - 82,913,155 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,810,700 - 82,913,176 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,806,041 - 86,907,727 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UTP20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,549,046 - 96,657,494 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,549,037 - 96,659,699 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037148,345,723 - 148,454,642 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Utp20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,526,831 - 6,603,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,526,692 - 6,603,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017026   ⟹   ENSCLAP00000016861
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540536,830,176 - 36,909,967 (+)Ensembl
RefSeq Acc Id: XM_005374546   ⟹   XP_005374603
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540536,829,984 - 36,910,149 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374603 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016861
  ENSCLAP00000016861.1
Reference Protein Sequences
RefSeq Acc Id: XP_005374603   ⟸   XM_005374546
- UniProtKB: A0A8C2VK88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016861   ⟸   ENSCLAT00000017026
Protein Domains
U3 small nucleolar RNA-associated protein 20 C-   U3 small nucleolar RNA-associated protein 20 N-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011569 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017026 ENTREZGENE
  ENSCLAT00000017026.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  DRIM UniProtKB/TrEMBL
  UTP20_C UniProtKB/TrEMBL
NCBI Gene Utp20 ENTREZGENE
PANTHER SMALL SUBUNIT PROCESSOME COMPONENT 20 HOMOLOG UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DRIM UniProtKB/TrEMBL
  DUF6700 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2VK88 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Utp20  UTP20 small subunit processome component    UTP20, small subunit processome component  Symbol and/or name change 5135510 APPROVED
2016-08-03 Utp20  UTP20, small subunit processome component    UTP20, small subunit (SSU) processome component, homolog (yeast)  Symbol and/or name change 5135510 APPROVED