Imp3 (IMP U3 small nucleolar ribonucleoprotein 3)

Gene: Imp3 (IMP U3 small nucleolar ribonucleoprotein 3) Chinchilla lanigera

Analyze

Symbol:

Imp3

Name:

IMP U3 small nucleolar ribonucleoprotein 3

RGD ID:

8967107

Description:

INVOLVED IN ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); colorectal cancer (ortholog); FOUND IN Mpp10 complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

IMP3, U3 small nucleolar ribonucleoprotein; IMP3, U3 small nucleolar ribonucleoprotein, homolog; U3 small nucleolar ribonucleoprotein protein IMP3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955450	2,690,814 - 2,692,336 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

chromosome 15q24 deletion syndrome (ISO)

colorectal cancer (ISO)

epilepsy (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosomal small subunit biogenesis (ISO)

rRNA processing (ISO)

Cellular Component

Mpp10 complex (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

preribosome (ISO)

small-subunit processome (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Imp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955450	2,690,814 - 2,692,336 (+)	NCBI	ChiLan1.0	ChiLan1.0

IMP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	75,639,093 - 75,640,224 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	75,639,085 - 75,648,706 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	75,931,434 - 75,932,565 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	73,718,491 - 73,719,650 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	73,718,496 - 73,719,611	NCBI
Celera	15	52,856,412 - 52,857,650 (-)	NCBI		Celera
Cytogenetic Map	15	q24.2	NCBI
HuRef	15	52,687,710 - 52,688,948 (-)	NCBI		HuRef
CHM1_1	15	76,050,886 - 76,052,124 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	73,509,801 - 73,510,932 (-)	NCBI		T2T-CHM13v2.0

Imp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	56,844,784 - 56,845,682 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	56,844,759 - 56,845,682 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	56,937,500 - 56,938,398 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	56,937,475 - 56,938,398 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	56,785,307 - 56,786,205 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	56,735,637 - 56,736,535 (+)	NCBI		MGSCv36	mm8
Celera	9	54,162,594 - 54,163,492 (+)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	30.53	NCBI

Imp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	66,235,498 - 66,236,386 (+)	NCBI		GRCr8
mRatBN7.2	8	57,339,528 - 57,340,416 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	57,339,496 - 57,340,414 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	62,862,921 - 62,863,809 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	61,141,764 - 61,142,652 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	59,006,205 - 59,007,093 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	61,607,021 - 61,607,909 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,607,015 - 61,608,457 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	60,176,548 - 60,177,436 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	60,685,389 - 60,686,277 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	60,701,412 - 60,705,332 (+)	NCBI
Celera	8	56,807,836 - 56,808,724 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

IMP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	64,832,715 - 64,842,117 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	68,996,613 - 68,998,203 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	54,547,455 - 54,548,633 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	74,140,632 - 74,141,810 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	74,141,156 - 74,141,710 (-)	Ensembl	panpan1.1		panPan2

IMP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,431,236 - 38,432,107 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,424,520 - 38,432,143 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,361,474 - 38,362,342 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	38,636,569 - 38,637,437 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	38,635,297 - 38,637,365 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	38,588,052 - 38,588,920 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	38,633,621 - 38,634,489 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	38,870,376 - 38,871,244 (-)	NCBI		UU_Cfam_GSD_1.0

Imp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	116,557,586 - 116,558,903 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	34,406,305 - 34,406,859 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	34,405,968 - 34,407,044 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IMP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	58,023,368 - 58,024,496 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	58,023,368 - 58,024,496 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	62,712,260 - 62,713,388 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IMP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	7,793,302 - 7,794,976 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	7,793,899 - 7,794,453 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	133,899,769 - 133,900,996 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Imp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624894	537,362 - 537,916 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624894	536,850 - 538,000 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005393505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01042395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01087621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005393505 ⟹ XP_005393562

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	2,690,814 - 2,692,336 (+)	NCBI

Sequence:

show sequence

CTGTCCTGAGAGTTCCCAAAAAGCACAGCTCTAAAGTAAAGCTACCACTGGACTGCCGGATGCT
TTCTCGGTTGCTAGGAAACGCGCCCGGCAGCTCCGGGACCGCCCTGCTGGTGCCGCCTTTTCCT
CCTCCCTCTACTAACAGGAAGTAGAAAACAAAGGCGAGACTAGGGCGCGAGGGCGTGTTCCCGC
TTTAGCCAATGGGAAGAGTAGGGCGTAGCTAAGCGCCCTTCCTTTATTGCCCCAGAACCTGCAA
GCACGCTCACTCTCTGCTCCGAGGCGAACACGCAAGGCTCCGAGGCGGAAGACGCGAGACTCCC
TGGCGCTCCCTCAGCGGCTGCCATCATGGTGCGGAAGCTGAAATTCCACGAGCAGAAGCTGCTG
AAGCAGGTGGACTTCCTGAACTGGGAGGTCACGGACCACAACCTCCACGAACTGCGTGTCCTGC
GGCGTTACAGGCTGCAGCGGCGCGAGGACTACACGAAGTACAACCAGCTGAGCCGGAAGGTGCG
TGAGCTAGCGCGGCGACTGCGCGACCTGCCCGAGCGCGACCCGTTCCGCGTGCGCGCCTCCGCC
GCATTGCTGAACAAGCTTTACGCTCTGGGCTTGGTGCCCACGCGCGGCTCGCTGGAGCTCTGCG
ATTTCGTCACAGCCTCGTCCTTCTGCCGCCGCCGCCTGCCCACCGTGCTCGTCAAGCTGCGCAT
GGCGCAGCATCTCCAGGCTGCTGTGGCCTTTGTGGAACAGGGCCACGTGCGCGTGGGCCCGGAC
GTGGTGACGGACCCAGCCTTCCTTGTCACCCGCAGCATGGAGGACTTTGTCACCTGGGTCGACT
CATCCAAGATCAAGCAACACGTGCTGGAGTACAACGAGGAGCGCGACGACTTTGATCTGGATGC
CTAGAGGGTCTCGCTGTCGCTCCACCTCTCTTCAGGATGGCAAACGGGTCCGACGCTGGCGATC
TGAGAGTGCTCTAAACAGTGGCACTCAATTGGGGACTTTCAAGAATTTGGCTCATCGAGGGATT
TAGCTCACTGGCAAAGCTCCTGCCTGGCAAGCGCAAGGTCGTGAGTTCGATTTCTGGTACCGGA
AGAAAAACAAACGAACAAGCAAACAAAAAAGAATTTGGCTCATCAGCTGCAGATCACAGAACCG
AGGTGGGGAGGGCCGCTCCTGTTCTCCAGGAAATTTTCGTAGAACTGACTACTGGTAACTAAAT
GATAGTGCCTTTAGACCGTGGGAAGCGGTTTTGTGCTACCCTGGGGATTGTCAGCCTCAAGGAG
CAGAAGACGTTGCAGTGTAAAAGCAAGAACGTTACCCTCCCGGTTCCCGTTATCGCCTTGTAGC
AGGACTGATTTCTTCAATTTGTTTAACTCAAATACTTCTGATTGTGAGTAAGCTGTGATCGATG
GATCGTTTGGGCCCAAGTTTCCATGAAAGTGAGTGAGACTTTGGTGTTAAGGGTTCCCCCATTT
AAAGGAACGCTTTCCTGATACCAATAAATGGCTTATCTGCTTGTAAATGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005393562	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005393562 ⟸ XM_005393505
- Sequence:	show sequence MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTKYNQLSRKVRELARRLRD LPERDPFRVRASAALLNKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLVKLRMAQHLQAAV AFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKQHVLEYNEERDDFDLDA hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Imp3	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-29	Imp3	IMP U3 small nucleolar ribonucleoprotein 3		IMP3, U3 small nucleolar ribonucleoprotein	Symbol and/or name change	5135510	APPROVED
2015-08-25	Imp3	IMP3, U3 small nucleolar ribonucleoprotein		IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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