Snip1 (Smad nuclear interacting protein 1) - Rat Genome Database

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Gene: Snip1 (Smad nuclear interacting protein 1) Chinchilla lanigera
Analyze
Symbol: Snip1
Name: Smad nuclear interacting protein 1
RGD ID: 9034594
Description: ENCODES a protein that exhibits transcription regulator inhibitor activity (ortholog); INVOLVED IN miRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH ARTERIAL DISSECTION (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: smad nuclear-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,353,182 - 15,365,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,352,080 - 15,365,545 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,353,182 - 15,365,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,352,080 - 15,365,545 (-)NCBIChiLan1.0ChiLan1.0
SNIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,534,449 - 37,554,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,534,449 - 37,554,293 (-)EnsemblGRCh38hg38GRCh38
GRCh37138,000,050 - 38,019,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,774,729 - 37,792,490 (-)NCBINCBI36Build 36hg18NCBI36
Celera136,280,132 - 36,297,891 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,116,864 - 36,136,791 (-)NCBIHuRef
CHM1_1138,116,178 - 38,136,124 (-)NCBICHM1_1
T2T-CHM13v2.0137,399,180 - 37,419,043 (-)NCBIT2T-CHM13v2.0
Snip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,960,465 - 124,967,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,960,465 - 124,967,835 (+)EnsemblGRCm39 Ensembl
GRCm384125,066,672 - 125,074,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4125,066,672 - 125,074,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,743,937 - 124,751,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,568,997 - 124,576,339 (+)NCBIMGSCv36mm8
Celera4123,387,926 - 123,395,275 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.99NCBI
Snip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,613,028 - 142,620,502 (+)NCBIGRCr8
mRatBN7.25137,328,371 - 137,335,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,328,371 - 137,335,845 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5140,032,513 - 140,039,986 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,802,531 - 141,810,004 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,809,697 - 141,817,170 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,275,273 - 19,282,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5143,063,099 - 143,070,884 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,831,845 - 146,839,471 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,409,078 - 144,416,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15144,419,070 - 144,426,979 (+)NCBI
Celera5135,846,577 - 135,854,025 (+)NCBICelera
Cytogenetic Map5q36NCBI
SNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,284,872 - 189,302,648 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,413,926 - 188,431,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,807,488 - 36,827,347 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,156,936 - 38,176,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,155,375 - 38,176,803 (-)Ensemblpanpan1.1panPan2
SNIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,924,035 - 4,934,565 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,924,178 - 4,933,724 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,170,972 - 5,181,500 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,058,195 - 5,068,724 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,058,250 - 5,068,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,917,372 - 4,927,894 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,983,733 - 4,994,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,000,424 - 5,010,952 (+)NCBIUU_Cfam_GSD_1.0
Snip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,935,987 - 53,953,447 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,760,766 - 19,778,265 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,760,653 - 19,778,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,597,059 - 93,612,150 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,597,050 - 93,612,169 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,315,272 - 95,327,402 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,315,297 - 95,336,101 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,479,232 - 21,496,625 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476420,280,055 - 20,292,916 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020838   ⟹   ENSCLAP00000020640
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545215,353,182 - 15,365,459 (-)Ensembl
RefSeq Acc Id: XM_005395208   ⟹   XP_005395265
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545215,352,080 - 15,365,545 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395265 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020640
  ENSCLAP00000020640.1
Reference Protein Sequences
RefSeq Acc Id: XP_005395265   ⟸   XM_005395208
- UniProtKB: A0A8C2VWR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020640   ⟸   ENSCLAT00000020838
Protein Domains
FHA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020838 ENTREZGENE
  ENSCLAT00000020838.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Snip1 ENTREZGENE
PANTHER KANADAPTIN-RELATED UniProtKB/TrEMBL
  NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A8C2VWR7 ENTREZGENE, UniProtKB/TrEMBL