Qki (QKI, KH domain containing RNA binding) - Rat Genome Database

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Gene: Qki (QKI, KH domain containing RNA binding) Chinchilla lanigera
Analyze
Symbol: Qki
Name: QKI, KH domain containing RNA binding
RGD ID: 8853293
Description: ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); axon ensheathment (ortholog); brain development (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH demyelinating disease (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: QKI, KH domain containing, RNA binding
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543917,925,229 - 18,079,727 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543917,925,205 - 18,079,727 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
synapse  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Qki
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543917,925,229 - 18,079,727 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543917,925,205 - 18,079,727 (-)NCBIChiLan1.0ChiLan1.0
QKI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386163,414,718 - 163,578,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6163,414,000 - 163,578,592 (+)EnsemblGRCh38hg38GRCh38
GRCh376163,835,750 - 163,999,624 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366163,755,665 - 163,914,886 (+)NCBINCBI36hg18NCBI36
Celera6164,606,149 - 164,729,418 (+)NCBI
Cytogenetic Map6q26NCBI
HuRef6161,290,590 - 161,453,987 (+)NCBIHuRef
CHM1_16164,097,893 - 164,261,842 (+)NCBICHM1_1
T2T-CHM13v2.06164,779,884 - 164,943,697 (+)NCBI
Qki
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391710,425,400 - 10,538,706 (-)NCBIGRCm39mm39
GRCm39 Ensembl1710,421,530 - 10,538,783 (-)Ensembl
GRCm381710,206,471 - 10,319,361 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1710,202,601 - 10,319,854 (-)EnsemblGRCm38mm10GRCm38
MGSCv371710,399,336 - 10,512,226 (-)NCBIGRCm37mm9NCBIm37
MGSCv361710,053,536 - 10,163,211 (-)NCBImm8
Celera1710,252,038 - 10,337,960 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map177.75NCBI
Qki
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2150,387,698 - 50,501,568 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl150,387,698 - 50,498,831 (+)Ensembl
Rnor_6.0150,983,647 - 51,050,692 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl150,828,134 - 51,052,340 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0152,104,976 - 52,207,885 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4144,922,562 - 45,025,572 (+)NCBIRGSC3.4rn4RGSC3.4
Celera146,204,164 - 46,271,210 (+)NCBICelera
Cytogenetic Map1q11NCBI
QKI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16166,398,884 - 166,517,389 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v06161,361,413 - 161,523,414 (+)NCBIMhudiblu_PPA_v0panPan3
QKI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1151,800,294 - 51,956,891 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl151,800,309 - 51,952,714 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,642,145 - 52,797,414 (+)NCBI
ROS_Cfam_1.0151,975,526 - 52,138,964 (+)NCBI
ROS_Cfam_1.0 Ensembl151,977,027 - 52,136,022 (+)Ensembl
UMICH_Zoey_3.1151,867,832 - 52,023,107 (+)NCBI
UNSW_CanFamBas_1.0151,727,887 - 51,883,146 (+)NCBI
UU_Cfam_GSD_1.0152,356,356 - 52,511,535 (+)NCBI
Qki
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946146,649,733 - 146,750,270 (+)NCBI
SpeTri2.0NW_00493648913,901,066 - 14,000,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
QKI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14,735,514 - 4,883,392 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114,732,575 - 4,883,386 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.216,380,698 - 6,486,326 (-)NCBISscrofa10.2Sscrofa10.2susScr3
QKI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11391,045,167 - 91,206,190 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1391,045,209 - 91,208,471 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604062,921,663 - 63,087,940 (+)NCBIVero_WHO_p1.0
Qki
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478515,739,187 - 15,845,024 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462478515,738,231 - 15,845,051 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009062   ⟹   ENSCLAP00000008934
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543917,925,229 - 18,079,727 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000009063   ⟹   ENSCLAP00000008935
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543917,931,607 - 18,035,965 (-)Ensembl
RefSeq Acc Id: XM_013517307   ⟹   XP_013372761
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543917,925,205 - 18,079,727 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013372761 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013372761   ⟸   XM_013517307
- Sequence:
RefSeq Acc Id: ENSCLAP00000008935   ⟸   ENSCLAT00000009063
RefSeq Acc Id: ENSCLAP00000008934   ⟸   ENSCLAT00000009062
Protein Domains
KH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006238 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000008934 ENTREZGENE
  ENSCLAP00000008934.1 UniProtKB/TrEMBL
  ENSCLAP00000008935.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009062 ENTREZGENE
  ENSCLAT00000009062.1 UniProtKB/TrEMBL
  ENSCLAT00000009063.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
InterPro BBP-like UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  Quaking_NLS UniProtKB/TrEMBL
NCBI Gene Qki ENTREZGENE
PANTHER PTHR11208 UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
  Quaking_NLS UniProtKB/TrEMBL
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A8C2V3U0_CHILA UniProtKB/TrEMBL
  A0A8C2V7K9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Qki  QKI, KH domain containing RNA binding    QKI, KH domain containing, RNA binding  Symbol and/or name change 5135510 APPROVED