Nol9 (nucleolar protein 9) - Rat Genome Database

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Gene: Nol9 (nucleolar protein 9) Chinchilla lanigera
Analyze
Symbol: Nol9
Name: nucleolar protein 9
RGD ID: 8754511
Description: ENCODES a protein that exhibits ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity (ortholog); INVOLVED IN maturation of 5.8S rRNA (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polynucleotide 5'-hydroxyl-kinase NOL9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554866,066,136 - 6,079,117 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554866,066,093 - 6,079,756 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nol9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554866,066,136 - 6,079,117 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554866,066,093 - 6,079,756 (+)NCBIChiLan1.0ChiLan1.0
NOL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,521,347 - 6,554,513 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,521,347 - 6,554,513 (-)EnsemblGRCh38hg38GRCh38
GRCh3716,581,407 - 6,614,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,507,792 - 6,537,168 (-)NCBINCBI36Build 36hg18NCBI36
Celera15,695,263 - 5,728,526 (-)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,729,135 - 5,762,403 (-)NCBIHuRef
CHM1_116,570,077 - 6,603,335 (-)NCBICHM1_1
T2T-CHM13v2.016,046,991 - 6,080,171 (-)NCBIT2T-CHM13v2.0
Nol9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,123,731 - 152,145,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,123,778 - 152,145,951 (+)EnsemblGRCm39 Ensembl
GRCm384152,039,261 - 152,061,494 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,039,321 - 152,061,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv374151,413,436 - 151,435,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364150,883,134 - 150,905,294 (+)NCBIMGSCv36mm8
Celera4154,325,712 - 154,347,813 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.84NCBI
Nol9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,829,249 - 167,849,364 (+)NCBIGRCr8
mRatBN7.25162,546,522 - 162,566,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,546,541 - 162,566,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,249,554 - 165,268,134 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,070,898 - 167,089,516 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,033,098 - 167,051,718 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,213,076 - 169,233,173 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,213,115 - 169,230,141 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,771,350 - 172,791,436 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,268,990 - 169,287,527 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5160,779,220 - 160,799,317 (+)NCBICelera
Cytogenetic Map5q36NCBI
NOL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,672,006 - 221,705,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,314,092 - 220,348,079 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,283,518 - 5,317,431 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,541,712 - 6,571,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,541,712 - 6,571,463 (-)Ensemblpanpan1.1panPan2
NOL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,372,573 - 60,395,805 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,375,361 - 60,396,174 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,382,187 - 60,405,345 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,588,334 - 60,611,485 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,590,640 - 60,611,485 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,587,422 - 60,610,564 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,454,079 - 60,477,234 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,855,994 - 60,879,354 (-)NCBIUU_Cfam_GSD_1.0
Nol9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,817,585 - 30,838,394 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,305,973 - 1,323,609 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,302,818 - 1,323,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,375,196 - 67,396,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,375,212 - 67,396,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,331,070 - 62,349,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,188,185 - 125,215,984 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,188,275 - 125,215,685 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605429,233,326 - 29,265,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,960,601 - 4,972,598 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248184,960,663 - 4,974,906 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007709   ⟹   ENSCLAP00000007591
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554866,066,136 - 6,079,117 (+)Ensembl
RefSeq Acc Id: XM_013504255   ⟹   XP_013359709
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554866,066,093 - 6,079,756 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359709 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007591.1
Reference Protein Sequences
RefSeq Acc Id: XP_013359709   ⟸   XM_013504255
- Sequence:
RefSeq Acc Id: ENSCLAP00000007591   ⟸   ENSCLAT00000007709
Protein Domains
Polyribonucleotide 5'-hydroxyl-kinase Clp1 P-loop


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005331 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007709.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Clp1/Grc3 UniProtKB/TrEMBL
  CLP1_P UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Nol9 ENTREZGENE
PANTHER POLYNUCLEOTIDE 5'-HYDROXYL-KINASE NOL9 UniProtKB/TrEMBL
  PTHR12755 UniProtKB/TrEMBL
Pfam CLP1_P UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2V3H0_CHILA UniProtKB/TrEMBL