Rps15 (ribosomal protein S15) - Rat Genome Database

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Gene: Rps15 (ribosomal protein S15) Chinchilla lanigera
Analyze
Symbol: Rps15
Name: ribosomal protein S15
RGD ID: 8972884
Description: ENCODES a protein that exhibits MDM2/MDM4 family protein binding (ortholog); structural constituent of ribosome (ortholog); ubiquitin ligase inhibitor activity (ortholog); INVOLVED IN liver regeneration (ortholog); positive regulation of signal transduction by p53 class mediator (ortholog); ribosomal small subunit assembly (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Disease Progression (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S15
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,492,968 - 6,495,435 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,492,968 - 6,495,435 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,492,968 - 6,495,435 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,492,968 - 6,495,435 (-)NCBIChiLan1.0ChiLan1.0
RPS15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,438,396 - 1,440,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,438,358 - 1,440,495 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,438,395 - 1,440,494 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,389,363 - 1,391,492 (+)NCBINCBI36Build 36hg18NCBI36
Build 34191,389,378 - 1,391,492NCBI
Celera191,372,361 - 1,374,490 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,212,788 - 1,214,917 (+)NCBIHuRef
CHM1_1191,438,358 - 1,440,487 (+)NCBICHM1_1
T2T-CHM13v2.0191,408,393 - 1,410,492 (+)NCBIT2T-CHM13v2.0
Rps15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,128,265 - 80,129,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,128,287 - 80,129,948 (+)EnsemblGRCm39 Ensembl
GRCm381080,292,431 - 80,294,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,292,453 - 80,294,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,755,176 - 79,756,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,695,586 - 79,697,241 (+)NCBIMGSCv36mm8
Celera1081,307,304 - 81,308,987 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Rps15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,066,572 - 10,068,167 (-)NCBIGRCr8
mRatBN7.279,416,003 - 9,417,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,416,004 - 9,417,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,292,692 - 12,294,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,168,034 - 14,169,474 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,035,497 - 12,036,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,282,134 - 12,283,573 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,282,109 - 12,283,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,451,929 - 12,453,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,927,341 - 10,928,780 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,927,341 - 10,928,780 (-)NCBI
Celera77,592,789 - 7,594,228 (-)NCBICelera
Cytogenetic Map7q11NCBI
LOC100979953
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,647,875 - 5,652,448 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,884,658 - 4,889,535 (-)NCBINHGRI_mPanPan1
RPS15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,406,544 - 57,407,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,406,545 - 57,413,421 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,198,050 - 57,199,151 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,137,324 - 58,138,425 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12057,193,315 - 57,194,416 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,672,974 - 57,674,075 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,874,995 - 57,876,096 (-)NCBIUU_Cfam_GSD_1.0
Rps15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,071,378 - 217,072,674 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588761,924 - 764,742 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588762,153 - 763,405 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,043,329 - 77,046,747 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,043,329 - 77,044,749 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,935,614 - 77,937,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,211,716 - 1,213,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,211,713 - 1,214,044 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660817,639,665 - 7,641,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,252,123 - 7,254,441 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,252,123 - 7,254,537 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010631   ⟹   ENSCLAP00000010500
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554956,492,968 - 6,495,435 (-)Ensembl
RefSeq Acc Id: XM_005405969   ⟹   XP_005406026
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,492,968 - 6,495,435 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406026 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010500
  ENSCLAP00000010500.1
Reference Protein Sequences
RefSeq Acc Id: XP_005406026   ⟸   XM_005405969
- UniProtKB: A0A8C2YMY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010500   ⟸   ENSCLAT00000010631


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007248 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010631 ENTREZGENE
  ENSCLAT00000010631.1 UniProtKB/TrEMBL
InterPro Ribosomal_S15/S19_CS UniProtKB/TrEMBL
  Ribosomal_S19 UniProtKB/TrEMBL
  Ribosomal_S19_S15_SF UniProtKB/TrEMBL
  Ribosomal_S19A/S15e UniProtKB/TrEMBL
NCBI Gene Rps15 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S15 UniProtKB/TrEMBL
  PTHR11880 UniProtKB/TrEMBL
Pfam Ribosomal_S19 UniProtKB/TrEMBL
PIRSF Ribosomal_S19 UniProtKB/TrEMBL
PRINTS RIBOSOMALS19 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S19 UniProtKB/TrEMBL
Superfamily-SCOP SSF54570 UniProtKB/TrEMBL
UniProt A0A8C2YMY8 ENTREZGENE, UniProtKB/TrEMBL