Ints12 (integrator complex subunit 12)

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Gene: Ints12 (integrator complex subunit 12) Chinchilla lanigera

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Symbol:

Ints12

Name:

integrator complex subunit 12

RGD ID:

8908894

Description:

INVOLVED IN snRNA processing (ortholog); FOUND IN integrator complex (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955496	3,564,548 - 3,580,178 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955496	3,564,548 - 3,580,178 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

snRNA processing (ISO)

Cellular Component

integrator complex (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ints12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955496	3,564,548 - 3,580,178 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955496	3,564,548 - 3,580,178 (+)	NCBI	ChiLan1.0	ChiLan1.0

INTS12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	105,682,627 - 105,708,689 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	105,682,627 - 105,895,986 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	106,603,784 - 106,629,846 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	106,823,233 - 106,849,278 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	103,902,937 - 103,929,034 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI
HuRef	4	102,338,313 - 102,364,411 (-)	NCBI		HuRef
CHM1_1	4	106,580,579 - 106,606,675 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	108,993,748 - 109,019,869 (-)	NCBI		T2T-CHM13v2.0

Ints12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	132,797,616 - 132,816,749 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	132,797,601 - 132,816,749 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	133,091,855 - 133,110,988 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	133,091,840 - 133,110,988 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	132,754,917 - 132,773,952 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	133,029,259 - 133,048,294 (+)	NCBI		MGSCv36	mm8
Celera	3	139,516,379 - 139,535,420 (+)	NCBI		Celera
Cytogenetic Map	3	G3	NCBI
cM Map	3	61.56	NCBI

Ints12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	224,265,787 - 224,283,523 (+)	NCBI		GRCr8
mRatBN7.2	2	221,591,761 - 221,609,497 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	221,591,682 - 221,609,497 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	229,254,306 - 229,265,596 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	227,153,984 - 227,165,274 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	222,011,652 - 222,022,942 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	238,253,114 - 238,270,722 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	238,257,031 - 238,269,370 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	256,790,289 - 256,807,897 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	230,615,309 - 230,627,005 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	230,602,048 - 230,613,742 (+)	NCBI
Celera	2	213,828,999 - 213,840,695 (+)	NCBI		Celera
Cytogenetic Map	2	q43	NCBI

INTS12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	103,768,572 - 103,794,693 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	104,063,757 - 104,089,893 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	98,150,951 - 98,177,094 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	108,760,946 - 108,786,766 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	108,756,161 - 108,786,766 (-)	Ensembl	panpan1.1		panPan2

INTS12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	26,501,635 - 26,540,258 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	26,511,750 - 26,531,312 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	15,485,868 - 15,524,073 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	26,732,900 - 26,771,351 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	26,739,528 - 26,771,229 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	26,730,331 - 26,768,124 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	26,475,817 - 26,514,012 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	13,348,702 - 13,387,135 (+)	NCBI		UU_Cfam_GSD_1.0

Ints12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	14,665,557 - 14,673,649 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936752	74,918 - 83,289 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936752	74,918 - 83,037 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INTS12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	116,031,897 - 116,060,220 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	116,031,864 - 116,066,804 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	124,530,659 - 124,532,054 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

INTS12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	53,724,587 - 53,750,766 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	53,724,693 - 53,742,331 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	32,343,461 - 32,369,683 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ints12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624830	3,100,156 - 3,116,259 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624830	3,100,550 - 3,116,033 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005406221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01062296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01052169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000004389 ⟹ ENSCLAP00000004306

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955496	3,564,548 - 3,580,178 (+)	Ensembl

RefSeq Acc Id:

XM_005406221 ⟹ XP_005406278

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955496	3,564,548 - 3,580,178 (+)	NCBI

Sequence:

show sequence

CCCGGGAGCTGCTGCCAGCCGAACCCTGGCTTCCAGAGGTGCCAAGAAAGAAAAATGGGCAGCT
GGTGTAGAAAACAACCGCGCCACCACTCATTCATAATCCGGCGGACCGGAAGTCGGTGATTACG
TCACTTCCTATGGTCGCCCTGCCAAGCCGGAACCTTTCTTTCCTGGCATCAGAAGCCGGCTGTG
AGGGGAGCGGTTAGGGGGCGGTCTCGGCGCGGAAGAGTGAGTGGAGACGGCCGTGCGTTTGCGG
ACGCGCTGGGATGCTCTGGTCCCGCTAGGGGCAAGGGGCGTGGAGCCCGTGAGATCCTGGCTTC
CTCGCTGCCTGAGGACTACCCTAGTATTTGGGGTGTGGGCGGTGCGCACCCCCGCTTGGCTGCC
CCCAGCTTTCAGCTAGGACTAAACCTCCTCCGAGGGCCCCGTGGACTGGACACGCGGGTGAGGC
CACGGCGTGGGGCCTCGGGCTGGGAACCCCGCCCCGACCTTTCTTCCTCAGGGCACAGCCAGCC
CCCGGCCCCCGCACCCGTCATCTCTGCCATCCTGTGCGAGGCCTTCCCTGTGTCTCGCTTTGAT
CGGAGGTTGACAGTGCTTCCCTGAGTCCCCTCCCGTCGCTTCCGGCTTCTCTGCTGCTCAGATC
GTGTTGGAATCGGTGCCCGAATCACCTGCCCTGCGTTCCCCGGCGTGGCCCTAAGGTATTTACA
ATGGCTGCAACTGTGAACTTGGAACTCGATCCCATTTTTTTGAAGGCACTGGGTTTCTTACATT
CAAAGAGTAAAGATTCTGCTGAAAAGCTAAAAGCATTGCTTGATGAATCTTTGGCTCGGGGGAG
TGATTCAAGTTACCGTCCAACTCAAAAGGATGTGGAACCACCCAAAATTTCAAGCACAAAATCT
ATTTCTATTAAGCAAGAGCCCAAAACATCATCCACTCTTCTTCCTGGCAATAACAATGGCAAAG
TCCTTTCAACTGAAAAGGCCAAGAAAGAGGCTGAGAAGAGGCCTGCTGATAAAATGAAGTCAGA
CATTGCTGAAGGAGTTGATGTTCCAAAGAAACCTAGATTGGAGAAACCAGAGACACGATCCTCT
CCCATCACTGTCCAAACCAGCAAGGATTTAGCTATTGCTGACCTTTCCAGCTTCGAGGAAACAA
GCGCCGATGACTTTGCCATGGAGATGGGATTGGCCTGTGTTGTTTGTAGACAGATGACGGTGGC
ATCGGGTAATCAGTTAGTGGAATGTCAGGAGTGCCATAATCTCTACCACCAGGACTGCCACAAG
CCTCAGGTGACGGACAAGGAAGTGAATGACCCTCGGCTGGTGTGGTATTGCGCCCGGTGCACCC
GGCAGATGAAGAGAATGGCTCAGAAAACTCAGAAGCCCCAGCAGAAGCCAGCCCCCGCTGTGGT
CTCCGCAGCCCCAGCCATCAAGGATCCCTTGGTTAAGAAACCGGAAACAAAGCTCAAACAAGAG
ACCACCTTCCTAGCGTTCAAGAGGACAGAAGTCAAGACATCTGCTGTTATTTCAGGAAGTTCAT
CTAGCACCAGTGTTTCCTCTTCCGCAACCAGTGGCCTAACTGGATGGGCAGCTTTTGCCGCCAA
AACGTCCTCCGCTGGGCCATCAACAGCAAAATTGAGTTCAACAGCACAAAACAGTGGGGGGAAG
CCAGCCGCCTCTGCAGCTAGCCAGAAACCTGTGGGTTTGACGGGCCTGGCAACATCAACCAAAG
GTGGACTGGGATCCAAGATAGGTCCTGGCAGCAGCACTTCACCCACCGTGCCACTGAAACCGCC
GCCTCCTCTGACCCTGGGCAAAACCGGCCTTAGCCGCTCAGTTAGTTGTGACAATGTCAGCAAA
ATAGGTCTTCCAAGTCCCACTAGTTTAGTGCCAGGAAGCAGTGGCCAGCTGAGTGGAAATGGAA
ACAGCAGCTCATCAGGGCCTAGTGGAAATTCCACCAGCAAAACCACCTCCGAAGCCAGCAGCAG
TCCCTCAGCATCCCTTAAAGGTCCAACATCTCAGGAGTCACAGCTCAATGCCATGAAGCGCTTA
CAGATGGTCAAGAAGAAAGCTGCCCAAAAGAAACTCAAGAAGTGAGGTGGCCAGATAAGGTTGT
GTGTCCTGTTACCGCAGAGAGGACCAGGCTACTGTGGGACATGGACTGCTGGGTTCCATAATTT
AATAAAAATCTTGATACTCCGTCTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005406278	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004306
	ENSCLAP00000004306.1

RefSeq Acc Id:

XP_005406278 ⟸ XM_005406221

- UniProtKB:

A0A8C2YK01 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAATVNLELDPIFLKALGFLHSKSKDSAEKLKALLDESLARGSDSSYRPTQKDVEPPKISSTKS
ISIKQEPKTSSTLLPGNNNGKVLSTEKAKKEAEKRPADKMKSDIAEGVDVPKKPRLEKPETRSS
PITVQTSKDLAIADLSSFEETSADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK
PQVTDKEVNDPRLVWYCARCTRQMKRMAQKTQKPQQKPAPAVVSAAPAIKDPLVKKPETKLKQE
TTFLAFKRTEVKTSAVISGSSSSTSVSSSATSGLTGWAAFAAKTSSAGPSTAKLSSTAQNSGGK
PAASAASQKPVGLTGLATSTKGGLGSKIGPGSSTSPTVPLKPPPPLTLGKTGLSRSVSCDNVSK
IGLPSPTSLVPGSSGQLSGNGNSSSSGPSGNSTSKTTSEASSSPSASLKGPTSQESQLNAMKRL
QMVKKKAAQKKLKK

hide sequence

Ensembl Acc Id:

ENSCLAP00000004306 ⟸ ENSCLAT00000004389

Protein Domains

PHD-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003066	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004389	ENTREZGENE
	ENSCLAT00000004389.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	Int12_PHD	UniProtKB/TrEMBL
	Integrator_subunit_12	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	Ints12	ENTREZGENE
PANTHER	INTEGRATOR COMPLEX SUBUNIT 12	UniProtKB/TrEMBL
	NUCLEAR FACTOR-RELATED	UniProtKB/TrEMBL
Pfam	PHD	UniProtKB/TrEMBL
PROSITE	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
SMART	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57903	UniProtKB/TrEMBL
UniProt	A0A8C2YK01	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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