Snrnp200 (small nuclear ribonucleoprotein U5 subunit 200) - Rat Genome Database

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Gene: Snrnp200 (small nuclear ribonucleoprotein U5 subunit 200) Chinchilla lanigera
Analyze
Symbol: Snrnp200
Name: small nuclear ribonucleoprotein U5 subunit 200
RGD ID: 8989355
Description: ENCODES a protein that exhibits helicase activity (ortholog); identical protein binding (ortholog); RNA helicase activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein 200kDa (U5); U5 small nuclear ribonucleoprotein 200 kDa helicase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,828,943 - 3,856,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,828,943 - 3,856,059 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrnp200
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,828,943 - 3,856,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,828,943 - 3,856,059 (-)NCBIChiLan1.0ChiLan1.0
SNRNP200
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,274,338 - 96,305,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,274,338 - 96,321,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37296,940,076 - 96,971,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,303,801 - 96,334,988 (-)NCBINCBI36Build 36hg18NCBI36
Build 34296,361,948 - 96,393,135NCBI
Celera291,381,262 - 91,412,485 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,901,571 - 90,932,785 (-)NCBIHuRef
CHM1_1296,944,413 - 96,975,645 (-)NCBICHM1_1
T2T-CHM13v2.0296,780,946 - 96,812,154 (-)NCBIT2T-CHM13v2.0
Snrnp200
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,050,306 - 127,082,373 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,050,306 - 127,082,371 (+)EnsemblGRCm39 Ensembl
GRCm382127,208,386 - 127,240,453 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,208,386 - 127,240,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv372127,034,140 - 127,066,187 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,899,845 - 126,931,892 (+)NCBIMGSCv36mm8
Celera2128,447,628 - 128,479,812 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.84NCBI
Snrnp200
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,882,173 - 134,911,512 (+)NCBIGRCr8
mRatBN7.23114,428,854 - 114,458,194 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,428,854 - 114,458,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,320,397 - 118,349,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,915,943 - 126,945,291 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,576,324 - 124,605,671 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,640,324 - 119,669,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,640,298 - 119,669,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,165,542 - 126,194,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,708,628 - 114,738,549 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3113,269,406 - 113,298,872 (+)NCBICelera
Cytogenetic Map3q36NCBI
SNRNP200
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21232,003,221 - 32,034,115 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A32,005,981 - 32,036,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A103,010,083 - 103,040,958 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,197,137 - 97,228,511 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,197,137 - 97,228,511 (-)Ensemblpanpan1.1panPan2
SNRNP200
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,472,638 - 34,505,332 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,472,767 - 34,505,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,243,105 - 34,275,448 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,244,241 - 35,276,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,244,268 - 35,277,056 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,373,226 - 34,405,881 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,432,063 - 34,474,517 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,648,453 - 34,681,099 (+)NCBIUU_Cfam_GSD_1.0
SNRNP200
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,929,136 - 46,960,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,929,066 - 46,960,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,025,370 - 49,042,952 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP200
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114693,873 - 724,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14694,126 - 724,208 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,120,462 - 168,150,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp200
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,351,373 - 2,378,159 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,351,476 - 2,378,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005907   ⟹   ENSCLAP00000005806
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554703,828,943 - 3,856,236 (-)Ensembl
RefSeq Acc Id: XM_005400656   ⟹   XP_005400713
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554703,828,943 - 3,856,059 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400713 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005806
  ENSCLAP00000005806.1
Reference Protein Sequences
RefSeq Acc Id: XP_005400713   ⟸   XM_005400656
- UniProtKB: A0A8C2YKQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005806   ⟸   ENSCLAT00000005907
Protein Domains
Helicase ATP-binding   Helicase C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004116 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005907 ENTREZGENE
  ENSCLAT00000005907.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/TrEMBL
  Sec63 N-terminal domain-like domain UniProtKB/TrEMBL
InterPro Brr2_helicase_PWI UniProtKB/TrEMBL
  BRR2_plug UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sec63-dom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Snrnp200 ENTREZGENE
PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED UniProtKB/TrEMBL
  U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE UniProtKB/TrEMBL
Pfam BRR2_plug UniProtKB/TrEMBL
  DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Helicase_PWI UniProtKB/TrEMBL
  Sec63 UniProtKB/TrEMBL
PIRSF BRR2 UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  Sec63 UniProtKB/TrEMBL
Superfamily-SCOP Sec63 N-terminal domain-like UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A8C2YKQ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Snrnp200  small nuclear ribonucleoprotein U5 subunit 200    small nuclear ribonucleoprotein 200kDa (U5)  Symbol and/or name change 5135510 APPROVED