Tdrd12 (tudor domain containing 12) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tdrd12 (tudor domain containing 12) Chinchilla lanigera
Analyze
Symbol: Tdrd12
Name: tudor domain containing 12
RGD ID: 9068311
Description: INVOLVED IN fertilization (ortholog); male meiotic nuclear division (ortholog); piRNA processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN PET complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative ATP-dependent RNA helicase TDRD12
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,141,077 - 5,275,748 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554685,201,216 - 5,277,062 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
PET complex  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tdrd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,141,077 - 5,275,748 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554685,201,216 - 5,277,062 (-)NCBIChiLan1.0ChiLan1.0
TDRD12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,719,767 - 32,829,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1932,719,753 - 32,829,580 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,210,673 - 33,320,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361937,902,499 - 38,004,006 (+)NCBINCBI36Build 36hg18NCBI36
Celera1929,904,299 - 29,975,332 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,713,951 - 29,784,334 (+)NCBIHuRef
CHM1_11933,211,966 - 33,282,865 (+)NCBICHM1_1
T2T-CHM13v2.01935,238,502 - 35,348,355 (+)NCBIT2T-CHM13v2.0
Tdrd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,166,366 - 35,237,206 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,168,523 - 35,237,170 (-)EnsemblGRCm39 Ensembl
GRCm38735,466,941 - 35,537,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,469,098 - 35,537,745 (-)EnsemblGRCm38mm10GRCm38
MGSCv37736,278,629 - 36,322,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,202,370 - 35,246,442 (-)NCBIMGSCv36mm8
Celera730,622,196 - 30,666,614 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.37NCBI
Tdrd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,270,280 - 97,342,637 (-)NCBIGRCr8
mRatBN7.2188,133,271 - 88,205,729 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,133,373 - 88,205,705 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0191,739,126 - 91,811,577 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,740,933 - 91,811,547 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,865,962 - 92,939,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4188,001,744 - 88,072,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.4188,009,688 - 88,027,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera182,483,162 - 82,555,576 (-)NCBICelera
Cytogenetic Map1q21NCBI
TDRD12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22038,702,377 - 38,802,716 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11940,688,238 - 40,801,872 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01929,638,686 - 29,750,249 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,386,216 - 38,489,791 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,386,557 - 38,489,791 (+)Ensemblpanpan1.1panPan2
TDRD12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,229,721 - 119,290,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,231,485 - 119,290,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,629,868 - 118,700,287 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,830,747 - 119,901,232 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,832,505 - 119,900,715 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,393,854 - 119,464,441 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,014,335 - 119,084,954 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,074,270 - 120,144,554 (-)NCBIUU_Cfam_GSD_1.0
Tdrd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,630,237 - 8,698,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,947,425 - 3,015,549 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,947,069 - 3,015,549 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,589,556 - 42,665,845 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,589,557 - 42,667,946 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,034,437 - 38,106,866 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,772,397 - 27,874,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl627,783,408 - 27,867,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,356,529 - 5,461,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247947,641,387 - 7,712,126 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247947,641,105 - 7,740,091 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017875   ⟹   ENSCLAP00000017700
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554685,141,077 - 5,275,748 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017876   ⟹   ENSCLAP00000017701
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554685,202,579 - 5,275,748 (-)Ensembl
RefSeq Acc Id: XM_005400080   ⟹   XP_005400137
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554685,201,216 - 5,277,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400081   ⟹   XP_005400138
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554685,201,216 - 5,277,049 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400082   ⟹   XP_005400139
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554685,201,216 - 5,277,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400083   ⟹   XP_005400140
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554685,201,216 - 5,277,049 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400084   ⟹   XP_005400141
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554685,212,910 - 5,277,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400085   ⟹   XP_005400142
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554685,229,193 - 5,277,062 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005400140   ⟸   XM_005400083
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VSI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400139   ⟸   XM_005400082
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VSI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400138   ⟸   XM_005400081
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VM41 (UniProtKB/TrEMBL),   A0A8C2VSI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400137   ⟸   XM_005400080
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VSI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400141   ⟸   XM_005400084
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005400142   ⟸   XM_005400085
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCLAP00000017700   ⟸   ENSCLAT00000017875
RefSeq Acc Id: ENSCLAP00000017701   ⟸   ENSCLAT00000017876
Protein Domains
CS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012138 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017875.1 UniProtKB/TrEMBL
  ENSCLAT00000017876 ENTREZGENE
  ENSCLAT00000017876.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/TrEMBL
  2.60.40.790 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro CS_dom UniProtKB/TrEMBL
  DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
NCBI Gene Tdrd12 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE TDRD12-RELATED UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
PROSITE PS51203 UniProtKB/TrEMBL
Superfamily-SCOP SSF49764 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8C2VM41 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VSI9 ENTREZGENE, UniProtKB/TrEMBL